Atom Nomenclature for P26

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P26

Atom Name (V3) Atom Name (V2)
O2 O2
C22 C22
O1 O1
C19 C19
C18 C18
C17 C17
C20 C20
C21 C21
C16 C16
C13 C13
O4 O4
C15 C15
C14 C14
O3 O3
C10 C10
C9 C9
C8 C8
C01 C01
C2 C2
C1 C1
C11 C11
C12 C12
C7 C7
C02 C02
C6 C6
C5 C5
C3 C3
HO1 HO1
H18 H18
H17 H17
H20 H20
H21 H21
H15 H15
H15A H15A
H14 H14
H14A H14A
H9 H9
H2 H2
H2A H2A
H2B H2B
H1 H1
H1A H1A
H1B H1B
H11 H11
H12 H12
H6 H6
H6A H6A
H6B H6B
H5 H5
H5A H5A
H5B H5B
H3 H3
H3A H3A