PDB Chemical Component P1T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for P1T

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
OP1	P	1.504	1.617
OP1	HOP1	0.950	0.981
P	OP2	1.487	1.500
P	OP4	1.611	1.616
P	OP3	1.464	1.617
OP3	HOP3	0.950	0.981
OP4	C5A	1.366	1.423
C5A	C5	1.524	1.489
C5A	H5A1	1.100	1.099
C5A	H5A2	1.100	1.099
C5	C4	1.407	1.391
C5	C6	1.377	1.385
C6	N1	1.343	1.353
C6	H6	1.080	1.085
N1	C2	1.331	1.352
C2	C3	1.430	1.385
C2	C2A	1.512	1.493
C2A	H2A1	1.100	1.096
C2A	H2A2	1.100	1.096
C2A	H2A3	1.100	1.097
C3	O3A	1.350	1.359
C3	C4	1.378	1.391
O3A	HO3A	0.951	0.972
C4	C4A	1.499	1.495
C4A	N	1.290	1.440
C4A	H4A1	1.100	1.098
C4A	H4A2	1.100	1.098
N	CA	1.375	1.332
N	HN	1.000	1.022
CA	C	1.471	1.488
CA	CB	1.307	1.342
CB	HB1	1.080	1.086
CB	HB2	1.080	1.085
C	OXT	1.290	1.221
C	O	1.235	1.356
O	HO	0.950	0.981

Bond Angles for P1T

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
P	OP1	HOP1	109.5	118.9
OP1	P	OP2	114.9	115.4
OP1	P	OP4	114.5	103.8
OP1	P	OP3	113.8	103.3
OP2	P	OP4	103.7	115.1
OP2	P	OP3	108.0	115.0
OP3	P	OP4	100.4	102.7
P	OP4	C5A	124.3	118.3
P	OP3	HOP3	109.5	118.9
OP4	C5A	C5	117.1	109.5
OP4	C5A	H5A1	107.0	108.5
OP4	C5A	H5A2	105.3	108.6
C5	C5A	H5A1	107.0	111.5
C5	C5A	H5A2	105.3	111.3
C5A	C5	C4	120.8	122.0
C5A	C5	C6	118.8	120.1
H5A1	C5A	H5A2	115.6	107.3
C6	C5	C4	120.2	117.9
C5	C4	C3	116.0	119.7
C5	C4	C4A	124.7	120.3
C5	C6	N1	121.7	124.0
C5	C6	H6	119.1	121.3
N1	C6	H6	119.2	114.7
C6	N1	C2	121.7	116.4
N1	C2	C3	117.7	124.1
N1	C2	C2A	123.0	115.8
C2A	C2	C3	119.3	120.1
C2	C3	O3A	116.5	121.1
C2	C3	C4	122.7	117.9
C2	C2A	H2A1	109.5	110.3
C2	C2A	H2A2	109.5	111.2
C2	C2A	H2A3	109.5	111.2
H2A1	C2A	H2A2	109.5	108.6
H2A1	C2A	H2A3	109.5	108.6
H2A2	C2A	H2A3	109.5	106.9
O3A	C3	C4	120.9	121.0
C3	O3A	HO3A	109.5	110.4
C3	C4	C4A	119.0	120.0
C4	C4A	N	119.5	112.2
C4	C4A	H4A1	106.3	111.0
C4	C4A	H4A2	103.9	111.4
N	C4A	H4A1	106.2	107.6
N	C4A	H4A2	103.9	107.5
C4A	N	CA	125.6	122.8
C4A	N	HN	104.4	119.8
H4A1	C4A	H4A2	117.7	107.0
CA	N	HN	104.4	117.4
N	CA	C	120.6	118.6
N	CA	CB	122.7	124.8
CB	CA	C	116.6	116.6
CA	C	OXT	121.6	125.6
CA	C	O	115.8	110.8
CA	CB	HB1	108.6	120.5
CA	CB	HB2	125.7	122.8
HB1	CB	HB2	125.8	116.6
O	C	OXT	122.3	123.6
C	O	HO	109.5	112.0

Torsion Angles for P1T

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
OP2	P	OP1	OP4	240.0	233.2
OP2	P	OP1	OP3	125.3	126.3
OP3	P	OP1	OP4	114.8	106.9
OP1	P	OP4	C5A	328.0	53.0
OP1	P	OP3	HOP3	338.4	78.5
HOP1	OP1	P	OP2	316.0	48.7
HOP1	OP1	P	OP4	76.0	175.5
HOP1	OP1	P	OP3	190.8	282.4
OP2	P	OP1	HOP1	316.0	48.7
OP1	P	OP2	OP4	125.8	120.8
OP1	P	OP2	OP3	231.7	239.9
OP3	P	OP2	OP4	254.0	240.9
OP2	P	OP4	C5A	94.0	180.0
OP2	P	OP3	HOP3	209.6	312.0
OP4	P	OP1	HOP1	76.0	175.5
OP1	P	OP4	OP2	234.0	233.0
OP1	P	OP4	OP3	122.4	107.3
OP2	P	OP4	OP3	248.4	234.3
OP4	P	OP3	HOP3	101.3	186.2
P	OP4	C5A	C5	167.6	180.0
P	OP4	C5A	H5A1	47.6	58.1
P	OP4	C5A	H5A2	284.1	301.7
OP3	P	OP1	HOP1	190.8	282.4
OP1	P	OP3	OP2	128.9	126.5
OP1	P	OP3	OP4	237.1	252.3
OP2	P	OP3	OP4	108.3	125.8
OP3	P	OP4	C5A	205.6	305.7
HOP3	OP3	P	OP4	101.3	186.2
C5	C5A	OP4	H5A1	120.0	121.8
C5	C5A	OP4	H5A2	243.5	238.3
OP4	C5A	C5	C4	105.3	90.0
OP4	C5A	C5	C6	282.5	270.0
H5A1	C5A	OP4	H5A2	123.5	116.4
OP4	C5A	C5	H5A1	240.0	239.9
OP4	C5A	C5	H5A2	116.5	120.1
H5A1	C5A	C5	H5A2	236.5	240.2
C6	C5	C5A	C4	177.2	179.9
C5A	C5	C4	C3	175.5	180.0
C5A	C5	C4	C4A	2.7	360.0
C5A	C5	C6	N1	183.9	180.0
C5A	C5	C6	H6	4.0	0.1
OP4	C5A	H5A1	C5	126.2	120.6
OP4	C5A	H5A1	H5A2	243.1	242.8
C5	C5A	H5A1	H5A2	116.9	122.2
H5A1	C5A	C5	C4	225.3	210.1
H5A1	C5A	C5	C6	42.5	30.0
OP4	C5A	H5A2	C5	235.7	239.4
OP4	C5A	H5A2	H5A1	117.9	117.2
C5	C5A	H5A2	H5A1	242.2	237.8
H5A2	C5A	C5	C4	348.9	329.9
H5A2	C5A	C5	C6	166.0	149.9
C4	C5	C5A	H5A1	225.3	210.1
C4	C5	C5A	H5A2	348.9	329.9
C5A	C5	C4	C6	177.1	179.9
C4	C5	C6	N1	1.1	359.9
C4	C5	C6	H6	181.2	180.0
C2	C3	C4	C5	1.2	359.9
O3A	C3	C4	C5	181.7	180.0
C3	C4	C5	C4A	172.7	180.0
C5	C4	C4A	N	132.7	90.0
C5	C4	C4A	H4A1	12.7	210.4
C5	C4	C4A	H4A2	247.9	329.5
C6	C5	C5A	H5A1	42.5	30.0
C6	C5	C5A	H5A2	166.0	149.9
C5A	C5	C6	C4	182.8	180.0
C6	C5	C4	C3	358.3	0.0
C6	C5	C4	C4A	185.6	180.0
N1	C6	C5	H6	180.0	179.9
C5	C6	N1	C2	0.0	0.1
N1	C6	C5	C4	1.1	359.9
C5	C6	N1	H6	180.0	180.1
C6	N1	C2	C3	359.5	359.9
C6	N1	C2	C2A	179.2	180.0
H6	C6	C5	C4	181.2	180.0
C5	C6	H6	N1	180.0	179.9
H6	C6	N1	C2	180.0	180.0
C2	N1	C6	H6	180.0	180.0
C2A	C2	N1	C3	179.7	180.0
N1	C2	C3	O3A	179.4	180.0
N1	C2	C3	C4	359.9	0.1
N1	C2	C2A	H2A1	229.0	195.1
N1	C2	C2A	H2A2	349.0	315.6
N1	C2	C2A	H2A3	108.9	74.6
C5	C4	C3	C2	1.2	359.9
N1	C2	C3	C2A	179.8	180.0
C3	C2	C2A	H2A1	48.7	15.2
C3	C2	C2A	H2A2	168.7	135.7
C3	C2	C2A	H2A3	288.7	254.7
O3A	C3	C2	C4	179.5	179.9
C2	C3	O3A	HO3A	90.3	308.7
C2	C3	C4	C4A	174.4	180.0
N1	C2	C2A	C3	180.3	180.0
C2A	C2	C3	O3A	359.7	360.0
C2A	C2	C3	C4	180.1	180.0
H2A1	C2A	C2	H2A2	240.0	239.5
H2A1	C2A	C2	H2A3	120.0	120.5
H2A2	C2A	C2	H2A3	240.0	241.0
H2A1	C2A	C2	C3	48.7	15.2
C2	C2A	H2A1	H2A2	120.0	122.1
C2	C2A	H2A1	H2A3	240.0	237.9
H2A2	C2A	H2A1	H2A3	120.0	115.9
H2A2	C2A	C2	C3	168.7	135.7
C2	C2A	H2A2	H2A1	240.0	238.5
C2	C2A	H2A2	H2A3	120.0	121.6
H2A1	C2A	H2A2	H2A3	240.0	243.1
H2A3	C2A	C2	C3	288.7	254.7
C2	C2A	H2A3	H2A1	120.0	121.5
C2	C2A	H2A3	H2A2	240.0	238.4
H2A1	C2A	H2A3	H2A2	120.0	116.9
C5	C4	C3	O3A	181.7	180.0
C2	C3	O3A	C4	180.5	180.1
O3A	C3	C4	C4A	354.9	0.1
C5	C4	C3	C4A	186.8	180.0
C2	C3	C4	O3A	179.5	179.9
C4	C3	O3A	HO3A	269.8	128.7
C3	C4	C4A	N	320.2	270.0
C3	C4	C4A	H4A1	200.2	30.4
C3	C4	C4A	H4A2	75.3	149.4
HO3A	O3A	C3	C4	269.8	128.7
C5	C4	C4A	C3	172.5	180.0
N	C4A	C4	H4A1	120.0	239.6
N	C4A	C4	H4A2	244.9	120.5
C4	C4A	N	CA	182.4	120.0
C4	C4A	N	HN	62.4	300.0
H4A1	C4A	C4	H4A2	124.9	241.0
C4	C4A	N	H4A1	240.0	122.4
C4	C4A	N	H4A2	115.1	237.3
H4A1	C4A	N	H4A2	235.1	114.9
CA	N	C4A	HN	120.0	179.9
C4A	N	CA	C	184.0	30.1
C4A	N	CA	CB	7.3	210.0
C4	C4A	H4A1	N	128.3	236.9
C4	C4A	H4A1	H4A2	244.1	121.6
N	C4A	H4A1	H4A2	115.8	244.8
H4A1	C4A	N	CA	302.4	357.6
H4A1	C4A	N	HN	182.4	177.7
C4	C4A	H4A2	N	234.2	123.3
C4	C4A	H4A2	H4A1	117.1	238.6
N	C4A	H4A2	H4A1	242.9	115.3
H4A2	C4A	N	CA	67.3	242.7
H4A2	C4A	N	HN	307.2	62.8
CA	N	C4A	H4A1	302.4	357.6
CA	N	C4A	H4A2	67.3	242.7
C4A	N	CA	HN	240.0	180.1
CB	CA	N	C	183.4	179.9
N	CA	C	OXT	187.7	29.9
N	CA	C	O	1.5	210.0
N	CA	CB	HB1	356.8	0.0
N	CA	CB	HB2	176.8	180.1
HN	N	C4A	H4A1	182.4	177.7
HN	N	C4A	H4A2	307.2	62.8
C4A	N	HN	CA	133.4	179.9
HN	N	CA	C	304.0	210.0
HN	N	CA	CB	127.3	30.0
C	CA	N	HN	304.0	210.0
N	CA	C	CB	183.2	179.9
C	CA	CB	HB1	180.0	180.0
C	CA	CB	HB2	0.0	0.0
O	C	CA	OXT	173.8	180.1
CA	C	O	HO	186.3	179.9
CB	CA	N	HN	127.3	30.0
N	CA	CB	C	176.8	180.1
CB	CA	C	OXT	4.5	210.0
CB	CA	C	O	178.3	30.0
HB1	CB	CA	HB2	180.0	180.0
HB1	CB	CA	C	180.0	180.0
CA	CB	HB1	HB2	180.0	180.0
HB2	CB	CA	C	0.0	0.0
CA	CB	HB2	HB1	180.0	180.0
CA	C	OXT	O	173.4	180.1
OXT	C	O	HO	0.0	360.0
CA	C	O	OXT	186.2	179.9
HO	O	C	OXT	0.0	360.0