PDB Chemical Component P4O

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for P4O

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C19	C20	1.384	1.401
C19	C18	1.384	1.388
C19	H19	1.103	1.089
C20	C25	1.416	1.405
C20	C21	1.401	1.411
C25	C24	1.398	1.392
C25	H25	1.103	1.088
C24	C23	1.408	1.389
C24	H24	1.103	1.085
C23	C22	1.406	1.397
C23	H23	1.103	1.086
C22	C21	1.404	1.392
C22	H22	1.103	1.088
C21	N16	1.346	1.346
N16	C17	1.326	1.353
C17	C18	1.398	1.380
C17	H17	1.103	1.087
C18	C14	1.409	1.443
C14	C13	1.396	1.386
C14	N15	1.343	1.352
C13	C12	1.385	1.389
C13	H13	1.104	1.087
N15	C10	1.312	1.351
C10	C11	1.386	1.386
C10	H10	1.103	1.085
C11	C12	1.384	1.391
C11	H11	1.103	1.085
C12	C2	1.391	1.444
C2	C3	1.336	1.381
C2	N1	1.338	1.373
C3	C4	1.331	1.416
C3	H3	1.104	1.081
C4	C6	1.389	1.451
C4	C5	1.389	1.378
C6	O26	1.222	1.227
C6	N7	1.398	1.395
N7	C8	1.529	1.467
N7	H7	1.020	1.016
C8	H8C2	1.115	1.095
C8	C9	1.534	1.533
C8	H8C1	1.115	1.097
C9	H9C1	1.114	1.095
C9	H9C2	1.115	1.097
C9	C5	1.526	1.481
C5	N1	1.331	1.365
N1	H1	1.020	1.011

Bond Angles for P4O

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C20	C19	C18	119.8	120.2
C20	C19	H19	120.1	119.9
C19	C20	C25	120.1	121.6
C19	C20	C21	119.0	118.1
C18	C19	H19	120.1	119.9
C19	C18	C17	118.2	117.5
C19	C18	C14	120.6	121.3
C25	C20	C21	120.9	120.3
C20	C25	C24	120.1	120.4
C20	C25	H25	120.6	120.7
C20	C21	C22	119.0	118.1
C20	C21	N16	120.3	121.8
C24	C25	H25	119.3	118.9
C25	C24	C23	118.7	119.6
C25	C24	H24	120.3	120.2
C23	C24	H24	121.1	120.2
C24	C23	C22	121.4	120.0
C24	C23	H23	119.4	120.1
C22	C23	H23	119.2	119.9
C23	C22	C21	119.9	121.6
C23	C22	H22	120.1	118.6
C21	C22	H22	120.0	119.8
C22	C21	N16	120.6	120.1
C21	N16	C17	120.9	118.2
N16	C17	C18	121.7	124.2
N16	C17	H17	116.4	114.3
C18	C17	H17	121.9	121.6
C17	C18	C14	121.2	121.2
C18	C14	C13	121.3	121.0
C18	C14	N15	118.8	115.0
C13	C14	N15	119.9	124.0
C14	C13	C12	119.2	117.9
C14	C13	H13	120.8	121.0
C14	N15	C10	121.8	116.4
C12	C13	H13	120.0	121.1
C13	C12	C11	118.7	119.8
C13	C12	C2	121.3	120.1
N15	C10	C11	120.9	124.1
N15	C10	H10	116.8	115.2
C11	C10	H10	122.3	120.7
C10	C11	C12	119.5	117.8
C10	C11	H11	120.3	120.2
C12	C11	H11	120.2	121.9
C11	C12	C2	119.9	120.0
C12	C2	C3	125.9	129.9
C12	C2	N1	125.4	121.9
C3	C2	N1	108.8	108.3
C2	C3	C4	108.6	107.2
C2	C3	H3	125.9	125.5
C2	N1	C5	108.4	108.9
C2	N1	H1	112.6	125.3
C4	C3	H3	125.6	127.4
C3	C4	C6	134.2	131.6
C3	C4	C5	107.0	107.0
C6	C4	C5	118.7	121.3
C4	C6	O26	119.7	122.4
C4	C6	N7	119.9	114.1
C4	C5	C9	124.9	125.1
C4	C5	N1	107.2	108.7
O26	C6	N7	120.4	123.5
C6	N7	C8	121.9	124.1
C6	N7	H7	114.4	117.5
C8	N7	H7	123.6	117.5
N7	C8	H8C2	111.4	108.1
N7	C8	C9	111.7	113.2
N7	C8	H8C1	111.4	106.3
C9	C8	H8C2	111.4	110.9
H8C1	C8	H8C2	99.0	108.0
C9	C8	H8C1	111.4	110.1
C8	C9	H9C1	112.3	110.4
C8	C9	H9C2	112.3	109.7
C8	C9	C5	109.1	107.8
H9C1	C9	H9C2	98.1	108.0
C5	C9	H9C1	112.4	112.0
C5	C9	H9C2	112.3	108.8
C9	C5	N1	127.8	126.2
C5	N1	H1	112.6	125.8

Torsion Angles for P4O

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	C19	C20	H19	180.0	180.0
C20	C19	C18	C17	0.6	360.0
C20	C19	C18	C14	181.8	180.0
C25	C20	C19	C21	180.0	180.0
C19	C20	C25	C24	179.2	180.0
C19	C20	C25	H25	359.2	360.0
C19	C20	C21	C22	180.8	180.0
C19	C20	C21	N16	0.0	0.0
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	C25	179.5	180.0
C18	C19	C20	C21	359.4	0.0
N16	C17	C18	C19	359.9	0.0
C19	C18	C17	H17	179.9	180.0
C17	C18	C19	C14	178.9	180.0
C19	C18	C14	C13	334.1	150.0
C19	C18	C14	N15	151.6	330.0
C20	C19	H19	C18	180.0	180.0
H19	C19	C20	C25	359.5	0.0
H19	C19	C20	C21	179.4	180.0
H19	C19	C18	C17	180.6	180.0
H19	C19	C18	C14	1.8	0.0
C25	C20	C19	C18	179.5	180.0
C25	C20	C19	H19	359.5	0.0
C19	C20	C25	C21	180.0	180.0
C25	C20	C21	C22	0.8	360.0
C25	C20	C21	N16	180.0	180.0
C24	C25	C20	H25	180.0	180.0
C20	C25	C24	C23	0.2	0.0
C20	C25	C24	H24	180.2	180.0
C21	C20	C19	C18	359.4	0.0
C21	C20	C19	H19	179.4	180.0
C19	C20	C21	C25	180.0	180.0
C21	C20	C25	C24	359.2	0.0
C21	C20	C25	H25	179.2	180.0
C23	C22	C21	C20	359.7	360.0
C20	C21	C22	H22	179.8	180.1
C22	C21	C20	N16	180.8	180.0
C20	C21	N16	C17	0.5	360.0
C24	C25	C20	C21	359.2	0.0
C20	C25	C24	H25	180.0	180.0
C23	C24	C25	H24	180.0	180.0
C25	C24	C23	C22	0.3	359.9
C25	C24	C23	H23	180.3	180.0
H25	C25	C20	C21	179.2	180.0
C20	C25	H25	C24	180.0	180.0
H25	C25	C24	C23	180.2	180.0
H25	C25	C24	H24	0.2	360.0
C23	C24	C25	H25	180.2	180.0
C25	C24	C23	H24	180.0	180.0
C22	C23	C24	H23	180.0	179.9
C24	C23	C22	C21	359.7	0.1
C24	C23	C22	H22	179.7	180.0
H24	C24	C25	H25	0.2	360.0
C25	C24	H24	C23	180.0	180.0
H24	C24	C23	C22	180.3	180.0
H24	C24	C23	H23	0.3	0.0
C20	C21	C22	C23	359.7	360.0
C22	C23	C24	H24	180.3	180.0
C24	C23	C22	H23	180.0	180.1
C21	C22	C23	H22	180.0	180.1
C23	C22	C21	N16	180.5	180.0
H23	C23	C24	H24	0.3	0.0
C24	C23	H23	C22	180.0	179.9
H23	C23	C22	C21	179.7	180.0
H23	C23	C22	H22	359.7	359.9
C20	C21	C22	N16	179.2	180.0
C21	C22	C23	H23	179.7	180.0
C23	C22	C21	H22	180.0	179.9
C22	C21	N16	C17	179.6	180.0
H22	C22	C23	H23	359.7	359.9
C23	C22	H22	C21	180.0	180.1
H22	C22	C21	N16	0.6	0.1
C20	C21	N16	C22	180.8	180.0
N16	C21	C22	H22	0.6	0.1
C21	N16	C17	C18	359.6	360.0
C21	N16	C17	H17	179.6	180.0
C19	C18	C17	N16	359.9	0.0
C18	C17	N16	H17	180.0	180.0
N16	C17	C18	C14	178.7	180.0
C17	C18	C19	H19	180.6	180.0
C19	C18	C17	C14	181.1	180.0
N16	C17	C18	H17	180.0	180.0
C17	C18	C14	C13	155.3	330.0
C17	C18	C14	N15	332.8	150.0
N16	C17	H17	C18	180.0	180.0
H17	C17	C18	C14	358.7	360.0
C14	C18	C19	H19	1.8	0.0
C19	C18	C14	C17	178.8	180.0
C14	C18	C17	H17	358.7	360.0
C13	C14	C18	N15	182.5	180.0
C18	C14	C13	C12	180.1	180.0
C18	C14	C13	H13	0.1	360.0
C18	C14	N15	C10	180.5	180.0
C18	C14	C13	N15	177.4	180.0
C13	C14	N15	C10	358.0	0.1
C12	C13	C14	H13	180.0	180.0
C14	C13	C12	C11	357.8	0.0
C14	C13	C12	C2	178.6	180.0
C18	C14	N15	C13	182.5	180.0
N15	C14	C13	C12	2.7	360.0
N15	C14	C13	H13	182.7	179.9
C14	N15	C10	C11	0.9	360.0
C14	N15	C10	H10	180.8	180.0
C12	C13	C14	N15	2.7	360.0
C14	C13	C12	H13	180.0	180.0
C10	C11	C12	C13	1.1	360.0
C13	C12	C11	H11	181.1	180.0
C11	C12	C13	C2	179.2	180.0
C13	C12	C2	C3	189.4	210.0
C13	C12	C2	N1	10.2	30.3
H13	C13	C14	N15	182.7	179.9
C14	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	177.8	180.0
H13	C13	C12	C2	358.6	0.0
C11	C10	N15	H10	180.0	180.0
N15	C10	C11	C12	359.6	0.0
N15	C10	C11	H11	179.6	180.0
C13	C12	C11	C10	1.1	360.0
N15	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C2	180.3	180.0
N15	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	179.6	180.0
H10	C10	C11	H11	359.6	0.0
C11	C12	C13	H13	177.8	180.0
C13	C12	C11	C2	180.8	180.0
C12	C11	C10	H10	179.6	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C2	C3	10.2	30.0
C11	C12	C2	N1	191.1	210.3
H11	C11	C10	H10	359.6	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	C2	0.3	360.0
C2	C12	C13	H13	358.6	0.0
C13	C12	C2	C11	179.2	180.0
C2	C12	C11	H11	0.3	360.0
C3	C2	C12	N1	179.2	179.7
C12	C2	C3	C4	181.2	179.9
C12	C2	C3	H3	1.2	360.0
C12	C2	N1	C5	178.2	179.8
C12	C2	N1	H1	52.9	0.3
C12	C2	C3	N1	180.7	180.3
C3	C2	N1	C5	358.9	0.0
C3	C2	N1	H1	233.6	180.6
C4	C3	C2	H3	180.0	179.9
C2	C3	C4	C6	179.3	179.3
C2	C3	C4	C5	0.3	0.7
C12	C2	N1	C3	179.3	179.7
N1	C2	C3	C4	0.5	359.6
N1	C2	C3	H3	180.5	179.7
C4	C5	N1	C2	1.3	0.4
C9	C5	N1	C2	178.7	181.3
C5	N1	C2	H1	125.3	179.4
C4	C3	C2	N1	0.5	359.6
C2	C3	C4	H3	180.0	180.1
C6	C4	C3	C5	179.0	178.6
C3	C4	C6	O26	343.2	351.9
C3	C4	C6	N7	164.7	172.9
C3	C4	C5	C9	181.5	178.5
C3	C4	C5	N1	359.0	359.3
H3	C3	C2	N1	180.5	179.7
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C6	359.3	359.2
H3	C3	C4	C5	180.3	180.6
C6	C4	C3	H3	359.3	359.2
C3	C4	C6	C5	181.1	181.5
C6	C4	C5	C9	2.3	359.7
C6	C4	C5	N1	179.8	180.5
O26	C6	C4	N7	178.4	179.0
C4	C6	N7	C8	358.5	348.2
C4	C6	N7	H7	178.5	179.3
C2	N1	C5	C4	1.3	0.4
C5	C4	C3	H3	180.3	180.6
C3	C4	C5	C6	179.2	178.8
C5	C4	C6	O26	162.1	170.3
C5	C4	C6	N7	343.7	351.4
C8	C9	C5	C4	26.9	25.9
C4	C5	C9	H9C1	261.7	147.5
C4	C5	C9	H9C2	152.2	266.9
C9	C5	C4	N1	182.5	179.1
C4	C5	N1	H1	126.6	179.8
O26	C6	C4	C5	162.1	170.3
C4	C6	O26	N7	181.6	181.1
O26	C6	N7	C8	180.1	169.3
O26	C6	N7	H7	0.1	0.3
N7	C6	C4	C5	343.7	351.4
C4	C6	N7	O26	178.4	179.0
C8	N7	C6	H7	180.0	168.9
C6	N7	C8	H8C2	156.6	162.0
C6	N7	C8	C9	31.4	38.8
C6	N7	C8	H8C1	266.1	277.8
C6	N7	C8	H7	180.0	191.1
C9	C8	N7	H8C2	234.7	236.8
H8C1	C8	N7	H8C2	109.5	115.8
C9	C8	N7	H8C1	125.3	121.0
N7	C8	C9	H9C1	85.3	195.8
N7	C8	C9	H9C2	194.7	76.8
N7	C8	C9	C5	320.0	318.4
C6	N7	H7	C8	180.0	169.7
H7	N7	C8	H8C2	336.6	331.0
H7	N7	C8	C9	211.4	207.7
H7	N7	C8	H8C1	86.1	86.7
H8C2	C8	N7	H7	336.6	331.0
N7	C8	H8C2	C9	234.6	235.4
N7	C8	H8C2	H8C1	117.3	114.6
C9	C8	H8C2	H8C1	242.7	239.2
H8C2	C8	C9	H9C1	320.0	74.1
H8C2	C8	C9	H9C2	69.5	315.2
H8C2	C8	C9	C5	194.7	196.7
C4	C5	C9	C8	26.9	25.9
C9	C8	N7	H7	211.4	207.7
N7	C8	C9	H8C2	125.3	121.7
N7	C8	C9	H8C1	234.7	241.2
H8C1	C8	C9	H8C2	250.5	240.5
H9C1	C9	C8	H9C2	250.5	118.9
C5	C9	C8	H9C1	234.7	122.7
C5	C9	C8	H9C2	125.3	241.6
C8	C9	C5	N1	209.9	204.8
H8C1	C8	N7	H7	86.1	86.7
N7	C8	H8C1	H8C2	242.7	244.2
N7	C8	H8C1	C9	125.4	122.9
C9	C8	H8C1	H8C2	117.3	121.3
H8C1	C8	C9	H9C1	210.5	314.5
H8C1	C8	C9	H9C2	320.0	195.6
H8C1	C8	C9	C5	85.3	77.2
H9C1	C9	C8	H8C2	320.0	74.1
H9C1	C9	C8	H8C1	210.5	314.5
C8	C9	H9C1	H9C2	118.3	240.1
C8	C9	H9C1	C5	236.5	120.2
C5	C9	H9C1	H9C2	241.7	119.9
H9C1	C9	C5	N1	84.7	326.5
H9C2	C9	C8	H8C2	69.5	315.2
H9C2	C9	C8	H8C1	320.0	195.6
C8	C9	H9C2	H9C1	241.7	120.3
C8	C9	H9C2	C5	123.5	242.2
C5	C9	H9C2	H9C1	118.3	238.1
H9C2	C9	C5	N1	335.2	85.9
C2	N1	C5	C9	178.7	181.3
C4	C5	C9	N1	177.0	181.0
C5	C9	C8	H8C2	194.7	196.7
C5	C9	C8	H8C1	85.3	77.2
C8	C9	C5	H9C1	125.2	238.4
C8	C9	C5	H9C2	234.7	119.0
H9C1	C9	C5	H9C2	109.5	240.6
C9	C5	N1	H1	304.0	0.7
C2	N1	C5	H1	234.7	180.6
C4	C5	N1	C9	182.6	179.1
N1	C5	C9	H9C1	84.7	326.5
N1	C5	C9	H9C2	335.2	85.9
C2	N1	H1	C5	122.9	179.3