PDB Chemical Component P4Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P4Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
H01 |
1.080 |
1.080 |
| C02 |
C01 |
1.396 |
1.388 |
| C02 |
H02 |
1.080 |
1.080 |
| C03 |
C02 |
1.398 |
1.378 |
| C03 |
H03 |
1.080 |
1.080 |
| C04 |
C03 |
1.399 |
1.392 |
| C04 |
C05 |
1.399 |
1.408 |
| C05 |
C06 |
1.411 |
1.398 |
| C06 |
C01 |
1.402 |
1.366 |
| C06 |
H06 |
1.080 |
1.080 |
| N07 |
C04 |
1.368 |
1.377 |
| N07 |
HN07 |
1.000 |
0.969 |
| C08 |
N07 |
1.382 |
1.376 |
| C08 |
C09 |
1.421 |
1.357 |
| C09 |
C05 |
1.438 |
1.461 |
| C09 |
C11 |
1.506 |
1.507 |
| C10 |
C08 |
1.468 |
1.479 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C12 |
C11 |
1.511 |
1.507 |
| C12 |
N22 |
1.358 |
1.320 |
| C13 |
C10 |
1.407 |
1.395 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C13 |
1.400 |
1.380 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C14 |
1.400 |
1.384 |
| C15 |
C16 |
1.398 |
1.383 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C17 |
1.401 |
1.379 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C10 |
1.410 |
1.396 |
| C17 |
H17 |
1.080 |
1.080 |
| N18 |
C12 |
1.349 |
1.314 |
| C19 |
N18 |
1.345 |
1.335 |
| C19 |
C20 |
1.382 |
1.397 |
| C20 |
C21 |
1.384 |
1.403 |
| C21 |
N22 |
1.354 |
1.324 |
| C21 |
O25 |
1.380 |
1.356 |
| C23 |
C19 |
1.471 |
1.480 |
| O24 |
C20 |
1.350 |
1.357 |
| O26 |
C23 |
1.215 |
1.214 |
| O27 |
C23 |
1.317 |
1.348 |
| O27 |
HO27 |
0.950 |
0.967 |
| O24 |
H141 |
0.950 |
0.967 |
| O25 |
H151 |
0.950 |
0.967 |
Bond Angles for P4Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
H01 |
119.6 |
119.8 |
| C06 |
C01 |
H01 |
119.6 |
119.7 |
| C03 |
C02 |
H02 |
119.3 |
119.6 |
| C04 |
C03 |
H03 |
121.6 |
120.1 |
| C04 |
C05 |
C06 |
118.4 |
119.9 |
| C05 |
C06 |
H06 |
120.5 |
120.1 |
| C08 |
N07 |
HN07 |
124.6 |
125.1 |
| C08 |
C09 |
C11 |
132.7 |
126.5 |
| C09 |
C11 |
H11 |
108.3 |
109.5 |
| C09 |
C11 |
H11A |
108.3 |
109.5 |
| H11 |
C11 |
H11A |
110.6 |
109.5 |
| C12 |
C11 |
H11 |
108.3 |
109.4 |
| C12 |
C11 |
H11A |
108.3 |
109.5 |
| N18 |
C12 |
N22 |
124.8 |
122.2 |
| C12 |
N22 |
C21 |
115.3 |
121.0 |
| C14 |
C13 |
H13 |
119.9 |
120.1 |
| C15 |
C14 |
H14 |
119.8 |
119.9 |
| C16 |
C15 |
H15 |
119.9 |
119.9 |
| C15 |
C16 |
C17 |
119.6 |
120.1 |
| C15 |
C16 |
H16 |
120.2 |
119.9 |
| C17 |
C16 |
H16 |
120.2 |
119.9 |
| C16 |
C17 |
H17 |
119.6 |
120.1 |
| C19 |
C20 |
C21 |
115.8 |
118.1 |
| C20 |
C21 |
N22 |
124.1 |
119.0 |
| C20 |
C21 |
O25 |
118.9 |
120.5 |
| N22 |
C21 |
O25 |
117.0 |
120.5 |
| C21 |
O25 |
H151 |
109.5 |
114.0 |
Torsion Angles for P4Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C06 |
C01 |
C02 |
H01 |
180.0 |
180.3 |
| H02 |
C02 |
C01 |
H01 |
360.0 |
360.0 |
| C03 |
C02 |
C01 |
H01 |
180.0 |
180.0 |
| H03 |
C03 |
C02 |
H02 |
0.2 |
360.0 |
| C04 |
C03 |
C02 |
H02 |
180.2 |
180.0 |
| C05 |
C04 |
C03 |
H03 |
179.8 |
180.0 |
| C04 |
C05 |
C06 |
H06 |
180.2 |
180.0 |
| C05 |
C06 |
C01 |
H01 |
179.8 |
179.7 |
| C02 |
C01 |
C06 |
H01 |
180.0 |
179.7 |
| H06 |
C06 |
C01 |
H01 |
359.8 |
0.3 |
| N07 |
C04 |
C03 |
H03 |
360.0 |
0.0 |
| C09 |
C08 |
N07 |
HN07 |
179.2 |
180.0 |
| C08 |
C09 |
C11 |
H11 |
47.8 |
210.0 |
| C08 |
C09 |
C11 |
H11A |
167.8 |
330.0 |
| C09 |
C05 |
C06 |
H06 |
0.4 |
359.6 |
| H11 |
C11 |
C09 |
H11A |
240.0 |
240.0 |
| C12 |
C11 |
C09 |
H11 |
240.0 |
240.0 |
| C12 |
C11 |
C09 |
H11A |
120.0 |
120.0 |
| C10 |
C08 |
N07 |
HN07 |
2.4 |
360.0 |
| C10 |
C08 |
C09 |
C11 |
357.5 |
360.0 |
| C09 |
C11 |
H11 |
H11A |
118.6 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
241.5 |
240.0 |
| C09 |
C11 |
H11A |
H11 |
241.4 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
118.6 |
120.0 |
| C09 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| C09 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| N22 |
C12 |
C11 |
H11 |
195.3 |
330.0 |
| N22 |
C12 |
C11 |
H11A |
75.3 |
210.0 |
| C20 |
C21 |
N22 |
C12 |
0.8 |
0.6 |
| C12 |
N22 |
C21 |
O25 |
180.6 |
180.3 |
| H14 |
C14 |
C13 |
H13 |
358.4 |
0.1 |
| C15 |
C14 |
C13 |
H13 |
178.4 |
180.1 |
| C16 |
C15 |
C14 |
H14 |
180.2 |
180.0 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
179.8 |
| C15 |
C16 |
C17 |
H17 |
181.7 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
0.3 |
359.9 |
| H15 |
C15 |
C16 |
C17 |
179.7 |
179.8 |
| H15 |
C15 |
C16 |
H16 |
359.7 |
0.0 |
| C17 |
C16 |
C15 |
H15 |
179.7 |
179.8 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.2 |
| H16 |
C16 |
C15 |
H15 |
359.7 |
0.0 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
179.8 |
| H16 |
C16 |
C17 |
H17 |
1.7 |
359.7 |
| H17 |
C17 |
C16 |
H16 |
1.7 |
359.7 |
| N18 |
C12 |
C11 |
H11 |
15.9 |
150.3 |
| N18 |
C12 |
C11 |
H11A |
255.9 |
30.3 |
| N18 |
C12 |
N22 |
C21 |
359.1 |
359.4 |
| C19 |
N18 |
C12 |
N22 |
0.8 |
0.3 |
| C19 |
C20 |
C21 |
N22 |
359.4 |
359.7 |
| C19 |
C20 |
C21 |
O25 |
179.6 |
180.0 |
| C12 |
N22 |
C21 |
C20 |
0.8 |
0.6 |
| N22 |
C21 |
C20 |
O25 |
179.8 |
179.7 |
| C20 |
C21 |
O25 |
H151 |
179.8 |
90.0 |
| C20 |
C21 |
N22 |
O25 |
180.2 |
180.3 |
| N22 |
C21 |
O25 |
H151 |
360.0 |
270.3 |
| C20 |
C21 |
O25 |
N22 |
179.8 |
179.7 |
| O24 |
C20 |
C21 |
O25 |
359.9 |
0.0 |