PDB Chemical Component P25
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P25
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
CM4 |
1.567 |
1.529 |
| C4 |
C5 |
1.538 |
1.530 |
| C4 |
H41 |
1.115 |
1.090 |
| C4 |
H42 |
1.115 |
1.090 |
| CM4 |
HM41 |
1.115 |
1.090 |
| CM4 |
HM42 |
1.115 |
1.090 |
| CM4 |
HM43 |
1.115 |
1.090 |
| C5 |
C6 |
1.535 |
1.530 |
| C5 |
H51 |
1.115 |
1.090 |
| C5 |
H52 |
1.115 |
1.090 |
| C6 |
C7 |
1.481 |
1.530 |
| C6 |
H61 |
1.116 |
1.091 |
| C6 |
H62 |
1.116 |
1.089 |
| C7 |
O7 |
1.429 |
1.429 |
| C7 |
H71 |
1.115 |
1.091 |
| C7 |
H72 |
1.115 |
1.089 |
| O7 |
PA |
1.457 |
1.610 |
| PA |
O1A |
1.403 |
1.481 |
| PA |
O2A |
1.419 |
1.611 |
| PA |
O3A |
1.570 |
1.610 |
| O2A |
H2A |
0.950 |
0.967 |
| O3A |
PB |
1.577 |
1.610 |
| PB |
O1B |
1.416 |
1.479 |
| PB |
O2B |
1.448 |
1.610 |
| PB |
O3B |
1.515 |
1.611 |
| O2B |
H2B |
0.950 |
0.967 |
| O3B |
H3B |
0.950 |
0.967 |
Bond Angles for P25
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CM4 |
C4 |
C5 |
120.7 |
109.5 |
| CM4 |
C4 |
H41 |
108.2 |
109.5 |
| CM4 |
C4 |
H42 |
108.2 |
109.5 |
| C4 |
CM4 |
HM41 |
108.2 |
109.5 |
| C4 |
CM4 |
HM42 |
120.7 |
109.5 |
| C4 |
CM4 |
HM43 |
108.2 |
109.5 |
| C5 |
C4 |
H41 |
108.2 |
109.5 |
| C5 |
C4 |
H42 |
108.2 |
109.4 |
| C4 |
C5 |
C6 |
126.5 |
109.5 |
| C4 |
C5 |
H51 |
106.2 |
109.5 |
| C4 |
C5 |
H52 |
106.2 |
109.5 |
| H41 |
C4 |
H42 |
101.7 |
109.4 |
| HM41 |
CM4 |
HM42 |
108.2 |
109.4 |
| HM41 |
CM4 |
HM43 |
101.7 |
109.5 |
| HM42 |
CM4 |
HM43 |
108.2 |
109.4 |
| C6 |
C5 |
H51 |
106.2 |
109.5 |
| C6 |
C5 |
H52 |
106.2 |
109.5 |
| C5 |
C6 |
C7 |
127.6 |
109.4 |
| C5 |
C6 |
H61 |
105.9 |
109.5 |
| C5 |
C6 |
H62 |
105.9 |
109.5 |
| H51 |
C5 |
H52 |
103.3 |
109.5 |
| C7 |
C6 |
H61 |
105.8 |
109.4 |
| C7 |
C6 |
H62 |
105.8 |
109.5 |
| C6 |
C7 |
O7 |
160.7 |
109.4 |
| C6 |
C7 |
H71 |
95.6 |
109.4 |
| C6 |
C7 |
H72 |
95.6 |
109.5 |
| H61 |
C6 |
H62 |
103.5 |
109.5 |
| O7 |
C7 |
H71 |
95.6 |
109.4 |
| O7 |
C7 |
H72 |
95.6 |
109.5 |
| C7 |
O7 |
PA |
120.8 |
106.8 |
| H71 |
C7 |
H72 |
108.7 |
109.5 |
| O7 |
PA |
O1A |
108.1 |
109.5 |
| O7 |
PA |
O2A |
113.4 |
109.5 |
| O7 |
PA |
O3A |
109.7 |
109.5 |
| O1A |
PA |
O2A |
105.9 |
109.4 |
| O1A |
PA |
O3A |
108.4 |
109.5 |
| O2A |
PA |
O3A |
111.2 |
109.5 |
| PA |
O2A |
H2A |
113.4 |
106.8 |
| PA |
O3A |
PB |
134.9 |
106.8 |
| O3A |
PB |
O1B |
106.6 |
109.5 |
| O3A |
PB |
O2B |
102.7 |
109.4 |
| O3A |
PB |
O3B |
102.0 |
109.5 |
| O1B |
PB |
O2B |
116.2 |
109.5 |
| O1B |
PB |
O3B |
115.7 |
109.5 |
| O2B |
PB |
O3B |
111.5 |
109.5 |
| PB |
O2B |
H2B |
102.7 |
106.8 |
| PB |
O3B |
H3B |
102.0 |
106.8 |
Torsion Angles for P25
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
CM4 |
H41 |
125.3 |
240.0 |
| C5 |
C4 |
CM4 |
H42 |
234.7 |
120.0 |
| CM4 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
| CM4 |
C4 |
C5 |
H51 |
54.8 |
300.0 |
| CM4 |
C4 |
C5 |
H52 |
305.3 |
60.0 |
| H41 |
C4 |
CM4 |
H42 |
109.5 |
240.0 |
| HM41 |
CM4 |
C4 |
HM42 |
234.7 |
240.0 |
| HM41 |
CM4 |
C4 |
HM43 |
109.5 |
120.0 |
| HM42 |
CM4 |
C4 |
HM43 |
234.7 |
240.0 |
| CM4 |
C4 |
C5 |
H41 |
234.7 |
120.0 |
| CM4 |
C4 |
C5 |
H42 |
125.3 |
239.9 |
| C5 |
C4 |
CM4 |
HM41 |
54.7 |
180.0 |
| C5 |
C4 |
CM4 |
HM42 |
180.0 |
300.0 |
| C5 |
C4 |
CM4 |
HM43 |
305.3 |
60.0 |
| H41 |
C4 |
C5 |
H42 |
250.5 |
119.9 |
| C6 |
C5 |
C4 |
H51 |
125.2 |
240.0 |
| C6 |
C5 |
C4 |
H52 |
234.7 |
120.0 |
| C4 |
C5 |
C6 |
C7 |
170.5 |
180.0 |
| C4 |
C5 |
C6 |
H61 |
45.3 |
300.0 |
| C4 |
C5 |
C6 |
H62 |
295.8 |
60.0 |
| H51 |
C5 |
C4 |
H52 |
109.5 |
240.0 |
| CM4 |
C4 |
H41 |
C5 |
132.4 |
240.0 |
| CM4 |
C4 |
H41 |
H42 |
246.2 |
120.1 |
| H41 |
C4 |
CM4 |
HM41 |
289.5 |
300.0 |
| H41 |
C4 |
CM4 |
HM42 |
54.7 |
60.0 |
| H41 |
C4 |
CM4 |
HM43 |
180.0 |
180.0 |
| C5 |
C4 |
H41 |
H42 |
113.8 |
240.1 |
| H41 |
C4 |
C5 |
C6 |
305.3 |
60.0 |
| H41 |
C4 |
C5 |
H51 |
180.0 |
180.0 |
| H41 |
C4 |
C5 |
H52 |
70.6 |
300.0 |
| CM4 |
C4 |
H42 |
C5 |
227.7 |
120.0 |
| CM4 |
C4 |
H42 |
H41 |
113.8 |
240.0 |
| H42 |
C4 |
CM4 |
HM41 |
180.0 |
60.0 |
| H42 |
C4 |
CM4 |
HM42 |
305.3 |
180.0 |
| H42 |
C4 |
CM4 |
HM43 |
70.5 |
300.0 |
| C5 |
C4 |
H42 |
H41 |
246.2 |
119.9 |
| H42 |
C4 |
C5 |
C6 |
54.7 |
300.1 |
| H42 |
C4 |
C5 |
H51 |
289.5 |
60.1 |
| H42 |
C4 |
C5 |
H52 |
180.0 |
180.1 |
| HM41 |
CM4 |
C4 |
C5 |
54.7 |
180.0 |
| HM41 |
CM4 |
C4 |
H41 |
289.5 |
300.0 |
| HM41 |
CM4 |
C4 |
H42 |
180.0 |
60.0 |
| C4 |
CM4 |
HM41 |
HM42 |
132.4 |
120.1 |
| C4 |
CM4 |
HM41 |
HM43 |
246.2 |
240.0 |
| HM42 |
CM4 |
HM41 |
HM43 |
113.8 |
119.9 |
| HM42 |
CM4 |
C4 |
C5 |
180.0 |
300.0 |
| HM42 |
CM4 |
C4 |
H41 |
54.7 |
60.0 |
| HM42 |
CM4 |
C4 |
H42 |
305.3 |
180.0 |
| C4 |
CM4 |
HM42 |
HM41 |
234.7 |
239.9 |
| C4 |
CM4 |
HM42 |
HM43 |
125.3 |
120.0 |
| HM41 |
CM4 |
HM42 |
HM43 |
250.6 |
240.1 |
| HM43 |
CM4 |
C4 |
C5 |
305.3 |
60.0 |
| HM43 |
CM4 |
C4 |
H41 |
180.0 |
180.0 |
| HM43 |
CM4 |
C4 |
H42 |
70.5 |
300.0 |
| C4 |
CM4 |
HM43 |
HM41 |
113.8 |
120.0 |
| C4 |
CM4 |
HM43 |
HM42 |
227.6 |
239.9 |
| HM41 |
CM4 |
HM43 |
HM42 |
113.8 |
119.9 |
| C6 |
C5 |
C4 |
H41 |
305.3 |
60.0 |
| C6 |
C5 |
C4 |
H42 |
54.7 |
300.1 |
| C4 |
C5 |
C6 |
H51 |
234.8 |
120.0 |
| C4 |
C5 |
C6 |
H52 |
125.3 |
240.0 |
| H51 |
C5 |
C6 |
H52 |
250.5 |
120.0 |
| C7 |
C6 |
C5 |
H61 |
125.3 |
240.1 |
| C7 |
C6 |
C5 |
H62 |
234.7 |
120.0 |
| C5 |
C6 |
C7 |
O7 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H71 |
54.7 |
299.9 |
| C5 |
C6 |
C7 |
H72 |
305.3 |
60.0 |
| H61 |
C6 |
C5 |
H62 |
109.5 |
240.0 |
| H51 |
C5 |
C4 |
H41 |
180.0 |
180.0 |
| H51 |
C5 |
C4 |
H42 |
289.5 |
60.1 |
| C4 |
C5 |
H51 |
C6 |
136.9 |
240.0 |
| C4 |
C5 |
H51 |
H52 |
248.4 |
120.0 |
| C6 |
C5 |
H51 |
H52 |
111.6 |
240.0 |
| H51 |
C5 |
C6 |
C7 |
295.8 |
60.0 |
| H51 |
C5 |
C6 |
H61 |
170.5 |
180.0 |
| H51 |
C5 |
C6 |
H62 |
61.1 |
300.0 |
| H52 |
C5 |
C4 |
H41 |
70.6 |
300.0 |
| H52 |
C5 |
C4 |
H42 |
180.0 |
180.1 |
| C4 |
C5 |
H52 |
C6 |
223.1 |
120.0 |
| C4 |
C5 |
H52 |
H51 |
111.5 |
240.0 |
| C6 |
C5 |
H52 |
H51 |
248.4 |
120.0 |
| H52 |
C5 |
C6 |
C7 |
45.3 |
300.0 |
| H52 |
C5 |
C6 |
H61 |
280.0 |
60.0 |
| H52 |
C5 |
C6 |
H62 |
170.5 |
180.0 |
| C7 |
C6 |
C5 |
H51 |
295.8 |
60.0 |
| C7 |
C6 |
C5 |
H52 |
45.3 |
300.0 |
| C5 |
C6 |
C7 |
H61 |
234.7 |
119.9 |
| C5 |
C6 |
C7 |
H62 |
125.3 |
240.0 |
| H61 |
C6 |
C7 |
H62 |
250.5 |
120.0 |
| O7 |
C7 |
C6 |
H71 |
125.3 |
240.1 |
| O7 |
C7 |
C6 |
H72 |
234.7 |
120.0 |
| C6 |
C7 |
O7 |
PA |
109.8 |
180.0 |
| H71 |
C7 |
C6 |
H72 |
109.5 |
240.0 |
| H61 |
C6 |
C5 |
H51 |
170.5 |
180.0 |
| H61 |
C6 |
C5 |
H52 |
280.0 |
60.0 |
| C5 |
C6 |
H61 |
C7 |
137.8 |
240.1 |
| C5 |
C6 |
H61 |
H62 |
248.9 |
120.0 |
| C7 |
C6 |
H61 |
H62 |
111.1 |
239.9 |
| H61 |
C6 |
C7 |
O7 |
305.3 |
60.1 |
| H61 |
C6 |
C7 |
H71 |
180.0 |
180.0 |
| H61 |
C6 |
C7 |
H72 |
70.5 |
300.0 |
| H62 |
C6 |
C5 |
H51 |
61.1 |
300.0 |
| H62 |
C6 |
C5 |
H52 |
170.5 |
180.0 |
| C5 |
C6 |
H62 |
C7 |
222.2 |
120.0 |
| C5 |
C6 |
H62 |
H61 |
111.1 |
240.0 |
| C7 |
C6 |
H62 |
H61 |
248.9 |
120.0 |
| H62 |
C6 |
C7 |
O7 |
54.7 |
300.0 |
| H62 |
C6 |
C7 |
H71 |
289.5 |
60.0 |
| H62 |
C6 |
C7 |
H72 |
180.0 |
180.0 |
| O7 |
C7 |
C6 |
H61 |
305.3 |
60.1 |
| O7 |
C7 |
C6 |
H62 |
54.7 |
300.0 |
| C6 |
C7 |
O7 |
H71 |
234.7 |
119.9 |
| C6 |
C7 |
O7 |
H72 |
125.3 |
239.9 |
| H71 |
C7 |
O7 |
H72 |
250.5 |
120.0 |
| C7 |
O7 |
PA |
O1A |
179.7 |
305.0 |
| C7 |
O7 |
PA |
O2A |
296.7 |
64.9 |
| C7 |
O7 |
PA |
O3A |
61.7 |
184.9 |
| H71 |
C7 |
C6 |
H61 |
180.0 |
180.0 |
| H71 |
C7 |
C6 |
H62 |
289.5 |
60.0 |
| C6 |
C7 |
H71 |
O7 |
164.2 |
240.1 |
| C6 |
C7 |
H71 |
H72 |
262.1 |
120.1 |
| O7 |
C7 |
H71 |
H72 |
97.9 |
240.0 |
| H71 |
C7 |
O7 |
PA |
235.0 |
60.1 |
| H72 |
C7 |
C6 |
H61 |
70.5 |
300.0 |
| H72 |
C7 |
C6 |
H62 |
180.0 |
180.0 |
| C6 |
C7 |
H72 |
O7 |
195.8 |
120.0 |
| C6 |
C7 |
H72 |
H71 |
97.9 |
240.0 |
| O7 |
C7 |
H72 |
H71 |
262.1 |
120.0 |
| H72 |
C7 |
O7 |
PA |
344.5 |
300.0 |
| PA |
O7 |
C7 |
H71 |
235.0 |
60.1 |
| PA |
O7 |
C7 |
H72 |
344.5 |
300.0 |
| O1A |
PA |
O7 |
O2A |
243.0 |
240.1 |
| O1A |
PA |
O7 |
O3A |
118.0 |
120.1 |
| O2A |
PA |
O7 |
O3A |
235.0 |
240.0 |
| O7 |
PA |
O2A |
H2A |
180.0 |
60.1 |
| O7 |
PA |
O3A |
PB |
53.9 |
165.0 |
| O7 |
PA |
O1A |
O2A |
121.8 |
119.9 |
| O7 |
PA |
O1A |
O3A |
241.1 |
239.9 |
| O2A |
PA |
O1A |
O3A |
119.4 |
120.0 |
| O1A |
PA |
O2A |
H2A |
298.3 |
180.0 |
| O1A |
PA |
O3A |
PB |
296.1 |
45.0 |
| O7 |
PA |
O2A |
O1A |
241.7 |
240.1 |
| O7 |
PA |
O2A |
O3A |
124.2 |
120.0 |
| O1A |
PA |
O2A |
O3A |
242.5 |
240.0 |
| O2A |
PA |
O3A |
PB |
180.1 |
285.0 |
| O7 |
PA |
O3A |
O1A |
117.8 |
120.0 |
| O7 |
PA |
O3A |
O2A |
233.8 |
240.0 |
| O1A |
PA |
O3A |
O2A |
116.0 |
120.0 |
| O3A |
PA |
O2A |
H2A |
55.8 |
300.0 |
| PA |
O3A |
PB |
O1B |
268.2 |
45.0 |
| PA |
O3A |
PB |
O2B |
145.5 |
165.0 |
| PA |
O3A |
PB |
O3B |
29.9 |
285.0 |
| H2A |
O2A |
PA |
O3A |
55.8 |
300.0 |
| O1B |
PB |
O3A |
O2B |
122.7 |
240.0 |
| O1B |
PB |
O3A |
O3B |
238.3 |
120.1 |
| O2B |
PB |
O3A |
O3B |
115.6 |
240.0 |
| O3A |
PB |
O2B |
H2B |
180.0 |
180.0 |
| O3A |
PB |
O3B |
H3B |
180.0 |
300.0 |
| O3A |
PB |
O1B |
O2B |
246.3 |
120.0 |
| O3A |
PB |
O1B |
O3B |
112.6 |
239.9 |
| O2B |
PB |
O1B |
O3B |
226.2 |
120.0 |
| O1B |
PB |
O2B |
H2B |
64.1 |
300.0 |
| O1B |
PB |
O3B |
H3B |
295.2 |
180.0 |
| O3A |
PB |
O2B |
O1B |
115.9 |
240.0 |
| O3A |
PB |
O2B |
O3B |
251.5 |
120.0 |
| O1B |
PB |
O2B |
O3B |
135.6 |
240.0 |
| O2B |
PB |
O3B |
H3B |
71.0 |
60.0 |
| O3A |
PB |
O3B |
O1B |
244.8 |
120.1 |
| O3A |
PB |
O3B |
O2B |
109.0 |
240.0 |
| O1B |
PB |
O3B |
O2B |
224.2 |
120.0 |
| O3B |
PB |
O2B |
H2B |
288.5 |
60.0 |
| H2B |
O2B |
PB |
O3B |
288.5 |
60.0 |