PDB Chemical Component P2T

Ideal Model

Chemical Description

Name 2'-O-PROPYL THYMIDINE-5-MONOPHOSPHATE
Formula C13 H21 N2 O9 P
Formal charge 0
Molecular weight 380.288 g/mol
Component type RNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 46
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 47
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-methyl-2'-O-propyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-4-propoxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) CCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C)COP(=O)(O)O)O
InChI descriptor InChI=1S/C13H21N2O9P/c1-3-4-22-10-9(16)8(6-23-25(19,20)21)24-12(10)15-5-7(2)11(17)14-13(15)18/h5,8-10,12,16H,3-4,6H2,1-2H3,(H,14,17,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1
InChIKey descriptor YCUXLAVNRCJWRL-DNRKLUKYSA-N

Status Information

Last modified 2011-06-04
Created 2004-12-17
Release status REL
Model PDB code 1Y8V
Processing site RCSB