PDB Chemical Component P1M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P1M
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C13 |
C12 |
1.343 |
1.383 |
C13 |
C14 |
1.363 |
1.384 |
C12 |
C11 |
1.396 |
1.382 |
C14 |
C15 |
1.398 |
1.381 |
C11 |
BR1 |
1.918 |
1.891 |
C11 |
C10 |
1.363 |
1.390 |
C15 |
C10 |
1.384 |
1.390 |
C10 |
N9 |
1.402 |
1.397 |
N9 |
C1 |
1.442 |
1.453 |
C8 |
C1 |
1.525 |
1.519 |
C8 |
C7 |
1.532 |
1.520 |
C1 |
C2 |
1.534 |
1.519 |
C7 |
N8 |
1.514 |
1.464 |
C7 |
C6 |
1.511 |
1.519 |
N8 |
C8A |
1.496 |
1.461 |
N8 |
C3 |
1.529 |
1.465 |
C2 |
C3 |
1.525 |
1.521 |
C6 |
C5 |
1.527 |
1.524 |
C3 |
C4 |
1.533 |
1.518 |
C5 |
C4 |
1.524 |
1.524 |
C1 |
H1 |
1.100 |
1.129 |
C2 |
H2 |
1.100 |
1.100 |
C2 |
H3 |
1.100 |
1.099 |
C3 |
H4 |
1.100 |
1.108 |
C4 |
H5 |
1.100 |
1.096 |
C4 |
H6 |
1.100 |
1.101 |
C6 |
H7 |
1.100 |
1.101 |
C6 |
H8 |
1.100 |
1.095 |
C7 |
H9 |
1.100 |
1.109 |
C13 |
H11 |
1.080 |
1.080 |
C14 |
H12 |
1.080 |
1.080 |
C15 |
H13 |
1.080 |
1.080 |
C12 |
H14 |
1.080 |
1.080 |
C5 |
H15 |
1.100 |
1.115 |
C5 |
H16 |
1.100 |
1.075 |
C8 |
H17 |
1.100 |
1.100 |
C8 |
H18 |
1.100 |
1.099 |
C8A |
H19 |
1.100 |
1.090 |
C8A |
H20 |
1.100 |
1.090 |
C8A |
H21 |
1.100 |
1.090 |
N9 |
H22 |
0.999 |
0.970 |
Bond Angles for P1M
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C14 |
C13 |
C12 |
120.5 |
120.1 |
C12 |
C13 |
H11 |
119.8 |
119.9 |
C13 |
C12 |
H14 |
120.2 |
119.9 |
C13 |
C14 |
C15 |
120.5 |
120.1 |
C14 |
C13 |
H11 |
119.7 |
120.0 |
C13 |
C14 |
H12 |
119.7 |
119.9 |
C12 |
C11 |
BR1 |
123.7 |
120.1 |
C15 |
C14 |
H12 |
119.8 |
120.0 |
C14 |
C15 |
H13 |
120.3 |
120.0 |
C11 |
C10 |
N9 |
116.3 |
120.1 |
C15 |
C10 |
N9 |
125.2 |
120.1 |
C10 |
N9 |
H22 |
106.1 |
119.9 |
N9 |
C1 |
H1 |
110.0 |
104.4 |
C8 |
C1 |
H1 |
108.9 |
104.8 |
C8 |
C7 |
H9 |
108.3 |
107.3 |
C1 |
C2 |
C3 |
114.8 |
114.1 |
C2 |
C1 |
H1 |
108.8 |
104.8 |
C1 |
C2 |
H2 |
108.1 |
109.0 |
C1 |
C2 |
H3 |
108.2 |
109.1 |
C7 |
N8 |
C8A |
112.8 |
113.0 |
N8 |
C7 |
H9 |
108.5 |
106.8 |
C7 |
C6 |
C5 |
112.8 |
113.0 |
C7 |
C6 |
H7 |
108.7 |
108.8 |
C7 |
C6 |
H8 |
108.6 |
110.1 |
N8 |
C8A |
H19 |
109.5 |
109.5 |
N8 |
C8A |
H20 |
109.5 |
109.5 |
N8 |
C8A |
H21 |
109.5 |
109.5 |
N8 |
C3 |
H4 |
108.9 |
106.8 |
C2 |
C3 |
C4 |
115.5 |
113.7 |
C3 |
C2 |
H2 |
108.1 |
108.7 |
C3 |
C2 |
H3 |
108.1 |
108.8 |
C2 |
C3 |
H4 |
108.9 |
107.2 |
C5 |
C6 |
H7 |
108.6 |
108.6 |
C5 |
C6 |
H8 |
108.7 |
109.4 |
C6 |
C5 |
H15 |
108.7 |
106.6 |
C6 |
C5 |
H16 |
108.7 |
112.7 |
C4 |
C3 |
H4 |
108.8 |
107.5 |
C3 |
C4 |
H5 |
108.8 |
110.0 |
C3 |
C4 |
H6 |
108.9 |
108.8 |
C5 |
C4 |
H5 |
108.9 |
109.4 |
C5 |
C4 |
H6 |
108.8 |
108.5 |
H2 |
C2 |
H3 |
109.5 |
106.9 |
H5 |
C4 |
H6 |
109.4 |
106.7 |
H7 |
C6 |
H8 |
109.4 |
106.8 |
H15 |
C5 |
H16 |
109.5 |
104.9 |
H17 |
C8 |
H18 |
109.5 |
106.7 |
H19 |
C8A |
H20 |
109.5 |
109.5 |
H19 |
C8A |
H21 |
109.5 |
109.5 |
H20 |
C8A |
H21 |
109.4 |
109.5 |
Torsion Angles for P1M
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C13 |
C14 |
C15 |
0.4 |
0.3 |
C14 |
C13 |
C12 |
H11 |
180.0 |
179.6 |
C12 |
C13 |
C14 |
H12 |
180.4 |
180.0 |
C13 |
C12 |
C11 |
BR1 |
180.5 |
180.1 |
C12 |
C13 |
C14 |
H11 |
180.0 |
180.4 |
C14 |
C13 |
C12 |
H14 |
179.4 |
180.0 |
C15 |
C14 |
C13 |
H12 |
180.0 |
180.3 |
C13 |
C14 |
C15 |
H13 |
179.9 |
180.0 |
C12 |
C11 |
C10 |
N9 |
179.2 |
180.0 |
C15 |
C14 |
C13 |
C12 |
0.4 |
0.3 |
C15 |
C14 |
C13 |
H11 |
180.4 |
179.9 |
C13 |
C14 |
C15 |
H12 |
180.0 |
179.7 |
C14 |
C15 |
C10 |
N9 |
180.6 |
180.0 |
BR1 |
C11 |
C10 |
N9 |
359.3 |
360.0 |
C15 |
C10 |
C11 |
N9 |
180.6 |
180.3 |
C11 |
C10 |
N9 |
H22 |
288.8 |
0.0 |
C11 |
C10 |
C15 |
N9 |
179.4 |
179.7 |
C15 |
C10 |
N9 |
H22 |
108.2 |
179.8 |
C10 |
N9 |
C1 |
H1 |
330.2 |
44.9 |
C8 |
C1 |
N9 |
H1 |
242.4 |
246.5 |
C2 |
C1 |
N9 |
H1 |
121.3 |
113.5 |
N9 |
C1 |
C2 |
H2 |
289.0 |
217.7 |
N9 |
C1 |
C2 |
H3 |
47.5 |
334.0 |
N9 |
C1 |
C8 |
H1 |
118.4 |
113.2 |
C2 |
C1 |
C8 |
H1 |
240.5 |
245.7 |
C8 |
C1 |
C2 |
H2 |
170.6 |
85.2 |
C8 |
C1 |
C2 |
H3 |
289.1 |
201.6 |
C7 |
C8 |
C1 |
H1 |
69.9 |
150.6 |
C8 |
C7 |
N8 |
C8A |
196.0 |
192.3 |
N8 |
C7 |
C8 |
H9 |
117.4 |
115.7 |
C8 |
C7 |
C6 |
H7 |
54.2 |
48.9 |
C8 |
C7 |
C6 |
H8 |
173.1 |
165.6 |
N9 |
C1 |
C2 |
H1 |
238.0 |
246.8 |
C8 |
C1 |
C2 |
H1 |
119.6 |
114.3 |
C1 |
C2 |
C3 |
C4 |
244.6 |
284.8 |
C3 |
C2 |
C1 |
H2 |
239.3 |
238.3 |
C3 |
C2 |
C1 |
H3 |
120.8 |
121.9 |
C1 |
C2 |
C3 |
H4 |
121.8 |
166.2 |
H2 |
C2 |
C1 |
H3 |
241.5 |
243.6 |
C8 |
C7 |
N8 |
H9 |
242.7 |
244.0 |
N8 |
C7 |
C6 |
C5 |
54.7 |
53.2 |
N8 |
C7 |
C6 |
H7 |
175.2 |
173.9 |
N8 |
C7 |
C6 |
H8 |
294.2 |
290.6 |
C7 |
N8 |
C8A |
H19 |
180.0 |
60.0 |
C7 |
N8 |
C8A |
H20 |
300.0 |
180.0 |
C7 |
N8 |
C8A |
H21 |
60.0 |
300.0 |
C7 |
N8 |
C3 |
H4 |
180.0 |
178.6 |
C5 |
C6 |
C7 |
H7 |
239.5 |
239.4 |
C5 |
C6 |
C7 |
H8 |
120.5 |
122.7 |
C7 |
C6 |
C5 |
H15 |
70.1 |
199.8 |
C7 |
C6 |
C5 |
H16 |
189.1 |
85.2 |
H7 |
C6 |
C7 |
H8 |
241.0 |
243.3 |
C8A |
N8 |
C7 |
H9 |
313.3 |
308.3 |
C8A |
N8 |
C3 |
H4 |
48.9 |
51.5 |
H19 |
C8A |
N8 |
H20 |
240.0 |
240.0 |
H19 |
C8A |
N8 |
H21 |
120.0 |
120.0 |
H20 |
C8A |
N8 |
H21 |
240.0 |
240.0 |
N8 |
C3 |
C2 |
H2 |
243.7 |
288.7 |
N8 |
C3 |
C2 |
H3 |
125.3 |
172.6 |
C2 |
C3 |
N8 |
H4 |
117.4 |
115.9 |
C4 |
C3 |
N8 |
H4 |
242.1 |
242.9 |
N8 |
C3 |
C4 |
H5 |
64.5 |
70.0 |
N8 |
C3 |
C4 |
H6 |
183.7 |
186.6 |
C3 |
C2 |
C1 |
H1 |
290.3 |
209.2 |
C1 |
C2 |
C3 |
H2 |
120.8 |
121.9 |
C1 |
C2 |
C3 |
H3 |
239.2 |
238.0 |
N8 |
C3 |
C2 |
H4 |
242.6 |
244.4 |
C4 |
C3 |
C2 |
H4 |
122.8 |
118.7 |
C2 |
C3 |
C4 |
H5 |
183.7 |
194.8 |
C2 |
C3 |
C4 |
H6 |
302.9 |
311.4 |
H2 |
C2 |
C3 |
H3 |
118.5 |
116.1 |
C7 |
C6 |
C5 |
H7 |
120.5 |
120.7 |
C7 |
C6 |
C5 |
H8 |
239.5 |
237.0 |
C6 |
C5 |
C4 |
H5 |
290.7 |
280.3 |
C6 |
C5 |
C4 |
H6 |
171.5 |
164.2 |
H7 |
C6 |
C5 |
H8 |
119.0 |
116.2 |
H15 |
C5 |
C6 |
H16 |
240.9 |
114.6 |
N8 |
C3 |
C4 |
H4 |
117.9 |
116.7 |
C4 |
C3 |
C2 |
H2 |
123.9 |
162.9 |
C4 |
C3 |
C2 |
H3 |
5.4 |
46.9 |
C2 |
C3 |
C4 |
H4 |
237.2 |
241.5 |
C5 |
C4 |
C3 |
H5 |
239.6 |
237.3 |
C5 |
C4 |
C3 |
H6 |
120.4 |
120.7 |
H5 |
C4 |
C3 |
H6 |
240.8 |
243.4 |
C5 |
C4 |
C3 |
H4 |
186.1 |
190.7 |
C3 |
C4 |
C5 |
H5 |
120.4 |
123.0 |
C3 |
C4 |
C5 |
H6 |
239.6 |
239.1 |
H5 |
C4 |
C5 |
H6 |
119.2 |
116.1 |
H1 |
C1 |
C2 |
C3 |
290.3 |
209.2 |
H1 |
C1 |
C2 |
H2 |
51.0 |
330.9 |
H1 |
C1 |
C2 |
H3 |
169.5 |
87.3 |
C1 |
C2 |
H2 |
C3 |
235.2 |
235.1 |
H2 |
C2 |
C1 |
H1 |
51.0 |
330.9 |
C1 |
C2 |
H2 |
H3 |
117.6 |
117.8 |
H2 |
C2 |
C3 |
C4 |
123.9 |
162.9 |
C3 |
C2 |
H2 |
H3 |
242.4 |
242.7 |
H2 |
C2 |
C3 |
H4 |
1.1 |
44.3 |
C1 |
C2 |
H3 |
C3 |
124.8 |
125.0 |
H3 |
C2 |
C1 |
H1 |
169.5 |
87.3 |
C1 |
C2 |
H3 |
H2 |
242.4 |
242.3 |
H3 |
C2 |
C3 |
C4 |
5.4 |
46.9 |
C3 |
C2 |
H3 |
H2 |
117.6 |
117.3 |
H3 |
C2 |
C3 |
H4 |
242.6 |
288.2 |
C2 |
C3 |
H4 |
C4 |
126.7 |
122.6 |
H4 |
C3 |
C2 |
H2 |
1.1 |
44.3 |
H4 |
C3 |
C2 |
H3 |
242.6 |
288.2 |
H4 |
C3 |
C4 |
H5 |
306.5 |
313.3 |
H4 |
C3 |
C4 |
H6 |
65.8 |
70.0 |
H5 |
C4 |
C3 |
H4 |
306.5 |
313.3 |
C3 |
C4 |
H5 |
H6 |
118.9 |
117.9 |
C5 |
C4 |
H5 |
H6 |
241.2 |
242.8 |
H6 |
C4 |
C3 |
H4 |
65.8 |
70.0 |
C3 |
C4 |
H6 |
H5 |
241.2 |
241.3 |
C5 |
C4 |
H6 |
H5 |
118.8 |
117.8 |
C7 |
C6 |
H7 |
C5 |
237.0 |
236.7 |
C7 |
C6 |
H7 |
H8 |
118.5 |
118.8 |
C5 |
C6 |
H7 |
H8 |
241.5 |
242.1 |
H7 |
C6 |
C5 |
H15 |
309.6 |
79.1 |
H7 |
C6 |
C5 |
H16 |
68.6 |
324.4 |
C7 |
C6 |
H8 |
C5 |
123.0 |
124.7 |
C7 |
C6 |
H8 |
H7 |
241.5 |
242.1 |
C5 |
C6 |
H8 |
H7 |
118.5 |
117.3 |
H8 |
C6 |
C5 |
H15 |
190.6 |
322.8 |
H8 |
C6 |
C5 |
H16 |
309.6 |
208.2 |
H9 |
C7 |
N8 |
C8A |
313.3 |
308.3 |
H9 |
C7 |
C6 |
C5 |
172.7 |
169.8 |
H9 |
C7 |
C6 |
H7 |
293.2 |
290.4 |
H9 |
C7 |
C6 |
H8 |
52.2 |
47.2 |
C14 |
C13 |
H11 |
C12 |
180.0 |
180.4 |
H11 |
C13 |
C12 |
H14 |
359.4 |
0.4 |
H11 |
C13 |
C14 |
C15 |
180.4 |
179.9 |
H11 |
C13 |
C14 |
H12 |
0.4 |
359.7 |
H12 |
C14 |
C13 |
C12 |
180.4 |
180.0 |
C13 |
C14 |
H12 |
C15 |
180.0 |
180.3 |
H12 |
C14 |
C13 |
H11 |
0.4 |
359.7 |
H12 |
C14 |
C15 |
H13 |
359.9 |
0.3 |
H13 |
C15 |
C14 |
H12 |
359.9 |
0.3 |
H13 |
C15 |
C10 |
N9 |
0.6 |
359.9 |
H14 |
C12 |
C13 |
H11 |
359.4 |
0.4 |
H14 |
C12 |
C11 |
BR1 |
0.5 |
359.8 |
H15 |
C5 |
C6 |
H7 |
309.6 |
79.1 |
H15 |
C5 |
C6 |
H8 |
190.6 |
322.8 |
C6 |
C5 |
H15 |
H16 |
118.6 |
240.2 |
H15 |
C5 |
C4 |
H5 |
170.2 |
36.9 |
H15 |
C5 |
C4 |
H6 |
51.0 |
280.8 |
H16 |
C5 |
C6 |
H7 |
68.6 |
324.4 |
H16 |
C5 |
C6 |
H8 |
309.6 |
208.2 |
C6 |
C5 |
H16 |
H15 |
241.4 |
115.6 |
H16 |
C5 |
C4 |
H5 |
51.1 |
151.5 |
H16 |
C5 |
C4 |
H6 |
291.9 |
35.5 |
H17 |
C8 |
C1 |
H1 |
190.4 |
272.4 |
H17 |
C8 |
C7 |
H9 |
117.6 |
72.2 |
H18 |
C8 |
C1 |
H1 |
309.3 |
28.6 |
H18 |
C8 |
C7 |
H9 |
358.8 |
316.3 |
N8 |
C8A |
H19 |
H20 |
120.0 |
120.0 |
N8 |
C8A |
H19 |
H21 |
240.0 |
240.0 |
H20 |
C8A |
H19 |
H21 |
120.0 |
120.0 |
N8 |
C8A |
H20 |
H19 |
240.0 |
240.0 |
N8 |
C8A |
H20 |
H21 |
120.0 |
120.0 |
H19 |
C8A |
H20 |
H21 |
240.0 |
240.0 |
N8 |
C8A |
H21 |
H19 |
120.0 |
120.0 |
N8 |
C8A |
H21 |
H20 |
240.0 |
240.0 |
H19 |
C8A |
H21 |
H20 |
120.0 |
120.0 |
H22 |
N9 |
C1 |
H1 |
208.4 |
224.9 |