Atom Nomenclature for P34

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P34

Atom Name (V3) Atom Name (V2)
CAA CAA
N N
CAB CAB
CA CA
C C
O O
NAM NAM
CAP CAP
CAK CAK
CAU CAU
CAT CAT
CAI CAI
CAF CAF
CAE CAE
CAH CAH
CAS CAS
CAQ CAQ
OAD OAD
NAN NAN
CAR CAR
CAJ CAJ
CAG CAG
HAA1 1HAA
HAA2 2HAA
HAA3 3HAA
HAB1 1HAB
HAB2 2HAB
HAB3 3HAB
HA1 1HA
HA2 2HA
HAM HAM
HAK HAK
HAI HAI
HAF HAF
HAE HAE
HAH HAH
HAN HAN
HAJ HAJ
HAG HAG