PDB Chemical Component P2H
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P2H
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C7 |
C8 |
1.498 |
1.530 |
C7 |
N12 |
1.463 |
1.465 |
C7 |
H7 |
1.100 |
1.089 |
C7 |
H7A |
1.100 |
1.090 |
C8 |
P9 |
1.833 |
1.823 |
C8 |
O13 |
1.448 |
1.429 |
C8 |
P14 |
1.808 |
1.823 |
P9 |
O10 |
1.516 |
1.610 |
P9 |
O11 |
1.527 |
1.609 |
P9 |
O12 |
1.485 |
1.480 |
N12 |
C13 |
1.398 |
1.319 |
N12 |
C17 |
1.339 |
1.318 |
C13 |
C14 |
1.398 |
1.384 |
C13 |
H13 |
1.080 |
1.079 |
O13 |
HO13 |
0.950 |
0.966 |
C14 |
C15 |
1.414 |
1.384 |
C14 |
H14 |
1.080 |
1.079 |
P14 |
O15 |
1.526 |
1.610 |
P14 |
O16 |
1.523 |
1.610 |
P14 |
O17 |
1.515 |
1.480 |
C15 |
C16 |
1.412 |
1.398 |
C15 |
H15 |
1.080 |
1.081 |
C16 |
C17 |
1.377 |
1.393 |
C16 |
C18 |
1.510 |
1.484 |
C17 |
H17 |
1.080 |
1.080 |
C18 |
C19 |
1.392 |
1.393 |
C18 |
C23 |
1.429 |
1.394 |
C19 |
C20 |
1.402 |
1.380 |
C19 |
H19 |
1.080 |
1.080 |
C20 |
C21 |
1.405 |
1.383 |
C20 |
H20 |
1.080 |
1.080 |
C21 |
C22 |
1.398 |
1.383 |
C21 |
H21 |
1.080 |
1.080 |
C22 |
C23 |
1.388 |
1.380 |
C22 |
H22 |
1.080 |
1.080 |
C23 |
H23 |
1.080 |
1.080 |
O10 |
H131 |
0.949 |
0.967 |
O11 |
H141 |
0.950 |
0.967 |
O15 |
H151 |
0.950 |
0.967 |
O16 |
H16 |
0.950 |
0.966 |
Bond Angles for P2H
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C7 |
N12 |
121.7 |
109.4 |
C8 |
C7 |
H7 |
105.6 |
109.5 |
C8 |
C7 |
H7A |
105.6 |
109.5 |
C7 |
C8 |
P9 |
111.9 |
109.5 |
C7 |
C8 |
O13 |
117.4 |
109.5 |
C7 |
C8 |
P14 |
92.6 |
109.4 |
N12 |
C7 |
H7 |
105.6 |
109.5 |
N12 |
C7 |
H7A |
105.6 |
109.4 |
C7 |
N12 |
C13 |
127.9 |
119.1 |
C7 |
N12 |
C17 |
106.2 |
119.1 |
H7 |
C7 |
H7A |
113.1 |
109.5 |
P9 |
C8 |
O13 |
111.6 |
109.5 |
P9 |
C8 |
P14 |
112.8 |
109.5 |
C8 |
P9 |
O10 |
111.1 |
109.5 |
C8 |
P9 |
O11 |
110.5 |
109.5 |
C8 |
P9 |
O12 |
99.3 |
109.5 |
O13 |
C8 |
P14 |
109.1 |
109.4 |
C8 |
O13 |
HO13 |
109.5 |
113.9 |
C8 |
P14 |
O15 |
106.0 |
109.5 |
C8 |
P14 |
O16 |
105.7 |
109.5 |
C8 |
P14 |
O17 |
106.9 |
109.5 |
O10 |
P9 |
O11 |
113.6 |
109.5 |
O10 |
P9 |
O12 |
112.8 |
109.5 |
P9 |
O10 |
H131 |
109.5 |
114.0 |
O11 |
P9 |
O12 |
108.5 |
109.5 |
P9 |
O11 |
H141 |
109.5 |
114.0 |
C13 |
N12 |
C17 |
125.7 |
121.9 |
N12 |
C13 |
C14 |
114.4 |
121.0 |
N12 |
C13 |
H13 |
122.8 |
119.5 |
N12 |
C17 |
C16 |
121.1 |
120.6 |
N12 |
C17 |
H17 |
119.5 |
119.7 |
C14 |
C13 |
H13 |
122.8 |
119.5 |
C13 |
C14 |
C15 |
120.4 |
119.3 |
C13 |
C14 |
H14 |
119.8 |
120.3 |
C15 |
C14 |
H14 |
119.8 |
120.4 |
C14 |
C15 |
C16 |
121.9 |
118.3 |
C14 |
C15 |
H15 |
119.0 |
120.8 |
O15 |
P14 |
O16 |
115.5 |
109.4 |
O15 |
P14 |
O17 |
111.3 |
109.5 |
P14 |
O15 |
H151 |
109.5 |
114.0 |
O16 |
P14 |
O17 |
110.8 |
109.5 |
P14 |
O16 |
H16 |
109.5 |
114.0 |
C16 |
C15 |
H15 |
119.1 |
120.8 |
C15 |
C16 |
C17 |
115.8 |
118.9 |
C15 |
C16 |
C18 |
126.2 |
120.5 |
C17 |
C16 |
C18 |
116.6 |
120.6 |
C16 |
C17 |
H17 |
119.4 |
119.7 |
C16 |
C18 |
C19 |
122.7 |
120.1 |
C16 |
C18 |
C23 |
119.1 |
120.1 |
C19 |
C18 |
C23 |
118.2 |
119.8 |
C18 |
C19 |
C20 |
118.9 |
119.9 |
C18 |
C19 |
H19 |
120.6 |
120.1 |
C18 |
C23 |
C22 |
123.0 |
119.8 |
C18 |
C23 |
H23 |
118.5 |
120.1 |
C20 |
C19 |
H19 |
120.5 |
120.0 |
C19 |
C20 |
C21 |
122.3 |
120.1 |
C19 |
C20 |
H20 |
118.8 |
120.0 |
C21 |
C20 |
H20 |
118.9 |
119.9 |
C20 |
C21 |
C22 |
119.5 |
120.2 |
C20 |
C21 |
H21 |
120.3 |
119.9 |
C22 |
C21 |
H21 |
120.2 |
119.9 |
C21 |
C22 |
C23 |
118.2 |
120.1 |
C21 |
C22 |
H22 |
120.9 |
120.0 |
C23 |
C22 |
H22 |
120.9 |
119.9 |
C22 |
C23 |
H23 |
118.5 |
120.1 |
Torsion Angles for P2H
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N12 |
C7 |
C8 |
H7 |
240.0 |
240.0 |
N12 |
C7 |
C8 |
H7A |
120.0 |
119.9 |
C8 |
C7 |
N12 |
C13 |
349.6 |
97.3 |
C8 |
C7 |
N12 |
C17 |
165.7 |
277.0 |
H7 |
C7 |
C8 |
H7A |
240.0 |
239.9 |
P9 |
C8 |
C7 |
O13 |
131.1 |
239.9 |
P9 |
C8 |
C7 |
P14 |
244.1 |
120.0 |
C7 |
C8 |
P9 |
O10 |
286.7 |
60.0 |
C7 |
C8 |
P9 |
O11 |
53.8 |
180.0 |
C7 |
C8 |
P9 |
O12 |
167.7 |
300.1 |
O13 |
C8 |
C7 |
P14 |
113.1 |
240.0 |
C7 |
C8 |
O13 |
HO13 |
160.6 |
300.0 |
C7 |
C8 |
P14 |
O15 |
298.6 |
304.8 |
C7 |
C8 |
P14 |
O16 |
175.5 |
64.8 |
C7 |
C8 |
P14 |
O17 |
57.5 |
184.8 |
C8 |
C7 |
N12 |
H7 |
120.0 |
120.0 |
C8 |
C7 |
N12 |
H7A |
240.0 |
240.1 |
N12 |
C7 |
C8 |
P9 |
151.2 |
294.3 |
N12 |
C7 |
C8 |
O13 |
20.1 |
54.4 |
N12 |
C7 |
C8 |
P14 |
267.0 |
174.4 |
H7 |
C7 |
N12 |
H7A |
120.0 |
120.0 |
C13 |
N12 |
C7 |
C17 |
183.9 |
180.3 |
C7 |
N12 |
C13 |
C14 |
172.6 |
180.0 |
C7 |
N12 |
C13 |
H13 |
352.6 |
0.0 |
C7 |
N12 |
C17 |
C16 |
179.6 |
179.8 |
C7 |
N12 |
C17 |
H17 |
359.6 |
0.0 |
C8 |
C7 |
H7 |
N12 |
229.9 |
240.0 |
C8 |
C7 |
H7 |
H7A |
114.9 |
120.1 |
H7 |
C7 |
C8 |
P9 |
271.2 |
54.3 |
H7 |
C7 |
C8 |
O13 |
140.1 |
174.4 |
H7 |
C7 |
C8 |
P14 |
27.0 |
294.4 |
N12 |
C7 |
H7 |
H7A |
245.0 |
240.0 |
H7 |
C7 |
N12 |
C13 |
229.6 |
337.3 |
H7 |
C7 |
N12 |
C17 |
45.7 |
157.0 |
C8 |
C7 |
H7A |
N12 |
130.1 |
119.9 |
C8 |
C7 |
H7A |
H7 |
245.1 |
239.9 |
H7A |
C7 |
C8 |
P9 |
31.1 |
174.4 |
H7A |
C7 |
C8 |
O13 |
260.1 |
294.5 |
H7A |
C7 |
C8 |
P14 |
147.0 |
54.4 |
N12 |
C7 |
H7A |
H7 |
115.0 |
120.0 |
H7A |
C7 |
N12 |
C13 |
109.6 |
217.2 |
H7A |
C7 |
N12 |
C17 |
285.7 |
36.9 |
P9 |
C8 |
C7 |
N12 |
151.2 |
294.3 |
P9 |
C8 |
C7 |
H7 |
271.2 |
54.3 |
P9 |
C8 |
C7 |
H7A |
31.1 |
174.4 |
C7 |
C8 |
P9 |
O13 |
226.1 |
120.1 |
C7 |
C8 |
P9 |
P14 |
102.8 |
240.0 |
O13 |
C8 |
P9 |
P14 |
236.8 |
120.0 |
P9 |
C8 |
O13 |
HO13 |
29.4 |
60.0 |
P9 |
C8 |
P14 |
O15 |
53.7 |
184.8 |
P9 |
C8 |
P14 |
O16 |
290.6 |
304.8 |
P9 |
C8 |
P14 |
O17 |
172.6 |
64.8 |
O10 |
P9 |
C8 |
O11 |
232.9 |
240.0 |
O10 |
P9 |
C8 |
O12 |
119.0 |
120.0 |
C8 |
P9 |
O10 |
H131 |
249.4 |
180.0 |
O11 |
P9 |
C8 |
O12 |
246.1 |
240.0 |
C8 |
P9 |
O11 |
H141 |
107.9 |
300.0 |
O13 |
C8 |
C7 |
N12 |
20.1 |
54.4 |
O13 |
C8 |
C7 |
H7 |
140.1 |
174.4 |
O13 |
C8 |
C7 |
H7A |
260.1 |
294.5 |
C7 |
C8 |
O13 |
P9 |
131.2 |
239.9 |
C7 |
C8 |
O13 |
P14 |
256.5 |
120.0 |
P9 |
C8 |
O13 |
P14 |
125.3 |
240.0 |
O13 |
C8 |
P9 |
O10 |
60.7 |
300.0 |
O13 |
C8 |
P9 |
O11 |
187.8 |
60.0 |
O13 |
C8 |
P9 |
O12 |
301.7 |
180.0 |
O13 |
C8 |
P14 |
O15 |
178.4 |
64.8 |
O13 |
C8 |
P14 |
O16 |
55.3 |
184.8 |
O13 |
C8 |
P14 |
O17 |
297.2 |
304.8 |
P14 |
C8 |
C7 |
N12 |
267.0 |
174.4 |
P14 |
C8 |
C7 |
H7 |
27.0 |
294.4 |
P14 |
C8 |
C7 |
H7A |
147.0 |
54.4 |
C7 |
C8 |
P14 |
P9 |
244.9 |
120.0 |
C7 |
C8 |
P14 |
O13 |
120.3 |
240.0 |
P9 |
C8 |
P14 |
O13 |
235.4 |
120.0 |
P14 |
C8 |
P9 |
O10 |
183.9 |
180.0 |
P14 |
C8 |
P9 |
O11 |
311.0 |
300.0 |
P14 |
C8 |
P9 |
O12 |
64.9 |
60.0 |
P14 |
C8 |
O13 |
HO13 |
264.1 |
180.0 |
O15 |
P14 |
C8 |
O16 |
123.1 |
240.0 |
O15 |
P14 |
C8 |
O17 |
241.1 |
120.0 |
C8 |
P14 |
O15 |
H151 |
116.0 |
55.0 |
O16 |
P14 |
C8 |
O17 |
118.1 |
240.0 |
C8 |
P14 |
O16 |
H16 |
244.6 |
180.0 |
O10 |
P9 |
C8 |
O13 |
60.7 |
300.0 |
O10 |
P9 |
C8 |
P14 |
183.9 |
180.0 |
C8 |
P9 |
O10 |
O11 |
125.4 |
120.0 |
C8 |
P9 |
O10 |
O12 |
249.4 |
240.0 |
O11 |
P9 |
O10 |
O12 |
124.0 |
120.0 |
O10 |
P9 |
O11 |
H141 |
233.6 |
60.0 |
O11 |
P9 |
C8 |
O13 |
187.8 |
60.0 |
O11 |
P9 |
C8 |
P14 |
311.0 |
300.0 |
C8 |
P9 |
O11 |
O10 |
234.3 |
240.0 |
C8 |
P9 |
O11 |
O12 |
107.9 |
120.0 |
O10 |
P9 |
O11 |
O12 |
233.6 |
240.0 |
O11 |
P9 |
O10 |
H131 |
124.0 |
60.0 |
O12 |
P9 |
C8 |
O13 |
301.7 |
180.0 |
O12 |
P9 |
C8 |
P14 |
64.9 |
60.0 |
C8 |
P9 |
O12 |
O10 |
117.8 |
120.0 |
C8 |
P9 |
O12 |
O11 |
244.6 |
240.0 |
O10 |
P9 |
O12 |
O11 |
126.8 |
120.0 |
O12 |
P9 |
O10 |
H131 |
0.0 |
300.0 |
O12 |
P9 |
O11 |
H141 |
360.0 |
179.9 |
C13 |
N12 |
C7 |
H7 |
229.6 |
337.3 |
C13 |
N12 |
C7 |
H7A |
109.6 |
217.2 |
C7 |
N12 |
C13 |
C17 |
175.4 |
179.7 |
C13 |
N12 |
C17 |
C16 |
355.8 |
359.5 |
C13 |
N12 |
C17 |
H17 |
175.8 |
179.7 |
C14 |
C13 |
N12 |
H13 |
180.0 |
180.0 |
N12 |
C13 |
C14 |
C15 |
3.6 |
360.0 |
N12 |
C13 |
C14 |
H14 |
183.6 |
180.0 |
C17 |
N12 |
C7 |
H7 |
45.7 |
157.0 |
C17 |
N12 |
C7 |
H7A |
285.7 |
36.9 |
C7 |
N12 |
C17 |
C13 |
183.8 |
180.3 |
C17 |
N12 |
C13 |
C14 |
357.2 |
0.3 |
C17 |
N12 |
C13 |
H13 |
177.2 |
180.3 |
C15 |
C16 |
C17 |
N12 |
9.7 |
0.5 |
N12 |
C17 |
C16 |
C18 |
177.0 |
180.3 |
C16 |
C17 |
N12 |
H17 |
180.0 |
179.7 |
C14 |
C13 |
N12 |
C17 |
357.2 |
0.3 |
N12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
C16 |
2.2 |
360.0 |
C13 |
C14 |
C15 |
H15 |
182.2 |
179.9 |
H13 |
C13 |
N12 |
C17 |
177.2 |
180.3 |
N12 |
C13 |
H13 |
C14 |
180.0 |
180.0 |
H13 |
C13 |
C14 |
C15 |
183.6 |
180.0 |
H13 |
C13 |
C14 |
H14 |
3.6 |
360.0 |
HO13 |
O13 |
C8 |
P14 |
264.1 |
180.0 |
C15 |
C14 |
C13 |
H13 |
183.6 |
180.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
C17 |
351.2 |
359.8 |
C14 |
C15 |
C16 |
C18 |
185.3 |
180.0 |
H14 |
C14 |
C13 |
H13 |
3.6 |
360.0 |
C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
H14 |
C14 |
C15 |
C16 |
182.2 |
180.0 |
H14 |
C14 |
C15 |
H15 |
2.2 |
360.0 |
C8 |
P14 |
O15 |
O16 |
243.4 |
120.0 |
C8 |
P14 |
O15 |
O17 |
115.9 |
240.0 |
O16 |
P14 |
O15 |
O17 |
232.6 |
120.0 |
O15 |
P14 |
O16 |
H16 |
127.7 |
300.0 |
C8 |
P14 |
O16 |
O15 |
116.9 |
240.0 |
C8 |
P14 |
O16 |
O17 |
244.6 |
120.0 |
O15 |
P14 |
O16 |
O17 |
127.7 |
240.0 |
O16 |
P14 |
O15 |
H151 |
232.6 |
295.0 |
C8 |
P14 |
O17 |
O15 |
244.6 |
120.0 |
C8 |
P14 |
O17 |
O16 |
114.7 |
240.0 |
O15 |
P14 |
O17 |
O16 |
230.1 |
120.0 |
O17 |
P14 |
O15 |
H151 |
0.0 |
175.0 |
O17 |
P14 |
O16 |
H16 |
0.0 |
60.0 |
N12 |
C17 |
C16 |
C15 |
9.7 |
0.5 |
C16 |
C15 |
C14 |
H14 |
182.2 |
180.0 |
C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
C17 |
C16 |
C15 |
C18 |
165.9 |
179.8 |
C15 |
C16 |
C17 |
H17 |
189.7 |
180.2 |
C15 |
C16 |
C18 |
C19 |
350.6 |
0.0 |
C15 |
C16 |
C18 |
C23 |
169.0 |
179.8 |
H15 |
C15 |
C14 |
H14 |
2.2 |
360.0 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
H15 |
C15 |
C16 |
C17 |
171.2 |
179.8 |
H15 |
C15 |
C16 |
C18 |
5.3 |
0.0 |
N12 |
C17 |
C16 |
H17 |
180.0 |
180.3 |
C17 |
C16 |
C15 |
H15 |
171.2 |
179.8 |
C15 |
C16 |
C17 |
C18 |
192.7 |
180.2 |
C17 |
C16 |
C18 |
C19 |
184.9 |
180.2 |
C17 |
C16 |
C18 |
C23 |
3.2 |
360.0 |
C18 |
C16 |
C15 |
H15 |
5.3 |
0.0 |
C15 |
C16 |
C18 |
C17 |
165.8 |
179.8 |
C18 |
C16 |
C17 |
H17 |
357.0 |
0.0 |
C19 |
C18 |
C16 |
C23 |
181.7 |
180.3 |
C16 |
C18 |
C19 |
C20 |
181.4 |
180.0 |
C16 |
C18 |
C19 |
H19 |
1.4 |
359.9 |
C16 |
C18 |
C23 |
C22 |
179.7 |
179.7 |
C16 |
C18 |
C23 |
H23 |
359.7 |
359.9 |
N12 |
C17 |
H17 |
C16 |
180.0 |
179.7 |
H17 |
C17 |
C16 |
C18 |
357.0 |
0.0 |
C16 |
C18 |
C19 |
C23 |
178.3 |
179.7 |
C19 |
C18 |
C23 |
C22 |
358.1 |
359.5 |
C19 |
C18 |
C23 |
H23 |
178.1 |
179.7 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.1 |
C18 |
C19 |
C20 |
C21 |
357.6 |
360.0 |
C18 |
C19 |
C20 |
H20 |
177.6 |
180.0 |
C16 |
C18 |
C23 |
C19 |
181.6 |
180.3 |
C23 |
C18 |
C19 |
C20 |
3.1 |
0.3 |
C23 |
C18 |
C19 |
H19 |
183.1 |
180.2 |
C21 |
C22 |
C23 |
C18 |
359.9 |
0.5 |
C18 |
C23 |
C22 |
H22 |
179.9 |
180.3 |
C22 |
C23 |
C18 |
H23 |
180.0 |
179.8 |
C20 |
C19 |
C18 |
C23 |
3.1 |
0.3 |
C18 |
C19 |
C20 |
H19 |
180.0 |
179.9 |
C21 |
C20 |
C19 |
H20 |
180.0 |
180.0 |
C19 |
C20 |
C21 |
C22 |
0.3 |
360.0 |
C19 |
C20 |
C21 |
H21 |
180.3 |
180.0 |
H19 |
C19 |
C18 |
C23 |
183.1 |
180.2 |
C18 |
C19 |
H19 |
C20 |
180.0 |
180.1 |
H19 |
C19 |
C20 |
C21 |
177.6 |
180.1 |
H19 |
C19 |
C20 |
H20 |
357.6 |
0.1 |
C21 |
C20 |
C19 |
H19 |
177.6 |
180.1 |
C19 |
C20 |
C21 |
H20 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
C20 |
C21 |
C22 |
C23 |
0.9 |
359.8 |
C20 |
C21 |
C22 |
H22 |
180.9 |
180.0 |
H20 |
C20 |
C19 |
H19 |
357.6 |
0.1 |
C19 |
C20 |
H20 |
C21 |
180.0 |
180.0 |
H20 |
C20 |
C21 |
C22 |
180.3 |
179.9 |
H20 |
C20 |
C21 |
H21 |
0.3 |
360.0 |
C18 |
C23 |
C22 |
C21 |
359.9 |
0.5 |
C22 |
C21 |
C20 |
H20 |
180.3 |
179.9 |
C20 |
C21 |
C22 |
H21 |
180.0 |
180.0 |
C23 |
C22 |
C21 |
H22 |
180.0 |
179.8 |
C21 |
C22 |
C23 |
H23 |
179.8 |
180.3 |
H21 |
C21 |
C20 |
H20 |
0.3 |
360.0 |
C20 |
C21 |
H21 |
C22 |
180.0 |
180.0 |
H21 |
C21 |
C22 |
C23 |
180.9 |
179.8 |
H21 |
C21 |
C22 |
H22 |
0.9 |
360.0 |
C18 |
C23 |
C22 |
H23 |
180.0 |
180.2 |
C23 |
C22 |
C21 |
H21 |
180.9 |
179.8 |
C21 |
C22 |
C23 |
H22 |
180.0 |
180.2 |
H22 |
C22 |
C21 |
H21 |
0.9 |
360.0 |
C21 |
C22 |
H22 |
C23 |
180.0 |
179.8 |
H22 |
C22 |
C23 |
H23 |
359.9 |
0.1 |
C18 |
C23 |
H23 |
C22 |
180.0 |
179.8 |
H23 |
C23 |
C22 |
H22 |
359.9 |
0.1 |
H131 |
O10 |
P9 |
O11 |
124.0 |
60.0 |
H131 |
O10 |
P9 |
O12 |
0.0 |
300.0 |
H141 |
O11 |
P9 |
O12 |
360.0 |
179.9 |
H151 |
O15 |
P14 |
O16 |
232.6 |
295.0 |
H151 |
O15 |
P14 |
O17 |
0.0 |
175.0 |
H16 |
O16 |
P14 |
O17 |
0.0 |
60.0 |