Atom Nomenclature for P30

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P30

Atom Name (V3) Atom Name (V2)
N1 N1
C3 C3
O4 O4
N5 N5
C7 C7
C8 C8
C10 C10
C12 C12
C13 C13
C15 C15
C17 C17
C18 C18
N20 N20
C21 C21
N22 N22
S23 S23
C24 C24
C25 C25
C26 C26
C28 C28
C30 C30
C32 C32
O33 O33
C34 C34
C37 C37
N40 N40
C41 C41
C44 C44
O47 O47
C48 C48
C51 C51
C54 C54
N55 N55
O56 O56
C57 C57
C58 C58
C60 C60
C61 C61
C65 C65
C69 C69
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33