PDB Chemical Component P2U

Ideal Model

Chemical Description

Name 2'-DEOXY-PSEUDOURIDINE-5'MONOPHOSPHATE
Formula C9 H13 N2 O8 P
Formal charge 0
Molecular weight 308.182 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 33
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (1R)-1,4-anhydro-2-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-erythro-pentitol
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2,4-dioxo-1H-pyrimidin-5-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1C2=CNC(=O)NC2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H13N2O8P/c12-5-1-6(4-2-10-9(14)11-8(4)13)19-7(5)3-18-20(15,16)17/h2,5-7,12H,1,3H2,(H2,15,16,17)(H2,10,11,13,14)/t5-,6+,7+/m0/s1
InChIKey descriptor QJNQHNJPOXCQQR-RRKCRQDMSA-N

Status Information

Last modified 2011-06-04
Created 2000-03-23
Release status REL
Model PDB code 1EMH
Processing site RCSB