Atom Nomenclature for P2H

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P2H

Atom Name (V3) Atom Name (V2)
C7 C7
C8 C8
P9 P9
O10 O10
O11 O11
N12 N12
O12 O12
C13 C13
O13 O13
C14 C14
P14 P14
C15 C15
O15 O15
C16 C16
O16 O16
C17 C17
O17 O17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
H7 H7
H7A H7A
H13 H13
HO13 HO13
H14 H14
H15 H15
H17 H17
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H131 H131
H141 H141
H151 H151
H16 H16