PDB Chemical Component P5C

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for P5C

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N1 1.357 1.325
C2 N5 1.349 1.328
C2 N7 1.356 1.379
C3 C4 1.398 1.400
C3 N5 1.348 1.320
N1 C6 1.364 1.329
C4 C6 1.386 1.412
C4 C8 1.508 1.471
C6 N11 1.367 1.380
C8 O10 1.227 1.217
C8 N9 1.328 1.347
C12 C13 1.401 1.389
C12 C17 1.394 1.389
C12 N11 1.367 1.398
C13 C16 1.398 1.381
C14 C15 1.393 1.383
C14 C16 1.398 1.383
C15 C17 1.396 1.382
C15 C18 1.510 1.506
N7 C19 1.458 1.466
C19 C24 1.545 1.530
C19 C20 1.537 1.530
C24 N25 1.458 1.469
C24 C23 1.529 1.530
C23 C22 1.537 1.530
C22 C21 1.529 1.530
C21 C20 1.533 1.530
C3 H3 1.081 1.080
C13 H13 1.080 1.080
C14 H14 1.080 1.079
C16 H16 1.080 1.080
C17 H17 1.080 1.080
C18 H18 1.100 1.090
C18 H18A 1.100 1.090
C18 H18B 1.101 1.090
N9 HN9 1.000 0.970
N9 HN9A 1.000 0.970
N11 HN11 1.000 0.970
N7 HN7 1.000 0.969
C19 H19 1.100 1.090
C24 H24 1.099 1.090
N25 HN25 1.000 1.009
N25 HN2A 1.000 1.009
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C22 H22 1.100 1.090
C22 H22A 1.099 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C20 H20 1.101 1.090
C20 H20A 1.099 1.090

Bond Angles for P5C

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C2 N5 119.3 122.0
N1 C2 N7 120.9 118.9
C2 N1 C6 122.9 120.8
N5 C2 N7 119.8 119.1
C2 N5 C3 120.0 121.2
C2 N7 C19 122.6 119.9
C2 N7 HN7 105.3 120.1
C4 C3 N5 121.4 119.1
C3 C4 C6 118.4 118.2
C3 C4 C8 119.9 120.9
C4 C3 H3 119.3 120.5
N5 C3 H3 119.3 120.5
N1 C6 C4 117.9 118.8
N1 C6 N11 122.2 120.6
C6 C4 C8 121.8 120.9
C4 C6 N11 119.9 120.6
C4 C8 O10 121.3 120.0
C4 C8 N9 118.0 120.0
C6 N11 C12 127.6 120.0
C6 N11 HN11 116.2 119.9
O10 C8 N9 120.7 120.0
C8 N9 HN9 110.1 120.1
C8 N9 HN9A 125.0 120.0
C13 C12 C17 118.5 119.9
C13 C12 N11 123.3 120.1
C12 C13 C16 121.5 119.9
C12 C13 H13 119.2 120.0
C17 C12 N11 118.2 120.0
C12 C17 C15 120.6 119.9
C12 C17 H17 119.7 120.1
C12 N11 HN11 116.2 120.0
C13 C16 C14 119.2 120.1
C16 C13 H13 119.3 120.1
C13 C16 H16 120.4 119.9
C15 C14 C16 119.7 120.2
C14 C15 C17 120.5 120.0
C14 C15 C18 119.8 120.0
C15 C14 H14 120.1 119.9
C16 C14 H14 120.2 119.9
C14 C16 H16 120.4 120.0
C17 C15 C18 119.7 120.0
C15 C17 H17 119.7 120.0
C15 C18 H18 109.5 109.5
C15 C18 H18A 109.5 109.5
C15 C18 H18B 109.4 109.5
N7 C19 C24 112.3 109.5
N7 C19 C20 109.8 109.5
C19 N7 HN7 105.3 120.0
N7 C19 H19 108.1 109.5
C24 C19 C20 111.8 109.5
C19 C24 N25 111.1 109.5
C19 C24 C23 110.9 109.5
C24 C19 H19 105.9 109.5
C19 C24 H24 107.1 109.4
C19 C20 C21 111.7 109.5
C20 C19 H19 108.7 109.5
C19 C20 H20 108.7 109.5
C19 C20 H20A 108.2 109.5
N25 C24 C23 108.6 109.5
N25 C24 H24 109.4 109.5
C24 N25 HN25 109.5 111.0
C24 N25 HN2A 109.4 111.0
C24 C23 C22 112.2 109.5
C23 C24 H24 109.7 109.5
C24 C23 H23 108.6 109.4
C24 C23 H23A 108.0 109.4
C23 C22 C21 113.3 109.5
C22 C23 H23 108.6 109.5
C22 C23 H23A 108.0 109.5
C23 C22 H22 108.2 109.5
C23 C22 H22A 107.3 109.5
C22 C21 C20 112.6 109.5
C21 C22 H22 108.2 109.5
C21 C22 H22A 107.3 109.5
C22 C21 H21 108.5 109.5
C22 C21 H21A 107.7 109.4
C20 C21 H21 108.4 109.5
C20 C21 H21A 107.8 109.5
C21 C20 H20 108.7 109.4
C21 C20 H20A 108.2 109.4
H18 C18 H18A 109.5 109.5
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.4
HN9 N9 HN9A 125.0 120.0
HN25 N25 HN2A 109.5 111.0
H23 C23 H23A 111.6 109.5
H22 C22 H22A 112.5 109.4
H21 C21 H21A 111.9 109.5
H20 C20 H20A 111.2 109.5

Torsion Angles for P5C

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N5 C2 N1 N7 180.1 180.2
N1 C2 N5 C3 359.7 0.0
N1 C2 N7 C19 8.0 180.0
N1 C2 N7 HN7 127.9 359.9
C2 N1 C6 C4 359.8 0.0
C2 N1 C6 N11 179.7 180.0
N1 C2 N5 N7 179.9 179.8
N5 C2 N1 C6 0.4 360.0
N5 C2 N7 C19 187.9 359.8
N5 C2 N7 HN7 307.9 179.7
C4 C3 N5 C2 360.0 360.0
C2 N5 C3 H3 180.0 180.0
N1 C2 N7 N5 180.1 180.2
N7 C2 N1 C6 180.3 179.8
N7 C2 N5 C3 179.8 180.3
C2 N7 C19 C24 85.2 155.0
C2 N7 C19 C20 210.3 275.0
C19 N7 C2 HN7 240.0 180.1
C2 N7 C19 H19 328.8 35.0
C2 N5 C3 C4 360.0 360.0
N5 C3 C4 H3 180.0 180.1
N1 C6 C4 C3 359.9 359.9
C6 C4 C3 C8 180.0 180.1
C3 C4 C6 N11 180.0 180.0
C3 C4 C8 O10 179.2 174.4
C3 C4 C8 N9 359.4 354.4
C3 N5 C2 N7 179.8 180.3
N5 C3 C4 C6 0.2 0.1
N5 C3 C4 C8 180.1 180.0
C4 C3 N5 H3 180.0 179.9
C6 N1 C2 N5 0.4 360.0
C6 N1 C2 N7 180.3 179.8
C3 C4 C6 N1 359.9 359.9
N1 C6 C4 C8 180.0 180.0
C4 C6 N1 N11 180.1 180.1
N1 C6 N11 C12 357.7 7.3
N1 C6 N11 HN11 177.7 187.3
C6 C4 C3 N5 0.2 0.1
C3 C4 C6 C8 180.0 179.9
C6 C4 C3 H3 180.2 180.0
N1 C6 C4 N11 179.9 179.9
C6 C4 C8 O10 359.1 354.3
C6 C4 C8 N9 179.3 174.3
C4 C6 N11 C12 177.6 187.2
C4 C6 N11 HN11 357.6 7.2
C8 C4 C3 N5 180.1 180.0
C3 C4 C8 C6 180.0 180.1
C8 C4 C3 H3 0.1 359.9
C8 C4 C6 N11 0.0 0.1
O10 C8 C4 N9 179.8 180.0
C4 C8 N9 HN9 359.9 0.0
C4 C8 N9 HN9A 179.9 180.0
N1 C6 N11 C4 180.1 180.1
N11 C6 C4 C8 0.0 0.1
C13 C12 N11 C6 15.2 33.5
C17 C12 N11 C6 195.3 213.3
C12 N11 C6 HN11 180.0 180.0
C4 C8 O10 N9 180.2 180.0
O10 C8 N9 HN9 180.1 180.0
O10 C8 N9 HN9A 0.1 360.0
C4 C8 N9 O10 179.8 180.0
HN9 N9 C8 HN9A 180.0 180.0
C6 N11 C12 C13 15.2 33.5
C17 C12 C13 N11 179.9 180.3
C13 C12 C17 C15 0.1 360.0
C13 C12 C17 H17 180.1 180.0
C13 C12 N11 HN11 195.2 213.5
C12 C13 C16 C14 359.5 0.1
C16 C13 C12 H13 180.0 180.0
C12 C13 C16 H16 179.5 180.0
C6 N11 C12 C17 195.3 213.3
C13 C12 C17 N11 180.1 179.7
C17 C12 C13 C16 0.3 360.0
C17 C12 C13 H13 180.3 180.0
C17 C12 N11 HN11 15.3 33.3
C14 C15 C17 C12 359.6 360.0
C12 C17 C15 C18 179.1 180.1
C15 C17 C12 H17 180.0 180.0
C6 N11 C12 HN11 180.0 180.0
C13 C12 N11 C17 179.9 180.3
N11 C12 C13 C16 180.4 179.7
N11 C12 C13 H13 0.4 359.7
N11 C12 C17 C15 180.0 180.3
N11 C12 C17 H17 0.1 0.3
C16 C13 C12 C17 0.3 360.0
C16 C13 C12 N11 180.4 179.7
C12 C13 C16 H13 180.0 180.0
C15 C14 C16 C13 0.2 359.9
C13 C16 C14 H14 180.1 180.0
C14 C16 C13 H16 180.0 180.1
C12 C17 C15 C14 359.6 360.0
C13 C16 C14 C15 0.2 359.9
C16 C14 C15 H14 180.0 180.1
C15 C14 C16 H16 180.2 180.0
C17 C15 C14 C18 179.5 180.1
C14 C15 C17 H17 179.6 180.0
C14 C15 C18 H18 69.3 90.0
C14 C15 C18 H18A 189.3 210.0
C14 C15 C18 H18B 309.3 330.0
C14 C16 C13 H13 179.5 180.1
C13 C16 C14 H16 180.0 179.9
C16 C14 C15 C17 0.3 0.1
C16 C14 C15 C18 180.8 180.0
C15 C14 C16 H14 180.0 179.9
C15 C17 C12 N11 180.0 180.3
C12 C17 C15 H17 180.0 180.0
C17 C15 C14 C16 0.3 0.1
C14 C15 C17 C18 180.5 179.9
C17 C15 C14 H14 180.3 180.0
C17 C15 C18 H18 249.8 270.0
C17 C15 C18 H18A 9.8 29.9
C17 C15 C18 H18B 129.8 149.9
C18 C15 C14 C16 180.8 180.0
C14 C15 C18 C17 179.5 180.1
C18 C15 C14 H14 0.8 359.9
C18 C15 C17 H17 359.1 0.0
H18 C18 C15 H18A 240.0 240.0
H18 C18 C15 H18B 120.0 120.0
H18A C18 C15 H18B 240.0 240.0
C2 N7 C19 HN7 120.0 179.9
C24 C19 N7 C20 234.9 240.0
N7 C19 C24 N25 58.8 300.0
N7 C19 C24 C23 179.7 60.0
C24 C19 N7 H19 116.5 120.0
N7 C19 C24 H24 299.4 180.0
N7 C19 C20 C21 180.0 300.0
C20 C19 N7 H19 241.6 240.0
N7 C19 C20 H20 300.0 60.0
N7 C19 C20 H20A 60.9 180.0
N7 C19 C24 C20 123.9 120.0
C24 C19 N7 HN7 325.3 335.0
N7 C19 C24 H19 242.2 240.0
C24 C19 C20 C21 305.4 60.0
C20 C19 C24 H19 118.2 120.0
C24 C19 C20 H20 65.4 180.0
C24 C19 C20 H20A 186.3 300.0
N25 C24 C19 C23 239.1 240.0
N25 C24 C19 H24 119.5 120.0
C19 C24 N25 HN25 230.4 180.0
C19 C24 N25 HN2A 350.4 304.0
C19 C24 C23 C22 306.3 60.0
C23 C24 C19 H24 240.3 240.0
C19 C24 C23 H23 66.3 180.0
C19 C24 C23 H23A 187.4 300.0
N7 C19 C20 C24 234.6 240.0
C20 C19 N7 HN7 90.3 95.0
N7 C19 C20 H19 118.1 120.0
C20 C19 C24 N25 294.9 180.0
C20 C19 C24 C23 55.8 300.0
C24 C19 C20 H19 243.5 240.0
C20 C19 C24 H24 175.4 60.0
C22 C21 C20 C19 51.5 300.0
C19 C20 C21 H21 291.5 180.0
C19 C20 C21 H21A 170.2 60.0
C21 C20 C19 H20 240.0 240.0
C21 C20 C19 H20A 119.1 120.0
H20 C20 C19 H20A 239.1 239.9
N25 C24 C19 C20 294.9 180.0
C19 C24 N25 C23 122.2 120.0
N25 C24 C19 H19 176.7 59.9
C19 C24 N25 H24 241.9 240.0
N25 C24 C23 C22 68.7 180.0
C23 C24 N25 H24 119.7 120.0
N25 C24 C23 H23 188.7 300.0
N25 C24 C23 H23A 309.8 60.0
HN25 N25 C24 HN2A 240.0 236.0
C23 C24 C19 C20 55.8 300.0
C19 C24 C23 N25 237.6 240.0
C23 C24 C19 H19 297.5 180.0
C19 C24 C23 H24 118.1 120.0
N25 C24 C23 H24 240.4 240.0
C23 C24 N25 HN25 108.2 60.0
C23 C24 N25 HN2A 228.1 184.0
C24 C23 C22 C21 51.5 300.0
C22 C23 C24 H23 240.0 240.0
C22 C23 C24 H23A 118.9 120.0
C24 C23 C22 H22 171.5 60.0
C24 C23 C22 H22A 293.2 180.0
H23 C23 C24 H23A 238.9 240.0
C22 C23 C24 H24 188.2 300.0
C24 C23 C22 H23 120.0 119.9
C24 C23 C22 H23A 241.2 240.0
C23 C22 C21 C20 309.8 60.0
C21 C22 C23 H22 240.0 240.0
C21 C22 C23 H22A 118.3 120.0
C23 C22 C21 H21 69.8 180.0
C23 C22 C21 H21A 191.1 300.0
H23 C23 C22 H23A 121.2 120.1
H22 C22 C23 H22A 238.3 240.1
C19 C20 C21 C22 51.5 300.0
C21 C22 C23 H23 291.5 180.1
C21 C22 C23 H23A 170.4 60.0
C23 C22 C21 H22 120.0 120.0
C23 C22 C21 H22A 241.7 240.0
C20 C21 C22 H21 240.0 240.0
C20 C21 C22 H21A 118.7 120.0
C22 C21 C20 H20 291.5 180.0
C22 C21 C20 H20A 170.6 60.0
H22 C22 C21 H22A 121.6 119.9
H21 C21 C22 H21A 238.7 240.0
C21 C20 C19 H19 61.9 180.0
C19 C20 C21 H20 120.0 120.0
C19 C20 C21 H20A 240.9 240.0
C20 C21 C22 H22 189.8 300.0
C20 C21 C22 H22A 68.1 180.0
C22 C21 C20 H21 120.0 120.0
C22 C21 C20 H21A 241.3 240.0
H21 C21 C20 H21A 121.3 120.0
H20 C20 C21 H20A 121.0 120.0
C4 C3 H3 N5 180.0 180.1
H3 C3 C4 C6 180.2 180.0
H3 C3 C4 C8 0.1 359.9
H13 C13 C12 C17 180.3 180.0
H13 C13 C12 N11 0.4 359.7
C12 C13 H13 C16 180.0 180.0
H13 C13 C16 C14 179.5 180.1
H13 C13 C16 H16 359.5 360.0
C15 C14 H14 C16 180.0 180.1
H14 C14 C15 C17 180.3 180.0
H14 C14 C15 C18 0.8 359.9
H14 C14 C16 H16 0.2 0.1
C13 C16 H16 C14 180.0 180.1
H16 C16 C13 H13 359.5 360.0
H16 C16 C14 H14 0.2 0.1
H17 C17 C12 N11 0.1 0.3
C12 C17 H17 C15 180.0 180.0
H17 C17 C15 C18 359.1 0.0
C15 C18 H18 H18A 120.0 120.0
C15 C18 H18 H18B 240.0 240.0
H18A C18 H18 H18B 120.0 120.0
C15 C18 H18A H18 240.0 240.0
C15 C18 H18A H18B 120.0 120.0
H18 C18 H18A H18B 240.0 240.0
C15 C18 H18B H18 120.0 120.0
C15 C18 H18B H18A 240.0 240.0
H18 C18 H18B H18A 120.0 120.0
C8 N9 HN9 HN9A 180.0 180.0
C8 N9 HN9A HN9 180.0 180.0
C6 N11 HN11 C12 180.0 180.0
C2 N7 HN7 C19 229.1 180.1
HN7 N7 C19 C24 325.3 335.0
HN7 N7 C19 C20 90.3 95.0
HN7 N7 C19 H19 208.8 215.0
N7 C19 H19 C24 120.6 120.0
N7 C19 H19 C20 240.9 240.0
H19 C19 N7 HN7 208.8 215.0
C24 C19 H19 C20 120.3 120.0
H19 C19 C24 N25 176.7 59.9
H19 C19 C24 C23 297.5 180.0
H19 C19 C24 H24 57.2 300.0
H19 C19 C20 C21 61.9 180.0
H19 C19 C20 H20 181.9 300.0
H19 C19 C20 H20A 302.8 60.1
H24 C24 C19 C20 175.4 60.0
C19 C24 H24 N25 120.6 120.0
C19 C24 H24 C23 239.6 240.0
H24 C24 C19 H19 57.2 300.0
N25 C24 H24 C23 119.0 120.0
H24 C24 N25 HN25 348.4 300.0
H24 C24 N25 HN2A 108.4 63.9
H24 C24 C23 C22 188.2 300.0
H24 C24 C23 H23 308.2 60.0
H24 C24 C23 H23A 69.4 180.0
HN25 N25 C24 C23 108.2 60.0
HN25 N25 C24 H24 348.4 300.0
C24 N25 HN25 HN2A 120.0 124.0
HN2A N25 C24 C23 228.1 184.0
HN2A N25 C24 H24 108.4 63.9
C24 N25 HN2A HN25 240.0 236.0
C24 C23 H23 C22 237.8 240.0
H23 C23 C24 H24 308.2 60.0
C24 C23 H23 H23A 118.9 120.0
H23 C23 C22 C21 291.5 180.1
C22 C23 H23 H23A 241.1 239.9
H23 C23 C22 H22 51.5 300.1
H23 C23 C22 H22A 173.2 60.0
C24 C23 H23A C22 121.5 120.0
H23A C23 C24 H24 69.4 180.0
C24 C23 H23A H23 240.8 240.0
H23A C23 C22 C21 170.4 60.0
C22 C23 H23A H23 119.3 120.1
H23A C23 C22 H22 290.4 180.0
H23A C23 C22 H22A 52.0 299.9
C23 C22 H22 C21 236.8 240.0
H22 C22 C23 H23 51.5 300.1
H22 C22 C23 H23A 290.4 180.0
C23 C22 H22 H22A 118.4 120.0
H22 C22 C21 C20 189.8 300.0
C21 C22 H22 H22A 241.6 240.0
H22 C22 C21 H21 309.8 60.0
H22 C22 C21 H21A 71.1 180.0
C23 C22 H22A C21 122.2 120.0
H22A C22 C23 H23 173.2 60.0
H22A C22 C23 H23A 52.0 299.9
C23 C22 H22A H22 241.1 240.0
H22A C22 C21 C20 68.1 180.0
C21 C22 H22A H22 118.9 120.0
H22A C22 C21 H21 188.1 300.0
H22A C22 C21 H21A 309.5 60.0
C22 C21 H21 C20 237.5 240.0
H21 C21 C22 H22 309.8 60.0
H21 C21 C22 H22A 188.1 300.0
C22 C21 H21 H21A 118.7 120.0
C20 C21 H21 H21A 241.3 240.0
H21 C21 C20 H20 171.5 60.0
H21 C21 C20 H20A 50.6 300.0
C22 C21 H21A C20 121.7 120.0
H21A C21 C22 H22 71.1 180.0
H21A C21 C22 H22A 309.5 60.0
C22 C21 H21A H21 240.9 240.0
C20 C21 H21A H21 119.1 120.0
H21A C21 C20 H20 50.2 300.0
H21A C21 C20 H20A 289.3 180.0
C19 C20 H20 C21 238.2 240.0
H20 C20 C19 H19 181.9 300.0
C19 C20 H20 H20A 119.1 120.1
H20 C20 C21 H21 171.5 60.0
H20 C20 C21 H21A 50.2 300.0
C21 C20 H20 H20A 240.9 240.0
C19 C20 H20A C21 121.2 120.0
H20A C20 C19 H19 302.8 60.1
C19 C20 H20A H20 240.6 239.9
H20A C20 C21 H21 50.6 300.0
H20A C20 C21 H21A 289.3 180.0
C21 C20 H20A H20 119.4 120.0