PDB Chemical Component P49
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P49
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
N2 |
1.347 |
1.324 |
C1 |
C5 |
1.424 |
1.382 |
N2 |
C3 |
1.340 |
1.326 |
C3 |
N4 |
1.330 |
1.327 |
C3 |
N15 |
1.443 |
1.385 |
N4 |
C6 |
1.346 |
1.324 |
C5 |
C6 |
1.462 |
1.403 |
C5 |
C8 |
1.558 |
1.501 |
C6 |
C10 |
1.437 |
1.473 |
C7 |
C8 |
1.570 |
1.528 |
C7 |
C9 |
1.563 |
1.501 |
C9 |
C10 |
1.425 |
1.378 |
C9 |
C13 |
1.391 |
1.396 |
C10 |
N11 |
1.417 |
1.348 |
N11 |
N12 |
1.356 |
1.291 |
N11 |
C14 |
1.494 |
1.465 |
N12 |
C13 |
1.388 |
1.325 |
C13 |
C22 |
1.523 |
1.476 |
N15 |
C16 |
1.453 |
1.398 |
C16 |
C17 |
1.435 |
1.389 |
C16 |
C21 |
1.428 |
1.389 |
C17 |
C18 |
1.418 |
1.382 |
C18 |
C19 |
1.419 |
1.382 |
C19 |
C20 |
1.420 |
1.382 |
C20 |
C21 |
1.419 |
1.381 |
C22 |
O23 |
1.372 |
1.348 |
C22 |
O24 |
1.231 |
1.215 |
C1 |
H1 |
1.080 |
1.080 |
N15 |
H15 |
1.000 |
0.970 |
C8 |
H81C |
1.100 |
1.089 |
C8 |
H82C |
1.100 |
1.090 |
C7 |
H71C |
1.100 |
1.090 |
C7 |
H72C |
1.100 |
1.090 |
C14 |
H141 |
1.101 |
1.090 |
C14 |
H142 |
1.099 |
1.090 |
C14 |
H143 |
1.100 |
1.090 |
C17 |
H17 |
1.080 |
1.080 |
C21 |
H21 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
C19 |
H19 |
1.080 |
1.081 |
C20 |
H20 |
1.080 |
1.081 |
O23 |
H23 |
0.950 |
0.968 |
Bond Angles for P49
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C5 |
121.2 |
119.1 |
C1 |
N2 |
C3 |
118.5 |
121.4 |
N2 |
C1 |
H1 |
119.4 |
120.4 |
C1 |
C5 |
C6 |
116.0 |
117.9 |
C1 |
C5 |
C8 |
122.0 |
120.8 |
C5 |
C1 |
H1 |
119.4 |
120.5 |
N2 |
C3 |
N4 |
125.1 |
121.5 |
N2 |
C3 |
N15 |
121.0 |
119.2 |
N4 |
C3 |
N15 |
113.8 |
119.3 |
C3 |
N4 |
C6 |
119.6 |
120.1 |
C3 |
N15 |
C16 |
136.1 |
120.0 |
C3 |
N15 |
H15 |
111.9 |
119.9 |
N4 |
C6 |
C5 |
119.5 |
119.9 |
N4 |
C6 |
C10 |
121.0 |
123.0 |
C6 |
C5 |
C8 |
121.9 |
121.3 |
C5 |
C6 |
C10 |
119.4 |
117.2 |
C5 |
C8 |
C7 |
115.1 |
112.5 |
C5 |
C8 |
H81C |
107.6 |
108.9 |
C5 |
C8 |
H82C |
106.3 |
108.9 |
C6 |
C10 |
C9 |
122.6 |
120.3 |
C6 |
C10 |
N11 |
130.1 |
132.6 |
C8 |
C7 |
C9 |
114.3 |
109.7 |
C7 |
C8 |
H81C |
107.6 |
108.9 |
C7 |
C8 |
H82C |
106.3 |
108.8 |
C8 |
C7 |
H71C |
107.9 |
109.5 |
C8 |
C7 |
H72C |
106.8 |
109.4 |
C7 |
C9 |
C10 |
121.9 |
122.6 |
C7 |
C9 |
C13 |
131.4 |
131.7 |
C9 |
C7 |
H71C |
107.9 |
109.4 |
C9 |
C7 |
H72C |
106.8 |
109.4 |
C10 |
C9 |
C13 |
106.6 |
105.6 |
C9 |
C10 |
N11 |
107.3 |
107.0 |
C9 |
C13 |
N12 |
108.6 |
107.1 |
C9 |
C13 |
C22 |
127.5 |
126.4 |
C10 |
N11 |
N12 |
107.8 |
109.7 |
C10 |
N11 |
C14 |
132.5 |
125.1 |
N12 |
N11 |
C14 |
119.7 |
125.2 |
N11 |
N12 |
C13 |
109.8 |
110.5 |
N11 |
C14 |
H141 |
109.5 |
109.5 |
N11 |
C14 |
H142 |
109.5 |
109.5 |
N11 |
C14 |
H143 |
109.4 |
109.5 |
N12 |
C13 |
C22 |
124.0 |
126.5 |
C13 |
C22 |
O23 |
112.4 |
120.0 |
C13 |
C22 |
O24 |
124.0 |
120.0 |
N15 |
C16 |
C17 |
123.5 |
120.0 |
N15 |
C16 |
C21 |
117.4 |
120.1 |
C16 |
N15 |
H15 |
111.9 |
120.1 |
C17 |
C16 |
C21 |
119.1 |
119.9 |
C16 |
C17 |
C18 |
120.3 |
119.9 |
C16 |
C17 |
H17 |
119.9 |
120.1 |
C16 |
C21 |
C20 |
120.5 |
119.9 |
C16 |
C21 |
H21 |
119.8 |
120.0 |
C17 |
C18 |
C19 |
120.0 |
120.0 |
C18 |
C17 |
H17 |
119.9 |
120.0 |
C17 |
C18 |
H18 |
120.0 |
120.0 |
C18 |
C19 |
C20 |
120.4 |
120.2 |
C19 |
C18 |
H18 |
120.0 |
120.0 |
C18 |
C19 |
H19 |
119.8 |
119.9 |
C19 |
C20 |
C21 |
119.8 |
120.1 |
C20 |
C19 |
H19 |
119.8 |
119.9 |
C19 |
C20 |
H20 |
120.1 |
120.0 |
C20 |
C21 |
H21 |
119.7 |
120.1 |
C21 |
C20 |
H20 |
120.1 |
119.9 |
O23 |
C22 |
O24 |
123.6 |
120.0 |
C22 |
O23 |
H23 |
109.5 |
117.0 |
H81C |
C8 |
H82C |
114.1 |
108.7 |
H71C |
C7 |
H72C |
113.3 |
109.4 |
H141 |
C14 |
H142 |
109.4 |
109.5 |
H141 |
C14 |
H143 |
109.5 |
109.5 |
H142 |
C14 |
H143 |
109.5 |
109.4 |
Torsion Angles for P49
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C5 |
C6 |
0.2 |
358.4 |
N2 |
C1 |
C5 |
C8 |
176.5 |
176.4 |
C5 |
C1 |
N2 |
H1 |
180.0 |
180.3 |
C1 |
N2 |
C3 |
N4 |
359.8 |
0.9 |
C1 |
N2 |
C3 |
N15 |
180.0 |
180.9 |
C5 |
C1 |
N2 |
C3 |
0.1 |
359.9 |
N2 |
C1 |
C5 |
H1 |
180.0 |
179.7 |
N4 |
C6 |
C5 |
C1 |
359.7 |
2.5 |
C6 |
C5 |
C1 |
C8 |
183.7 |
182.0 |
C1 |
C5 |
C6 |
C10 |
177.6 |
183.0 |
C1 |
C5 |
C8 |
C7 |
200.7 |
146.7 |
C1 |
C5 |
C8 |
H81C |
320.7 |
267.6 |
C1 |
C5 |
C8 |
H82C |
83.3 |
26.0 |
C3 |
N2 |
C1 |
C5 |
0.1 |
359.9 |
C3 |
N2 |
C1 |
H1 |
180.1 |
179.6 |
N4 |
C3 |
N2 |
N15 |
179.8 |
180.0 |
N2 |
C3 |
N4 |
C6 |
0.1 |
360.0 |
N2 |
C3 |
N15 |
C16 |
179.9 |
354.4 |
N2 |
C3 |
N15 |
H15 |
359.9 |
174.5 |
N2 |
C3 |
N4 |
N15 |
180.2 |
180.0 |
N4 |
C3 |
N15 |
C16 |
0.1 |
174.4 |
N4 |
C3 |
N15 |
H15 |
180.1 |
354.5 |
C3 |
N4 |
C6 |
C5 |
0.2 |
358.3 |
C3 |
N4 |
C6 |
C10 |
182.3 |
177.7 |
N2 |
C3 |
N15 |
N4 |
179.8 |
180.0 |
N15 |
C3 |
N4 |
C6 |
179.9 |
180.0 |
C3 |
N15 |
C16 |
C17 |
321.9 |
146.6 |
C3 |
N15 |
C16 |
C21 |
141.9 |
326.3 |
C16 |
N15 |
C3 |
H15 |
180.0 |
179.9 |
C1 |
C5 |
C6 |
N4 |
359.7 |
2.5 |
C6 |
N4 |
C3 |
N15 |
179.9 |
180.0 |
N4 |
C6 |
C5 |
C8 |
183.4 |
184.5 |
C5 |
C6 |
N4 |
C10 |
177.9 |
180.6 |
N4 |
C6 |
C10 |
C9 |
166.2 |
193.9 |
N4 |
C6 |
C10 |
N11 |
346.4 |
13.9 |
C1 |
C5 |
C6 |
C8 |
176.3 |
178.0 |
C6 |
C5 |
C1 |
H1 |
180.2 |
178.7 |
N4 |
C6 |
C5 |
C10 |
182.1 |
179.5 |
C6 |
C5 |
C8 |
C7 |
16.8 |
324.6 |
C6 |
C5 |
C8 |
H81C |
136.8 |
85.5 |
C6 |
C5 |
C8 |
H82C |
259.4 |
203.9 |
C5 |
C6 |
C10 |
C9 |
348.4 |
13.3 |
C5 |
C6 |
C10 |
N11 |
168.5 |
193.4 |
C1 |
C5 |
C8 |
C6 |
183.9 |
182.1 |
C8 |
C5 |
C1 |
H1 |
356.5 |
356.7 |
C8 |
C5 |
C6 |
C10 |
1.3 |
5.0 |
C5 |
C8 |
C7 |
C9 |
336.0 |
45.4 |
C7 |
C8 |
C5 |
H81C |
240.0 |
239.2 |
C7 |
C8 |
C5 |
H82C |
117.4 |
120.7 |
C5 |
C8 |
C7 |
H71C |
96.1 |
165.4 |
C5 |
C8 |
C7 |
H72C |
218.2 |
285.3 |
H81C |
C8 |
C5 |
H82C |
237.4 |
241.6 |
N4 |
C6 |
C10 |
C5 |
177.9 |
180.6 |
C10 |
C6 |
C5 |
C8 |
1.3 |
5.0 |
C7 |
C9 |
C10 |
C6 |
2.5 |
1.1 |
C6 |
C10 |
C9 |
C13 |
180.1 |
181.0 |
C9 |
C10 |
C6 |
N11 |
179.8 |
179.9 |
C6 |
C10 |
N11 |
N12 |
179.9 |
179.0 |
C6 |
C10 |
N11 |
C14 |
359.9 |
359.1 |
C5 |
C8 |
C7 |
H81C |
120.0 |
120.9 |
C5 |
C8 |
C7 |
H82C |
242.6 |
239.3 |
C8 |
C7 |
C9 |
C10 |
15.8 |
329.2 |
C8 |
C7 |
C9 |
C13 |
198.9 |
149.3 |
C9 |
C7 |
C8 |
H71C |
240.0 |
239.9 |
C9 |
C7 |
C8 |
H72C |
117.9 |
120.0 |
H81C |
C8 |
C7 |
H82C |
122.6 |
118.4 |
H71C |
C7 |
C8 |
H72C |
237.9 |
240.1 |
C6 |
C10 |
C9 |
C7 |
2.5 |
1.1 |
C9 |
C7 |
C8 |
H81C |
216.1 |
284.5 |
C9 |
C7 |
C8 |
H82C |
93.5 |
166.1 |
C8 |
C7 |
C9 |
H71C |
120.0 |
120.1 |
C8 |
C7 |
C9 |
H72C |
242.2 |
239.9 |
C10 |
C9 |
C7 |
C13 |
176.9 |
179.9 |
C7 |
C9 |
C10 |
N11 |
182.4 |
181.0 |
C7 |
C9 |
C13 |
N12 |
177.3 |
179.2 |
C7 |
C9 |
C13 |
C22 |
357.3 |
359.3 |
H71C |
C7 |
C9 |
H72C |
122.2 |
119.8 |
C6 |
C10 |
C9 |
N11 |
180.1 |
180.1 |
C7 |
C9 |
C10 |
C13 |
182.4 |
180.1 |
C10 |
C9 |
C7 |
H71C |
255.8 |
209.1 |
C10 |
C9 |
C7 |
H72C |
133.6 |
89.3 |
C10 |
C9 |
C13 |
N12 |
360.0 |
359.3 |
C10 |
C9 |
C13 |
C22 |
180.0 |
179.4 |
C9 |
C10 |
N11 |
N12 |
0.0 |
359.1 |
C9 |
C10 |
N11 |
C14 |
180.1 |
179.2 |
C7 |
C9 |
C13 |
C10 |
177.3 |
179.9 |
C13 |
C9 |
C7 |
H71C |
78.9 |
29.2 |
C13 |
C9 |
C7 |
H72C |
316.7 |
269.4 |
C13 |
C9 |
C10 |
N11 |
360.0 |
1.0 |
N11 |
N12 |
C13 |
C9 |
0.0 |
0.1 |
N12 |
C13 |
C9 |
C22 |
180.0 |
179.9 |
C9 |
C13 |
C22 |
O23 |
180.0 |
180.0 |
C9 |
C13 |
C22 |
O24 |
360.0 |
359.9 |
C6 |
C10 |
N11 |
C9 |
179.8 |
179.9 |
N11 |
C10 |
C9 |
C13 |
360.0 |
1.0 |
N12 |
N11 |
C10 |
C14 |
180.0 |
179.9 |
C10 |
N11 |
N12 |
C13 |
360.0 |
0.5 |
C10 |
N11 |
C14 |
H141 |
130.2 |
90.0 |
C10 |
N11 |
C14 |
H142 |
250.1 |
210.0 |
C10 |
N11 |
C14 |
H143 |
10.1 |
329.9 |
C9 |
C13 |
N12 |
N11 |
0.0 |
0.1 |
C10 |
N11 |
N12 |
C14 |
180.0 |
180.1 |
N12 |
N11 |
C14 |
H141 |
310.2 |
270.1 |
N12 |
N11 |
C14 |
H142 |
70.2 |
30.1 |
N12 |
N11 |
C14 |
H143 |
190.2 |
150.0 |
N11 |
N12 |
C13 |
C22 |
180.0 |
180.0 |
C10 |
N11 |
C14 |
N12 |
180.0 |
179.9 |
C14 |
N11 |
N12 |
C13 |
179.9 |
180.4 |
H141 |
C14 |
N11 |
H142 |
240.0 |
240.0 |
H141 |
C14 |
N11 |
H143 |
120.0 |
120.1 |
H142 |
C14 |
N11 |
H143 |
240.0 |
240.1 |
C9 |
C13 |
N12 |
C22 |
180.0 |
180.1 |
C13 |
N12 |
N11 |
C14 |
179.9 |
180.4 |
N12 |
C13 |
C22 |
O23 |
359.9 |
0.0 |
N12 |
C13 |
C22 |
O24 |
179.9 |
180.0 |
C9 |
C13 |
C22 |
N12 |
180.0 |
179.9 |
O23 |
C22 |
C13 |
O24 |
180.0 |
180.0 |
C13 |
C22 |
O23 |
H23 |
180.0 |
179.9 |
C3 |
N15 |
C16 |
H15 |
180.0 |
180.1 |
C17 |
C16 |
N15 |
C21 |
180.1 |
180.3 |
N15 |
C16 |
C17 |
C18 |
179.9 |
180.0 |
N15 |
C16 |
C17 |
H17 |
359.9 |
359.9 |
N15 |
C16 |
C21 |
C20 |
180.1 |
179.7 |
N15 |
C16 |
C21 |
H21 |
0.1 |
359.9 |
N15 |
C16 |
C17 |
C21 |
179.9 |
179.7 |
C17 |
C16 |
N15 |
H15 |
141.9 |
326.5 |
C17 |
C16 |
C21 |
C20 |
0.0 |
359.4 |
C17 |
C16 |
C21 |
H21 |
180.0 |
179.7 |
C16 |
C17 |
C18 |
C19 |
360.0 |
359.9 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
C16 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
N15 |
C16 |
C21 |
C17 |
180.1 |
180.3 |
C21 |
C16 |
N15 |
H15 |
321.9 |
146.2 |
C21 |
C16 |
C17 |
C18 |
360.0 |
0.3 |
C21 |
C16 |
C17 |
H17 |
180.0 |
180.2 |
C19 |
C20 |
C21 |
C16 |
0.0 |
0.6 |
C20 |
C21 |
C16 |
H21 |
180.0 |
179.8 |
C16 |
C21 |
C20 |
H20 |
180.0 |
180.3 |
C18 |
C17 |
C16 |
C21 |
360.0 |
0.3 |
C16 |
C17 |
C18 |
H17 |
180.0 |
179.9 |
C17 |
C18 |
C19 |
C20 |
0.1 |
0.0 |
C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
H19 |
180.0 |
180.0 |
C19 |
C18 |
C17 |
H17 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
C21 |
359.9 |
359.7 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.1 |
C18 |
C19 |
C20 |
H20 |
180.0 |
179.9 |
C16 |
C21 |
C20 |
C19 |
0.0 |
0.6 |
C20 |
C19 |
C18 |
H18 |
180.1 |
180.0 |
C18 |
C19 |
C20 |
H19 |
180.0 |
179.9 |
C19 |
C20 |
C21 |
H21 |
180.0 |
180.3 |
C21 |
C20 |
C19 |
H20 |
180.0 |
179.8 |
C16 |
C21 |
C20 |
H21 |
180.0 |
180.2 |
C21 |
C20 |
C19 |
H19 |
180.0 |
179.8 |
C19 |
C20 |
C21 |
H20 |
180.0 |
180.2 |
C13 |
C22 |
O23 |
O24 |
180.0 |
180.0 |
C13 |
C22 |
O24 |
O23 |
180.0 |
180.0 |
O24 |
C22 |
O23 |
H23 |
360.0 |
360.0 |
N2 |
C1 |
H1 |
C5 |
180.0 |
180.3 |
H1 |
C1 |
N2 |
C3 |
180.1 |
179.6 |
H1 |
C1 |
C5 |
C6 |
180.2 |
178.7 |
H1 |
C1 |
C5 |
C8 |
356.5 |
356.7 |
C3 |
N15 |
H15 |
C16 |
180.0 |
179.9 |
H15 |
N15 |
C16 |
C17 |
141.9 |
326.5 |
H15 |
N15 |
C16 |
C21 |
321.9 |
146.2 |
C5 |
C8 |
H81C |
C7 |
235.3 |
237.0 |
C5 |
C8 |
H81C |
H82C |
117.7 |
118.5 |
H81C |
C8 |
C7 |
C9 |
216.1 |
284.5 |
C7 |
C8 |
H81C |
H82C |
242.4 |
241.6 |
H81C |
C8 |
C7 |
H71C |
336.1 |
44.5 |
H81C |
C8 |
C7 |
H72C |
98.2 |
164.5 |
C5 |
C8 |
H82C |
C7 |
123.2 |
123.0 |
C5 |
C8 |
H82C |
H81C |
241.6 |
241.4 |
H82C |
C8 |
C7 |
C9 |
93.5 |
166.1 |
C7 |
C8 |
H82C |
H81C |
118.4 |
118.5 |
H82C |
C8 |
C7 |
H71C |
213.5 |
286.2 |
H82C |
C8 |
C7 |
H72C |
335.6 |
46.1 |
C8 |
C7 |
H71C |
C9 |
236.1 |
239.7 |
H71C |
C7 |
C8 |
H81C |
336.1 |
44.5 |
H71C |
C7 |
C8 |
H82C |
213.5 |
286.2 |
C8 |
C7 |
H71C |
H72C |
118.0 |
119.9 |
H71C |
C7 |
C9 |
C10 |
255.8 |
209.1 |
H71C |
C7 |
C9 |
C13 |
78.9 |
29.2 |
C9 |
C7 |
H71C |
H72C |
242.0 |
240.2 |
C8 |
C7 |
H72C |
C9 |
122.7 |
120.2 |
H72C |
C7 |
C8 |
H81C |
98.2 |
164.5 |
H72C |
C7 |
C8 |
H82C |
335.6 |
46.1 |
C8 |
C7 |
H72C |
H71C |
241.4 |
240.1 |
H72C |
C7 |
C9 |
C10 |
133.6 |
89.3 |
H72C |
C7 |
C9 |
C13 |
316.7 |
269.4 |
C9 |
C7 |
H72C |
H71C |
118.7 |
119.8 |
N11 |
C14 |
H141 |
H142 |
120.0 |
120.0 |
N11 |
C14 |
H141 |
H143 |
240.0 |
240.0 |
H142 |
C14 |
H141 |
H143 |
120.0 |
120.0 |
N11 |
C14 |
H142 |
H141 |
240.0 |
240.0 |
N11 |
C14 |
H142 |
H143 |
120.0 |
120.0 |
H141 |
C14 |
H142 |
H143 |
240.0 |
240.0 |
N11 |
C14 |
H143 |
H141 |
120.0 |
120.1 |
N11 |
C14 |
H143 |
H142 |
240.0 |
240.0 |
H141 |
C14 |
H143 |
H142 |
120.0 |
120.0 |
H17 |
C17 |
C16 |
C21 |
180.0 |
180.2 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.1 |
H17 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
H18 |
360.0 |
0.1 |
C16 |
C21 |
H21 |
C20 |
180.0 |
179.8 |
H21 |
C21 |
C20 |
H20 |
360.0 |
0.1 |
C17 |
C18 |
H18 |
C19 |
180.0 |
180.0 |
H18 |
C18 |
C17 |
H17 |
360.0 |
0.1 |
H18 |
C18 |
C19 |
C20 |
180.1 |
180.0 |
H18 |
C18 |
C19 |
H19 |
0.0 |
359.9 |
C18 |
C19 |
H19 |
C20 |
180.0 |
180.1 |
H19 |
C19 |
C18 |
H18 |
0.0 |
359.9 |
H19 |
C19 |
C20 |
C21 |
180.0 |
179.8 |
H19 |
C19 |
C20 |
H20 |
360.0 |
0.0 |
C19 |
C20 |
H20 |
C21 |
180.0 |
179.8 |
H20 |
C20 |
C19 |
H19 |
360.0 |
0.0 |
H20 |
C20 |
C21 |
H21 |
360.0 |
0.1 |
H23 |
O23 |
C22 |
O24 |
360.0 |
360.0 |