PDB Chemical Component P1Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P1Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
C02 |
1.384 |
1.383 |
| C01 |
H01 |
1.080 |
1.080 |
| C02 |
BR19 |
1.899 |
1.890 |
| C03 |
C02 |
1.394 |
1.389 |
| C03 |
O20 |
1.371 |
1.359 |
| C04 |
C03 |
1.398 |
1.386 |
| C04 |
H04 |
1.080 |
1.080 |
| C05 |
C04 |
1.391 |
1.382 |
| C05 |
C06 |
1.405 |
1.383 |
| C05 |
H05 |
1.080 |
1.080 |
| C06 |
C01 |
1.397 |
1.382 |
| C07 |
C06 |
1.503 |
1.507 |
| C07 |
H07 |
1.100 |
1.091 |
| C07 |
H07A |
1.100 |
1.090 |
| C08 |
C07 |
1.502 |
1.506 |
| C08 |
N13 |
1.336 |
1.320 |
| N09 |
C08 |
1.340 |
1.314 |
| C10 |
N09 |
1.359 |
1.334 |
| C10 |
C11 |
1.375 |
1.398 |
| C11 |
C12 |
1.375 |
1.404 |
| C12 |
O15 |
1.348 |
1.356 |
| C12 |
N13 |
1.351 |
1.324 |
| O14 |
C11 |
1.360 |
1.357 |
| C16 |
C10 |
1.477 |
1.480 |
| C16 |
O17 |
1.345 |
1.347 |
| O17 |
HO17 |
0.950 |
0.967 |
| O18 |
C16 |
1.217 |
1.215 |
| C21 |
O20 |
1.426 |
1.429 |
| C21 |
H21 |
1.100 |
1.089 |
| C21 |
H21A |
1.100 |
1.090 |
| C21 |
H21B |
1.100 |
1.090 |
| O14 |
H10 |
0.950 |
0.967 |
| O15 |
H11 |
0.950 |
0.966 |
Bond Angles for P1Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C01 |
H01 |
121.0 |
120.0 |
| C01 |
C02 |
BR19 |
119.3 |
120.1 |
| C06 |
C01 |
H01 |
121.0 |
120.0 |
| C03 |
C02 |
BR19 |
118.3 |
120.1 |
| C04 |
C03 |
O20 |
124.0 |
120.1 |
| C05 |
C04 |
H04 |
120.5 |
120.0 |
| C06 |
C05 |
H05 |
119.6 |
120.0 |
| H07 |
C07 |
H07A |
110.6 |
109.5 |
| C08 |
C07 |
H07 |
108.3 |
109.4 |
| C08 |
C07 |
H07A |
108.3 |
109.5 |
| N09 |
C08 |
N13 |
127.1 |
122.1 |
| C08 |
N13 |
C12 |
114.0 |
121.1 |
| C10 |
C11 |
C12 |
114.7 |
118.0 |
| C11 |
C12 |
O15 |
120.3 |
120.5 |
| C11 |
C12 |
N13 |
125.4 |
119.0 |
| N13 |
C12 |
O15 |
114.4 |
120.5 |
| C12 |
O15 |
H11 |
109.5 |
114.0 |
| C16 |
O17 |
HO17 |
109.5 |
116.9 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H21 |
C21 |
H21B |
109.4 |
109.5 |
| H21A |
C21 |
H21B |
109.5 |
109.5 |
Torsion Angles for P1Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C06 |
C01 |
C02 |
H01 |
180.0 |
180.2 |
| C03 |
C02 |
C01 |
BR19 |
179.3 |
180.1 |
| H01 |
C01 |
C02 |
BR19 |
1.6 |
360.0 |
| BR19 |
C02 |
C01 |
H01 |
1.6 |
360.0 |
| C03 |
C02 |
C01 |
H01 |
180.9 |
180.0 |
| C01 |
C02 |
C03 |
BR19 |
180.7 |
179.9 |
| O20 |
C03 |
C02 |
BR19 |
357.8 |
0.0 |
| C04 |
C03 |
C02 |
BR19 |
179.7 |
180.0 |
| H04 |
C04 |
C03 |
O20 |
0.3 |
360.0 |
| C05 |
C04 |
C03 |
O20 |
180.3 |
180.0 |
| C05 |
C06 |
C01 |
H01 |
179.1 |
179.7 |
| C06 |
C05 |
C04 |
H04 |
181.7 |
179.8 |
| H05 |
C05 |
C04 |
H04 |
1.7 |
0.1 |
| C02 |
C01 |
C06 |
H01 |
180.0 |
179.8 |
| C06 |
C01 |
C02 |
BR19 |
181.6 |
180.2 |
| C07 |
C06 |
C01 |
H01 |
359.0 |
0.2 |
| C07 |
C06 |
C05 |
H05 |
359.7 |
359.7 |
| C08 |
C07 |
H07 |
H07A |
241.4 |
239.9 |
| C08 |
C07 |
H07A |
H07 |
118.6 |
120.0 |
| H07 |
C07 |
C08 |
H07A |
120.0 |
120.1 |
| N13 |
C08 |
C07 |
H07 |
174.4 |
330.1 |
| N13 |
C08 |
C07 |
H07A |
54.4 |
210.0 |
| C11 |
C12 |
N13 |
C08 |
0.2 |
0.6 |
| C08 |
N13 |
C12 |
O15 |
179.5 |
180.3 |
| N09 |
C08 |
C07 |
H07 |
354.5 |
150.3 |
| N09 |
C08 |
C07 |
H07A |
234.5 |
30.3 |
| N09 |
C08 |
N13 |
C12 |
0.1 |
359.4 |
| C10 |
N09 |
C08 |
N13 |
0.2 |
0.3 |
| C10 |
C11 |
C12 |
O15 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
N13 |
359.2 |
359.7 |
| C08 |
N13 |
C12 |
C11 |
0.2 |
0.6 |
| N13 |
C12 |
C11 |
O15 |
179.2 |
179.7 |
| C11 |
C12 |
O15 |
H11 |
179.3 |
89.9 |
| C11 |
C12 |
O15 |
N13 |
179.3 |
179.7 |
| C11 |
C12 |
N13 |
O15 |
180.7 |
180.3 |
| N13 |
C12 |
O15 |
H11 |
0.0 |
270.2 |
| O14 |
C11 |
C12 |
O15 |
2.2 |
0.1 |
| O18 |
C16 |
O17 |
HO17 |
0.0 |
0.0 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.0 |
| H21 |
C21 |
H21A |
H21B |
240.1 |
240.0 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.0 |