Atom Nomenclature for P1Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for P1Z

Atom Name (V3) Atom Name (V2)
C16 C16
C17 C17
C12 C12
C13 C13
C14 C14
C15 C15
C8 C8
C9 C9
C10 C10
C11 C11
C6 C6
C7 C7
C21 C21
C20 C20
C19 C19
C18 C18
N2 N2
C3 C3
C4 C4
C5 C5
N1 N1
O3 O3
O5 O5
H16 H16
H17 H17
H13 H13
H14 H14
H15 H15
H8 H8
H9 H9
H10 H10
H11 H11
H7 H7
H211 1H21
H212 2H21
H213 3H21
H201 1H20
H202 2H20
H191 1H19
H192 2H19
H181 1H18
H182 2H18
H4 H4