Atom Nomenclature for P48

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P48

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
N3 N3
C4 C4
C5 C5
N6 N6
N7 N7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
N17 N17
C18 C18
N19 N19
C20 C20
N21 N21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
N31 N31
C32 C32
C33 C33
C34 C34
H3 H3
H41C H41C
H42C H42C
H43C H43C
H81C H81C
H82C H82C
H83C H83C
H131 H131
H132 H132
H20 H20
H151 H151
H152 H152
H153 H153
H161 H161
H162 H162
H163 H163
H21 H21
H23 H23
H27 H27
H24 H24
H26 H26
H291 H291
H292 H292
H341 H341
H342 H342
H301 H301
H302 H302
H321 H321
H322 H322
H323 H323
H331 H331
H332 H332