PDB Chemical Component P5M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P5M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O22 |
C16 |
1.362 |
1.360 |
| O24 |
C17 |
1.363 |
1.360 |
| C16 |
C17 |
1.478 |
1.392 |
| C16 |
C15 |
1.388 |
1.383 |
| C17 |
C18 |
1.480 |
1.392 |
| C15 |
C14 |
1.391 |
1.395 |
| C18 |
O21 |
1.371 |
1.360 |
| C18 |
C19 |
1.394 |
1.383 |
| O21 |
C23 |
1.427 |
1.429 |
| C14 |
C19 |
1.397 |
1.397 |
| C14 |
C11 |
1.493 |
1.479 |
| O12 |
C11 |
1.372 |
1.209 |
| O12 |
C4 |
1.365 |
1.218 |
| C5 |
C4 |
1.386 |
1.403 |
| C5 |
C6 |
1.393 |
1.378 |
| C11 |
C10 |
1.497 |
1.407 |
| O29 |
C6 |
1.362 |
1.358 |
| C4 |
C3 |
1.482 |
1.417 |
| C6 |
C1 |
1.395 |
1.396 |
| C10 |
O27 |
1.362 |
1.360 |
| C10 |
C9 |
1.392 |
1.378 |
| C3 |
C9 |
1.387 |
1.412 |
| C3 |
C2 |
1.487 |
1.406 |
| C1 |
C2 |
1.390 |
1.367 |
| C2 |
O30 |
1.362 |
1.358 |
| O30 |
H1 |
0.950 |
0.968 |
| C9 |
H2 |
1.080 |
1.079 |
| O27 |
H3 |
0.950 |
0.967 |
| C1 |
H4 |
1.080 |
1.079 |
| O29 |
H5 |
0.950 |
0.966 |
| C5 |
H6 |
1.080 |
1.081 |
| C15 |
H7 |
1.080 |
1.080 |
| O22 |
H8 |
0.950 |
0.967 |
| C19 |
H9 |
1.080 |
1.079 |
| C23 |
H10 |
1.100 |
1.089 |
| C23 |
H11 |
1.101 |
1.090 |
| C23 |
H12 |
1.100 |
1.089 |
| O24 |
H13 |
0.950 |
0.967 |
Bond Angles for P5M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
C16 |
C17 |
120.4 |
120.0 |
| C16 |
C17 |
C18 |
117.3 |
120.1 |
| C16 |
C15 |
H7 |
119.1 |
120.0 |
| C15 |
C14 |
C19 |
120.7 |
119.9 |
| C18 |
O21 |
C23 |
119.7 |
117.0 |
| C18 |
C19 |
H9 |
119.1 |
120.1 |
| O21 |
C23 |
H10 |
109.5 |
109.5 |
| O21 |
C23 |
H11 |
109.5 |
109.4 |
| O21 |
C23 |
H12 |
109.5 |
109.4 |
| C14 |
C19 |
H9 |
119.2 |
120.0 |
| C4 |
C5 |
H6 |
119.5 |
120.1 |
| C6 |
C1 |
H4 |
119.3 |
119.7 |
| C10 |
O27 |
H3 |
109.5 |
114.0 |
| C10 |
C9 |
H2 |
120.3 |
122.3 |
| C3 |
C9 |
H2 |
120.3 |
122.3 |
| C2 |
O30 |
H1 |
109.5 |
114.0 |
| H10 |
C23 |
H11 |
109.4 |
109.5 |
| H10 |
C23 |
H12 |
109.5 |
109.5 |
| H11 |
C23 |
H12 |
109.5 |
109.5 |
Torsion Angles for P5M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
C16 |
C17 |
C18 |
179.9 |
180.3 |
| O22 |
C16 |
C15 |
H7 |
0.3 |
0.1 |
| C17 |
C16 |
C15 |
H7 |
180.1 |
180.0 |
| C16 |
C15 |
C14 |
C19 |
359.5 |
360.0 |
| C17 |
C18 |
C19 |
H9 |
179.7 |
180.6 |
| C15 |
C14 |
C19 |
H9 |
180.6 |
179.7 |
| C16 |
C17 |
C18 |
O21 |
179.9 |
179.9 |
| O21 |
C18 |
C19 |
H9 |
359.8 |
0.1 |
| C18 |
O21 |
C23 |
H10 |
180.0 |
300.0 |
| C18 |
O21 |
C23 |
H11 |
300.0 |
60.0 |
| C18 |
O21 |
C23 |
H12 |
60.0 |
180.0 |
| C16 |
C17 |
C18 |
C19 |
0.0 |
359.4 |
| C14 |
C19 |
C18 |
H9 |
180.0 |
179.9 |
| H10 |
C23 |
O21 |
H11 |
240.0 |
240.0 |
| H10 |
C23 |
O21 |
H12 |
120.0 |
120.0 |
| H11 |
C23 |
O21 |
H12 |
240.0 |
240.0 |
| C18 |
C19 |
C14 |
H9 |
180.0 |
180.1 |
| O12 |
C4 |
C5 |
H6 |
0.1 |
0.4 |
| C5 |
C6 |
C1 |
H4 |
180.0 |
180.0 |
| C11 |
C10 |
O27 |
H3 |
180.0 |
270.0 |
| C11 |
C10 |
C9 |
H2 |
180.1 |
180.0 |
| O29 |
C6 |
C1 |
H4 |
0.0 |
0.0 |
| C4 |
C3 |
C9 |
H2 |
180.0 |
180.0 |
| O27 |
C10 |
C9 |
H2 |
360.0 |
0.0 |
| C3 |
C9 |
C10 |
H2 |
180.0 |
180.0 |
| C10 |
C9 |
C3 |
H2 |
180.0 |
180.0 |
| C3 |
C2 |
O30 |
H1 |
180.0 |
90.0 |
| C1 |
C2 |
O30 |
H1 |
0.1 |
269.7 |
| H7 |
C15 |
C14 |
C19 |
179.5 |
180.0 |
| H8 |
O22 |
C16 |
C17 |
180.0 |
90.0 |
| O21 |
C23 |
H10 |
H11 |
120.0 |
120.0 |
| O21 |
C23 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
C23 |
H10 |
H12 |
120.0 |
120.0 |
| O21 |
C23 |
H11 |
H10 |
240.0 |
240.0 |
| O21 |
C23 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C23 |
H11 |
H12 |
240.0 |
239.9 |
| O21 |
C23 |
H12 |
H10 |
120.1 |
120.0 |
| O21 |
C23 |
H12 |
H11 |
240.0 |
240.1 |
| H10 |
C23 |
H12 |
H11 |
120.0 |
120.0 |