PDB Chemical Component P15

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for P15

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C13 O6 1.429 1.430
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C13 H133 1.100 1.089
O6 C12 1.430 1.429
C12 C11 1.525 1.529
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C11 O5 1.428 1.429
C11 H111 1.100 1.090
C11 H112 1.100 1.090
O5 C10 1.428 1.428
C10 C9 1.525 1.530
C10 H101 1.100 1.090
C10 H102 1.100 1.090
C9 O4 1.430 1.429
C9 H91 1.100 1.090
C9 H92 1.099 1.090
O4 C8 1.422 1.429
C8 C7 1.520 1.530
C8 H81 1.100 1.090
C8 H82 1.100 1.090
C7 O3 1.428 1.428
C7 H71 1.100 1.090
C7 H72 1.100 1.091
O3 C6 1.426 1.429
C6 C5 1.519 1.530
C6 H61 1.100 1.090
C6 H62 1.100 1.091
C5 O2 1.425 1.429
C5 H51 1.100 1.091
C5 H52 1.099 1.090
O2 C4 1.425 1.429
C4 C3 1.523 1.531
C4 H41 1.100 1.090
C4 H42 1.100 1.091
C3 O1 1.430 1.429
C3 H31 1.100 1.090
C3 H32 1.100 1.090
O1 C2 1.430 1.429
C2 C1 1.527 1.529
C2 H21 1.100 1.090
C2 H22 1.100 1.090
C1 OXT 1.434 1.429
C1 H11 1.100 1.090
C1 H12 1.100 1.090
OXT HOXT 0.950 0.968

Bond Angles for P15

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O6 C13 H131 109.4 109.4
O6 C13 H132 109.5 109.4
O6 C13 H133 109.5 109.5
C13 O6 C12 112.9 106.8
H131 C13 H132 109.5 109.5
H131 C13 H133 109.5 109.5
H132 C13 H133 109.5 109.5
O6 C12 C11 110.0 109.5
O6 C12 H121 109.2 109.5
O6 C12 H122 109.3 109.5
C11 C12 H121 109.2 109.5
C11 C12 H122 109.3 109.5
C12 C11 O5 109.6 109.5
C12 C11 H111 109.4 109.5
C12 C11 H112 109.4 109.5
H121 C12 H122 109.9 109.4
O5 C11 H111 109.4 109.5
O5 C11 H112 109.4 109.5
C11 O5 C10 113.4 106.8
H111 C11 H112 109.5 109.4
O5 C10 C9 109.6 109.5
O5 C10 H101 109.4 109.5
O5 C10 H102 109.4 109.5
C9 C10 H101 109.4 109.5
C9 C10 H102 109.5 109.4
C10 C9 O4 109.2 109.4
C10 C9 H91 109.6 109.5
C10 C9 H92 109.6 109.4
H101 C10 H102 109.5 109.4
O4 C9 H91 109.6 109.5
O4 C9 H92 109.6 109.5
C9 O4 C8 112.9 106.8
H91 C9 H92 109.3 109.5
O4 C8 C7 111.1 109.5
O4 C8 H81 108.6 109.5
O4 C8 H82 108.9 109.5
C7 C8 H81 108.6 109.4
C7 C8 H82 108.9 109.5
C8 C7 O3 107.8 109.5
C8 C7 H71 110.4 109.5
C8 C7 H72 110.0 109.5
H81 C8 H82 110.8 109.5
O3 C7 H71 110.4 109.5
O3 C7 H72 110.0 109.5
C7 O3 C6 115.4 106.8
H71 C7 H72 108.2 109.4
O3 C6 C5 108.4 109.5
O3 C6 H61 110.1 109.4
O3 C6 H62 109.9 109.5
C5 C6 H61 110.1 109.5
C5 C6 H62 109.8 109.5
C6 C5 O2 108.4 109.5
C6 C5 H51 110.0 109.5
C6 C5 H52 109.8 109.5
H61 C6 H62 108.6 109.5
O2 C5 H51 110.1 109.5
O2 C5 H52 109.8 109.4
C5 O2 C4 113.7 106.8
H51 C5 H52 108.7 109.5
O2 C4 C3 108.8 109.5
O2 C4 H41 109.9 109.5
O2 C4 H42 109.7 109.5
C3 C4 H41 109.9 109.5
C3 C4 H42 109.7 109.4
C4 C3 O1 109.7 109.4
C4 C3 H31 109.3 109.5
C4 C3 H32 109.4 109.5
H41 C4 H42 108.9 109.4
O1 C3 H31 109.3 109.5
O1 C3 H32 109.4 109.4
C3 O1 C2 114.6 106.8
H31 C3 H32 109.6 109.5
O1 C2 C1 111.8 109.5
O1 C2 H21 108.2 109.5
O1 C2 H22 108.7 109.5
C1 C2 H21 108.2 109.5
C1 C2 H22 108.7 109.4
C2 C1 OXT 110.7 109.5
C2 C1 H11 108.8 109.5
C2 C1 H12 109.1 109.5
H21 C2 H22 111.3 109.5
OXT C1 H11 108.8 109.5
OXT C1 H12 109.1 109.5
C1 OXT HOXT 109.5 106.8
H11 C1 H12 110.4 109.4

Torsion Angles for P15

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H131 C13 O6 H132 120.0 240.1
H131 C13 O6 H133 240.0 120.0
H132 C13 O6 H133 120.0 240.0
C13 O6 C12 C11 156.6 180.0
C13 O6 C12 H121 36.8 300.0
C13 O6 C12 H122 276.6 60.0
O6 C13 H131 H132 240.0 119.9
O6 C13 H131 H133 120.0 240.0
H131 C13 O6 C12 55.8 60.0
H132 C13 H131 H133 240.0 120.1
O6 C13 H132 H131 120.0 240.1
O6 C13 H132 H133 240.0 120.0
H132 C13 O6 C12 295.7 180.0
H131 C13 H132 H133 120.0 239.9
O6 C13 H133 H131 240.0 120.0
O6 C13 H133 H132 120.0 240.0
H133 C13 O6 C12 175.7 300.0
H131 C13 H133 H132 240.0 120.1
C12 O6 C13 H131 55.8 60.0
C12 O6 C13 H132 295.7 180.0
C12 O6 C13 H133 175.7 300.0
C11 C12 O6 H121 119.8 240.0
C11 C12 O6 H122 240.0 120.0
O6 C12 C11 O5 57.5 65.0
O6 C12 C11 H111 297.5 185.0
O6 C12 C11 H112 177.5 305.0
H121 C12 O6 H122 120.2 240.0
O6 C12 C11 H121 240.2 120.1
O6 C12 C11 H122 120.0 240.0
H121 C12 C11 H122 239.8 119.9
O5 C11 C12 H111 120.0 240.0
O5 C11 C12 H112 240.0 120.0
C12 C11 O5 C10 193.7 180.0
H111 C11 C12 H112 120.0 240.0
O6 C12 H121 C11 120.3 240.0
O6 C12 H121 H122 240.2 120.0
C11 C12 H121 H122 119.9 240.0
H121 C12 C11 O5 177.3 305.0
H121 C12 C11 H111 57.3 65.0
H121 C12 C11 H112 297.3 184.9
O6 C12 H122 C11 239.5 120.0
O6 C12 H122 H121 119.8 240.0
C11 C12 H122 H121 240.2 120.0
H122 C12 C11 O5 297.5 185.0
H122 C12 C11 H111 177.5 305.0
H122 C12 C11 H112 57.5 65.0
O5 C11 C12 H121 177.3 305.0
O5 C11 C12 H122 297.5 185.0
C12 C11 O5 H111 240.0 120.0
C12 C11 O5 H112 120.0 240.0
H111 C11 O5 H112 240.0 120.0
C11 O5 C10 C9 163.3 180.0
C11 O5 C10 H101 43.3 300.0
C11 O5 C10 H102 283.3 60.0
H111 C11 C12 H121 57.3 65.0
H111 C11 C12 H122 177.5 305.0
C12 C11 H111 O5 120.1 240.0
C12 C11 H111 H112 240.0 120.0
O5 C11 H111 H112 120.0 240.0
H111 C11 O5 C10 313.7 60.0
H112 C11 C12 H121 297.3 184.9
H112 C11 C12 H122 57.5 65.0
C12 C11 H112 O5 239.9 120.0
C12 C11 H112 H111 119.9 240.0
O5 C11 H112 H111 240.0 120.0
H112 C11 O5 C10 73.7 300.0
C10 O5 C11 H111 313.7 60.0
C10 O5 C11 H112 73.7 300.0
C9 C10 O5 H101 120.0 240.0
C9 C10 O5 H102 240.0 120.0
O5 C10 C9 O4 244.4 65.0
O5 C10 C9 H91 124.3 185.0
O5 C10 C9 H92 4.4 305.0
H101 C10 O5 H102 120.0 240.0
O5 C10 C9 H101 240.0 120.1
O5 C10 C9 H102 120.0 240.0
H101 C10 C9 H102 240.0 119.9
O4 C9 C10 H91 120.1 240.0
O4 C9 C10 H92 240.0 119.9
C10 C9 O4 C8 132.1 180.0
H91 C9 C10 H92 119.9 240.0
O5 C10 H101 C9 120.0 239.9
O5 C10 H101 H102 240.0 120.0
C9 C10 H101 H102 120.0 240.1
H101 C10 C9 O4 4.4 304.9
H101 C10 C9 H91 244.3 64.9
H101 C10 C9 H92 124.3 185.0
O5 C10 H102 C9 239.9 120.0
O5 C10 H102 H101 120.0 240.0
C9 C10 H102 H101 240.0 119.9
H102 C10 C9 O4 124.4 185.0
H102 C10 C9 H91 4.3 305.0
H102 C10 C9 H92 244.4 65.1
O4 C9 C10 H101 4.4 304.9
O4 C9 C10 H102 124.4 185.0
C10 C9 O4 H91 239.9 120.0
C10 C9 O4 H92 120.0 240.1
H91 C9 O4 H92 240.1 120.1
C9 O4 C8 C7 184.9 180.0
C9 O4 C8 H81 65.6 300.0
C9 O4 C8 H82 304.9 60.0
H91 C9 C10 H101 244.3 64.9
H91 C9 C10 H102 4.3 305.0
C10 C9 H91 O4 119.8 240.0
C10 C9 H91 H92 239.9 120.0
O4 C9 H91 H92 120.1 240.0
H91 C9 O4 C8 252.2 60.0
H92 C9 C10 H101 124.3 185.0
H92 C9 C10 H102 244.4 65.1
C10 C9 H92 O4 240.2 119.9
C10 C9 H92 H91 120.1 240.0
O4 C9 H92 H91 239.9 120.1
H92 C9 O4 C8 12.1 300.0
C8 O4 C9 H91 252.2 60.0
C8 O4 C9 H92 12.1 300.0
C7 C8 O4 H81 119.3 240.0
C7 C8 O4 H82 240.0 120.0
O4 C8 C7 O3 135.0 65.0
O4 C8 C7 H71 14.3 185.0
O4 C8 C7 H72 255.0 305.0
H81 C8 O4 H82 120.7 240.0
O4 C8 C7 H81 240.7 120.0
O4 C8 C7 H82 120.0 240.0
H81 C8 C7 H82 239.3 120.0
O3 C7 C8 H71 120.7 239.9
O3 C7 C8 H72 240.0 120.0
C8 C7 O3 C6 219.9 180.0
H71 C7 C8 H72 119.3 240.1
O4 C8 H81 C7 120.9 240.0
O4 C8 H81 H82 240.4 120.1
C7 C8 H81 H82 119.6 240.0
H81 C8 C7 O3 254.3 305.0
H81 C8 C7 H71 133.6 65.0
H81 C8 C7 H72 14.3 185.0
O4 C8 H82 C7 238.7 120.0
O4 C8 H82 H81 119.3 240.0
C7 C8 H82 H81 240.7 120.0
H82 C8 C7 O3 15.0 185.0
H82 C8 C7 H71 254.3 305.1
H82 C8 C7 H72 135.0 65.0
O3 C7 C8 H81 254.3 305.0
O3 C7 C8 H82 15.0 185.0
C8 C7 O3 H71 239.3 120.1
C8 C7 O3 H72 120.0 240.0
H71 C7 O3 H72 240.7 119.9
C7 O3 C6 C5 157.9 180.0
C7 O3 C6 H61 37.5 300.0
C7 O3 C6 H62 277.9 60.0
H71 C7 C8 H81 133.6 65.0
H71 C7 C8 H82 254.3 305.1
C8 C7 H71 O3 119.1 239.9
C8 C7 H71 H72 239.6 120.0
O3 C7 H71 H72 120.4 240.0
H71 C7 O3 C6 340.5 59.9
H72 C7 C8 H81 14.3 185.0
H72 C7 C8 H82 135.0 65.0
C8 C7 H72 O3 241.3 120.0
C8 C7 H72 H71 120.7 240.0
O3 C7 H72 H71 239.3 120.0
H72 C7 O3 C6 99.9 300.0
C6 O3 C7 H71 340.5 59.9
C6 O3 C7 H72 99.9 300.0
C5 C6 O3 H61 120.4 240.0
C5 C6 O3 H62 240.0 120.0
O3 C6 C5 O2 256.0 65.0
O3 C6 C5 H51 135.6 185.0
O3 C6 C5 H52 16.0 305.0
H61 C6 O3 H62 119.6 240.0
O3 C6 C5 H61 239.6 120.0
O3 C6 C5 H62 120.0 240.0
H61 C6 C5 H62 240.4 120.0
O2 C5 C6 H51 120.4 240.0
O2 C5 C6 H52 240.0 120.0
C6 C5 O2 C4 160.4 180.0
H51 C5 C6 H52 119.6 240.0
O3 C6 H61 C5 119.4 240.0
O3 C6 H61 H62 239.7 120.0
C5 C6 H61 H62 120.3 240.0
H61 C6 C5 O2 16.4 305.0
H61 C6 C5 H51 256.0 65.0
H61 C6 C5 H52 136.4 185.0
O3 C6 H62 C5 240.9 120.0
O3 C6 H62 H61 120.4 240.0
C5 C6 H62 H61 239.6 120.0
H62 C6 C5 O2 136.0 185.0
H62 C6 C5 H51 15.6 305.0
H62 C6 C5 H52 256.0 65.0
O2 C5 C6 H61 16.4 305.0
O2 C5 C6 H62 136.0 185.0
C6 C5 O2 H51 239.6 120.0
C6 C5 O2 H52 120.0 240.0
H51 C5 O2 H52 240.4 120.0
C5 O2 C4 C3 197.7 180.0
C5 O2 C4 H41 77.4 300.0
C5 O2 C4 H42 317.7 60.0
H51 C5 C6 H61 256.0 65.0
H51 C5 C6 H62 15.6 305.0
C6 C5 H51 O2 119.4 240.0
C6 C5 H51 H52 239.7 120.0
O2 C5 H51 H52 120.3 240.0
H51 C5 O2 C4 280.8 60.0
H52 C5 C6 H61 136.4 185.0
H52 C5 C6 H62 256.0 65.0
C6 C5 H52 O2 240.9 120.0
C6 C5 H52 H51 120.4 240.0
O2 C5 H52 H51 239.6 120.0
H52 C5 O2 C4 40.4 300.0
C4 O2 C5 H51 280.8 60.0
C4 O2 C5 H52 40.4 300.0
C3 C4 O2 H41 120.3 240.0
C3 C4 O2 H42 240.0 120.0
O2 C4 C3 O1 304.7 65.0
O2 C4 C3 H31 184.8 185.0
O2 C4 C3 H32 64.7 305.1
H41 C4 O2 H42 119.7 240.0
O2 C4 C3 H41 239.7 120.1
O2 C4 C3 H42 120.0 240.0
H41 C4 C3 H42 240.3 120.0
O1 C3 C4 H31 119.9 240.0
O1 C3 C4 H32 240.0 119.9
C4 C3 O1 C2 102.7 180.0
H31 C3 C4 H32 120.1 240.0
O2 C4 H41 C3 119.6 240.0
O2 C4 H41 H42 239.8 120.0
C3 C4 H41 H42 120.2 240.0
H41 C4 C3 O1 65.0 305.0
H41 C4 C3 H31 305.1 65.0
H41 C4 C3 H32 185.0 185.0
O2 C4 H42 C3 240.6 120.0
O2 C4 H42 H41 120.3 240.0
C3 C4 H42 H41 239.7 120.0
H42 C4 C3 O1 184.7 185.0
H42 C4 C3 H31 64.8 305.0
H42 C4 C3 H32 304.7 65.0
O1 C3 C4 H41 65.0 305.0
O1 C3 C4 H42 184.7 185.0
C4 C3 O1 H31 240.1 120.0
C4 C3 O1 H32 120.0 240.1
H31 C3 O1 H32 239.9 120.0
C3 O1 C2 C1 74.5 180.0
C3 O1 C2 H21 315.5 300.0
C3 O1 C2 H22 194.5 60.0
H31 C3 C4 H41 305.1 65.0
H31 C3 C4 H42 64.8 305.0
C4 C3 H31 O1 120.1 240.0
C4 C3 H31 H32 240.0 120.0
O1 C3 H31 H32 119.9 240.0
H31 C3 O1 C2 222.6 60.0
H32 C3 C4 H41 185.0 185.0
H32 C3 C4 H42 304.7 65.0
C4 C3 H32 O1 239.8 119.9
C4 C3 H32 H31 119.9 240.0
O1 C3 H32 H31 240.1 120.0
H32 C3 O1 C2 342.7 299.9
C2 O1 C3 H31 222.6 60.0
C2 O1 C3 H32 342.7 299.9
C1 C2 O1 H21 119.0 240.0
C1 C2 O1 H22 240.0 120.0
O1 C2 C1 OXT 25.0 65.0
O1 C2 C1 H11 265.6 185.0
O1 C2 C1 H12 145.1 305.0
H21 C2 O1 H22 120.9 240.0
O1 C2 C1 H21 241.0 120.0
O1 C2 C1 H22 120.0 240.0
H21 C2 C1 H22 239.0 120.0
OXT C1 C2 H11 119.5 240.0
OXT C1 C2 H12 240.0 120.0
C2 C1 OXT HOXT 330.2 180.0
H11 C1 C2 H12 120.5 240.0
O1 C2 H21 C1 121.3 240.0
O1 C2 H21 H22 240.7 120.0
C1 C2 H21 H22 119.4 240.0
H21 C2 C1 OXT 144.1 305.0
H21 C2 C1 H11 24.6 65.0
H21 C2 C1 H12 264.1 185.0
O1 C2 H22 C1 238.1 120.0
O1 C2 H22 H21 119.1 240.0
C1 C2 H22 H21 240.9 120.0
H22 C2 C1 OXT 265.1 185.0
H22 C2 C1 H11 145.6 305.0
H22 C2 C1 H12 25.1 65.0
OXT C1 C2 H21 144.1 305.0
OXT C1 C2 H22 265.1 185.0
C2 C1 OXT H11 240.5 120.0
C2 C1 OXT H12 120.0 239.9
H11 C1 OXT H12 239.5 119.9
H11 C1 C2 H21 24.6 65.0
H11 C1 C2 H22 145.6 305.0
C2 C1 H11 OXT 120.7 240.0
C2 C1 H11 H12 240.3 120.1
OXT C1 H11 H12 119.7 240.1
H11 C1 OXT HOXT 89.6 59.9
H12 C1 C2 H21 264.1 185.0
H12 C1 C2 H22 25.1 65.0
C2 C1 H12 OXT 239.0 120.0
C2 C1 H12 H11 119.5 240.0
OXT C1 H12 H11 240.5 120.0
H12 C1 OXT HOXT 210.1 300.0
HOXT OXT C1 H11 89.6 59.9
HOXT OXT C1 H12 210.1 300.0