PDB Chemical Component P1B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for P1B

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O4 C4 1.215 1.212
C4 N3 1.327 1.323
C4 C5 1.497 1.513
N3 C2 1.330 1.335
C5 S1 1.774 1.826
C5 C6 1.532 1.530
S1 C2 1.666 1.773
C2 O2 1.216 1.216
C6 C7 1.509 1.507
C21 C20 1.399 1.386
C21 C22 1.382 1.387
C7 C12 1.392 1.383
C7 C8 1.393 1.383
C12 C11 1.385 1.382
C11 C10 1.388 1.387
C10 C9 1.398 1.388
C10 O13 1.340 1.358
C9 C8 1.388 1.381
O13 C14 1.433 1.429
C14 C15 1.511 1.530
C15 C17 1.504 1.507
C24 C23 1.530 1.530
C23 C20 1.509 1.506
C20 C19 1.366 1.382
C19 N18 1.343 1.319
N18 C17 1.337 1.318
C22 C17 1.378 1.383
N3 H3 1.000 0.970
C5 H5 1.100 1.090
C6 H61C 1.100 1.090
C6 H62C 1.100 1.090
C21 H21 1.080 1.080
C22 H22 1.080 1.080
C12 H12 1.080 1.080
C8 H8 1.080 1.080
C11 H11 1.080 1.080
C9 H9 1.080 1.080
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C15 H151 1.100 1.091
C15 H152 1.101 1.090
C24 H241 1.100 1.090
C24 H242 1.100 1.091
C24 H243 1.100 1.089
C23 H231 1.100 1.090
C23 H232 1.101 1.090
C19 H19 1.080 1.080

Bond Angles for P1B

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O4 C4 N3 126.2 123.1
O4 C4 C5 123.4 123.1
N3 C4 C5 110.4 113.8
C4 N3 C2 111.6 121.3
C4 N3 H3 124.2 119.3
C4 C5 S1 101.9 103.0
C4 C5 C6 112.8 110.7
C4 C5 H5 115.5 110.7
N3 C2 S1 115.3 107.7
N3 C2 O2 124.1 126.2
C2 N3 H3 124.2 119.4
S1 C5 C6 117.5 110.7
C5 S1 C2 88.3 94.3
S1 C5 H5 110.6 110.7
C5 C6 C7 112.8 109.5
C6 C5 H5 99.2 110.8
C5 C6 H61C 108.4 109.5
C5 C6 H62C 107.6 109.5
S1 C2 O2 120.6 126.1
C6 C7 C12 118.4 119.9
C6 C7 C8 121.1 120.0
C7 C6 H61C 108.4 109.5
C7 C6 H62C 107.6 109.5
C20 C21 C22 120.5 118.5
C21 C20 C23 120.8 120.4
C21 C20 C19 116.7 119.2
C20 C21 H21 119.7 120.8
C21 C22 C17 120.2 119.1
C22 C21 H21 119.7 120.7
C21 C22 H22 119.9 120.4
C12 C7 C8 120.4 120.1
C7 C12 C11 120.5 120.1
C7 C12 H12 119.7 119.9
C7 C8 C9 119.0 120.1
C7 C8 H8 120.5 119.9
C12 C11 C10 119.3 119.9
C11 C12 H12 119.7 120.0
C12 C11 H11 120.3 120.0
C11 C10 C9 120.2 119.9
C11 C10 O13 118.1 120.1
C10 C11 H11 120.3 120.0
C9 C10 O13 121.6 120.1
C10 C9 C8 120.5 120.0
C10 C9 H9 119.7 119.9
C10 O13 C14 124.3 117.0
C9 C8 H8 120.5 120.0
C8 C9 H9 119.8 120.1
O13 C14 C15 105.6 109.5
O13 C14 H141 110.8 109.5
O13 C14 H142 111.6 109.5
C14 C15 C17 112.3 109.4
C15 C14 H141 110.8 109.5
C15 C14 H142 111.6 109.5
C14 C15 H151 108.5 109.5
C14 C15 H152 107.9 109.5
C15 C17 N18 117.4 119.6
C15 C17 C22 124.7 119.6
C17 C15 H151 108.5 109.5
C17 C15 H152 107.9 109.5
C24 C23 C20 107.5 109.5
C23 C24 H241 109.5 109.5
C23 C24 H242 109.4 109.4
C23 C24 H243 109.4 109.5
C24 C23 H231 110.2 109.5
C24 C23 H232 110.6 109.5
C23 C20 C19 122.5 120.4
C20 C23 H231 110.1 109.5
C20 C23 H232 110.6 109.5
C20 C19 N18 121.5 120.8
C20 C19 H19 119.2 119.6
C19 N18 C17 123.0 121.8
N18 C19 H19 119.2 119.6
N18 C17 C22 117.9 120.8
C17 C22 H22 119.9 120.5
H61C C6 H62C 112.1 109.5
H141 C14 H142 106.5 109.5
H151 C15 H152 111.7 109.5
H241 C24 H242 109.5 109.5
H241 C24 H243 109.4 109.5
H242 C24 H243 109.6 109.5
H231 C23 H232 108.0 109.5

Torsion Angles for P1B

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C4 O4 C5 179.1 180.4
O4 C4 N3 C2 202.8 179.9
O4 C4 N3 H3 22.8 359.9
O4 C4 C5 S1 144.0 180.1
O4 C4 C5 C6 17.1 61.7
O4 C4 C5 H5 263.9 298.4
O4 C4 N3 C5 180.8 179.7
N3 C4 C5 S1 324.8 359.7
N3 C4 C5 C6 197.9 241.4
N3 C4 C5 H5 84.7 118.1
C4 N3 C2 S1 3.5 359.9
C4 N3 C2 O2 183.7 180.0
C2 N3 C4 H3 180.0 180.1
O4 C4 C5 N3 179.2 180.3
C5 C4 N3 C2 21.9 0.3
C5 C4 N3 H3 201.9 180.2
S1 C5 C4 C6 126.9 118.4
C4 C5 S1 C2 30.1 0.2
S1 C5 C4 H5 240.0 241.7
C4 C5 C6 C7 146.3 185.0
C6 C5 C4 H5 113.1 123.3
C4 C5 C6 H61C 266.3 305.0
C4 C5 C6 H62C 27.8 65.0
C2 N3 C4 C5 21.9 0.3
C4 N3 C2 H3 180.0 179.9
C5 S1 C2 N3 338.2 360.0
S1 C2 N3 O2 179.8 179.9
C4 C5 S1 C6 236.2 241.6
C4 C5 S1 H5 123.4 118.4
N3 C2 S1 C5 338.2 360.0
S1 C5 C6 C7 28.2 71.4
C6 C5 S1 H5 247.1 236.7
S1 C5 C6 H61C 148.2 191.4
S1 C5 C6 H62C 269.7 311.4
C5 S1 C2 O2 158.1 179.8
C4 C5 C6 S1 118.1 113.6
C4 C5 C6 H5 237.2 236.7
C6 C5 S1 C2 153.9 118.5
S1 C5 C6 H5 119.1 123.2
C5 C6 C7 C12 223.6 90.0
C5 C6 C7 C8 43.9 269.7
C7 C6 C5 H61C 240.0 240.0
C7 C6 C5 H62C 118.6 120.0
H61C C6 C5 H62C 238.6 240.0
N3 C2 S1 O2 180.2 180.1
S1 C2 N3 H3 183.5 179.9
C2 S1 C5 C6 153.9 118.5
C2 S1 C5 H5 266.8 241.8
N3 C2 O2 S1 179.8 179.8
O2 C2 N3 H3 3.7 0.1
C7 C6 C5 H5 269.1 308.2
C5 C6 C7 H61C 120.0 120.0
C5 C6 C7 H62C 241.5 240.0
C12 C7 C6 C8 179.7 180.3
C6 C7 C12 C11 179.7 180.0
C6 C7 C12 H12 359.7 0.0
C6 C7 C8 C9 180.5 179.7
C6 C7 C8 H8 0.5 360.0
H61C C6 C7 H62C 121.5 120.0
C20 C21 C22 C17 2.6 360.0
C22 C21 C20 H21 180.0 180.3
C20 C21 C22 H22 182.7 180.0
C24 C23 C20 C21 156.3 90.0
C23 C20 C21 C19 178.7 180.0
C21 C20 C23 H231 36.3 330.0
C21 C20 C23 H232 277.1 210.0
C21 C20 C19 N18 0.5 0.0
C21 C20 C19 H19 180.5 180.0
C22 C21 C20 C23 176.4 180.0
C22 C21 C20 C19 357.7 360.0
C20 C21 C22 H21 180.0 179.7
C15 C17 C22 C21 181.3 180.0
N18 C17 C22 C21 359.0 0.0
C17 C22 C21 H22 180.0 180.0
C6 C7 C12 C8 180.3 179.7
C12 C7 C6 H61C 103.6 330.0
C12 C7 C6 H62C 342.2 210.0
C12 C7 C8 C9 0.8 359.4
C12 C7 C8 H8 180.8 179.7
C7 C12 C11 C10 359.9 360.0
C11 C12 C7 H12 180.0 180.0
C7 C12 C11 H11 179.9 180.0
C6 C7 C8 C12 179.7 180.3
C8 C7 C6 H61C 283.9 149.7
C8 C7 C6 H62C 162.5 29.7
C8 C7 C12 C11 359.5 0.3
C8 C7 C12 H12 179.4 180.3
C10 C9 C8 C7 359.6 0.6
C9 C8 C7 H8 180.0 179.7
C7 C8 C9 H9 179.6 180.3
C11 C12 C7 C8 359.5 0.3
C7 C12 C11 H12 180.0 180.0
C12 C11 C10 C9 0.5 0.1
C12 C11 C10 O13 178.3 180.0
C10 C11 C12 H11 180.0 180.0
C10 C11 C12 H12 179.9 180.0
C12 C11 C10 H11 180.0 180.0
C9 C10 C11 O13 182.2 180.1
C11 C10 C9 C8 359.8 359.6
C11 C10 C9 H9 179.8 180.0
C11 C10 O13 C14 54.5 180.0
C7 C8 C9 C10 359.6 0.6
C11 C10 C9 O13 177.8 179.9
C9 C10 C11 H11 180.5 180.1
C9 C10 O13 C14 232.3 359.9
C10 C9 C8 H8 179.6 180.3
C8 C9 C10 H9 180.0 179.7
C11 C10 O13 C9 182.2 180.1
O13 C10 C11 H11 358.3 359.9
O13 C10 C9 C8 182.0 179.7
O13 C10 C9 H9 2.0 0.1
C10 O13 C14 C15 132.7 180.0
C10 O13 C14 H141 252.7 300.0
C10 O13 C14 H142 11.2 60.0
C7 C8 C9 H8 180.0 180.3
C8 C9 C10 O13 182.0 179.7
C10 C9 C8 H9 180.0 180.3
O13 C14 C15 C17 206.1 180.0
C15 C14 O13 H141 240.0 240.0
C15 C14 O13 H142 121.5 120.0
O13 C14 C15 H151 326.1 300.0
O13 C14 C15 H152 87.3 60.0
H141 C14 O13 H142 241.5 240.0
O13 C14 C15 H141 120.0 120.0
O13 C14 C15 H142 238.5 240.0
C14 C15 C17 N18 338.2 305.0
C14 C15 C17 C22 155.9 125.0
C17 C15 C14 H151 240.0 240.0
C17 C15 C14 H152 118.8 120.0
H141 C14 C15 H142 118.5 120.0
H151 C15 C14 H152 238.8 240.0
C21 C22 C17 C15 181.3 180.0
C17 C15 C14 H141 86.1 60.0
C17 C15 C14 H142 327.6 300.0
C14 C15 C17 H151 120.0 120.0
C14 C15 C17 H152 241.2 240.0
C19 N18 C17 C15 177.0 180.0
N18 C17 C15 C22 182.3 180.0
C15 C17 C22 H22 1.3 360.0
H151 C15 C17 H152 121.2 120.0
C21 C20 C23 C24 156.3 90.0
C24 C23 C20 C19 335.0 270.0
C20 C23 C24 H231 240.0 240.0
C20 C23 C24 H232 120.8 120.0
H241 C24 C23 H242 240.0 240.0
H241 C24 C23 H243 119.9 120.0
H242 C24 C23 H243 239.9 240.0
H231 C23 C24 H232 240.8 240.0
C23 C20 C21 C22 176.4 180.0
C21 C20 C23 C19 181.3 180.0
C23 C20 C21 H21 356.4 359.8
C20 C23 C24 H241 73.2 180.0
C20 C23 C24 H242 193.2 300.0
C20 C23 C24 H243 313.3 60.0
C24 C23 C20 H231 120.0 120.0
C24 C23 C20 H232 239.2 240.0
C23 C20 C19 N18 181.8 180.0
C23 C20 C19 H19 1.8 360.0
H231 C23 C20 H232 119.2 120.0
C19 C20 C21 C22 357.7 360.0
C21 C20 C19 C23 178.7 180.0
C19 C20 C21 H21 177.7 179.7
C19 C20 C23 H231 215.0 150.1
C19 C20 C23 H232 95.8 30.0
C20 C19 N18 C17 1.1 360.0
N18 C19 C20 H19 180.0 180.0
C15 C17 N18 C19 177.0 180.0
C20 C19 N18 H19 180.0 180.0
C19 N18 C17 C22 359.2 360.0
C21 C22 C17 N18 359.0 0.0
C15 C17 N18 C22 177.8 180.0
N18 C17 C15 H151 218.2 185.0
N18 C17 C15 H152 97.0 65.0
C17 N18 C19 H19 181.1 180.0
N18 C17 C22 H22 179.0 180.0
C17 C22 C21 H21 182.6 180.2
C21 C22 C17 H22 180.0 180.0
C15 C17 C22 N18 182.3 180.0
C22 C17 C15 H151 35.9 5.0
C22 C17 C15 H152 274.7 245.0
H3 N3 C4 C5 201.9 180.2
C4 N3 H3 C2 180.0 180.1
H3 N3 C2 S1 183.5 179.9
H3 N3 C2 O2 3.7 0.1
C4 C5 H5 S1 244.9 246.4
C4 C5 H5 C6 120.8 123.2
S1 C5 H5 C6 235.9 236.8
H5 C5 S1 C2 266.8 241.8
H5 C5 C6 C7 269.1 308.2
H5 C5 C6 H61C 29.1 68.2
H5 C5 C6 H62C 150.6 188.2
C5 C6 H61C C7 237.3 240.0
H61C C6 C5 H5 29.1 68.2
C5 C6 H61C H62C 118.6 120.0
H61C C6 C7 C12 103.6 330.0
H61C C6 C7 C8 283.9 149.7
C7 C6 H61C H62C 241.3 240.0
C5 C6 H62C C7 121.8 120.0
H62C C6 C5 H5 150.6 188.2
C5 C6 H62C H61C 240.9 240.0
H62C C6 C7 C12 342.2 210.0
H62C C6 C7 C8 162.5 29.7
C7 C6 H62C H61C 119.1 120.0
C20 C21 H21 C22 180.0 180.3
H21 C21 C20 C23 356.4 359.8
H21 C21 C20 C19 177.7 179.7
H21 C21 C22 C17 182.6 180.2
H21 C21 C22 H22 2.7 0.2
C21 C22 H22 C17 180.0 180.0
H22 C22 C21 H21 2.7 0.2
H12 C12 C7 C8 179.4 180.3
C7 C12 H12 C11 180.0 180.0
H12 C12 C11 C10 179.9 180.0
H12 C12 C11 H11 359.9 360.0
C7 C8 H8 C9 180.0 179.7
H8 C8 C9 H9 359.6 360.0
C12 C11 H11 C10 180.0 180.0
H11 C11 C12 H12 359.9 360.0
H11 C11 C10 C9 180.5 180.1
H11 C11 C10 O13 358.3 359.9
H9 C9 C10 O13 2.0 0.1
C10 C9 H9 C8 180.0 179.7
H9 C9 C8 H8 359.6 360.0
O13 C14 H141 C15 243.2 240.0
O13 C14 H141 H142 121.6 120.0
H141 C14 C15 C17 86.1 60.0
C15 C14 H141 H142 238.4 240.0
H141 C14 C15 H151 206.1 180.0
H141 C14 C15 H152 327.3 300.0
O13 C14 H142 C15 117.9 120.0
O13 C14 H142 H141 239.0 240.0
H142 C14 C15 C17 327.6 300.0
C15 C14 H142 H141 121.0 120.0
H142 C14 C15 H151 87.6 60.0
H142 C14 C15 H152 208.8 180.0
C14 C15 H151 C17 237.7 240.0
H151 C15 C14 H141 206.1 180.0
H151 C15 C14 H142 87.6 60.0
C14 C15 H151 H152 118.9 120.0
H151 C15 C17 N18 218.2 185.0
H151 C15 C17 C22 35.9 5.0
C17 C15 H151 H152 241.1 240.0
C14 C15 H152 C17 121.6 120.0
H152 C15 C14 H141 327.3 300.0
H152 C15 C14 H142 208.8 180.0
C14 C15 H152 H151 240.8 240.0
H152 C15 C17 N18 97.0 65.0
H152 C15 C17 C22 274.7 245.0
C17 C15 H152 H151 119.2 120.0
H241 C24 C23 C20 73.2 180.0
C23 C24 H241 H242 120.0 119.9
C23 C24 H241 H243 240.1 240.0
H241 C24 C23 H231 193.2 300.0
H241 C24 C23 H232 312.4 60.0
H242 C24 H241 H243 120.1 120.1
H242 C24 C23 C20 193.2 300.0
C23 C24 H242 H241 240.0 240.1
C23 C24 H242 H243 120.0 120.0
H242 C24 C23 H231 313.2 59.9
H242 C24 C23 H232 72.4 180.0
H241 C24 H242 H243 240.0 239.9
H243 C24 C23 C20 313.3 60.0
C23 C24 H243 H241 120.0 120.0
C23 C24 H243 H242 240.0 240.0
H243 C24 C23 H231 73.2 180.0
H243 C24 C23 H232 192.5 300.0
H241 C24 H243 H242 120.0 120.0
C24 C23 H231 C20 241.6 240.0
H231 C23 C24 H241 193.2 300.0
H231 C23 C24 H242 313.2 59.9
H231 C23 C24 H243 73.2 180.0
C24 C23 H231 H232 120.8 120.0
H231 C23 C20 C19 215.0 150.1
C20 C23 H231 H232 239.2 240.0
C24 C23 H232 C20 118.9 120.0
H232 C23 C24 H241 312.4 60.0
H232 C23 C24 H242 72.4 180.0
H232 C23 C24 H243 192.5 300.0
C24 C23 H232 H231 239.4 240.0
H232 C23 C20 C19 95.8 30.0
C20 C23 H232 H231 120.5 120.0
C20 C19 H19 N18 180.0 180.0
H19 C19 N18 C17 181.1 180.0