PDB Chemical Component P06
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for P06
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C47 |
C50 |
1.395 |
1.382 |
| C47 |
C44 |
1.396 |
1.382 |
| C50 |
C49 |
1.394 |
1.386 |
| C44 |
C46 |
1.394 |
1.385 |
| C49 |
F52 |
1.340 |
1.350 |
| C49 |
C43 |
1.396 |
1.384 |
| C46 |
C43 |
1.393 |
1.384 |
| C46 |
F53 |
1.338 |
1.351 |
| C43 |
S42 |
1.776 |
1.762 |
| C7 |
N6 |
1.348 |
1.325 |
| C7 |
C4 |
1.376 |
1.382 |
| N6 |
C1 |
1.350 |
1.325 |
| C4 |
C2 |
1.383 |
1.402 |
| S42 |
O55 |
1.451 |
1.421 |
| S42 |
N40 |
1.716 |
1.656 |
| S42 |
O54 |
1.451 |
1.421 |
| C33 |
C37 |
1.398 |
1.382 |
| C33 |
C31 |
1.397 |
1.389 |
| C1 |
N9 |
1.386 |
1.384 |
| C1 |
N3 |
1.357 |
1.324 |
| N40 |
C31 |
1.438 |
1.399 |
| C37 |
C35 |
1.399 |
1.380 |
| C31 |
C32 |
1.392 |
1.388 |
| C2 |
N3 |
1.356 |
1.334 |
| C2 |
C12 |
1.466 |
1.474 |
| C35 |
C30 |
1.401 |
1.395 |
| C32 |
C30 |
1.395 |
1.394 |
| C32 |
F39 |
1.342 |
1.351 |
| C30 |
C16 |
1.451 |
1.481 |
| C12 |
C16 |
1.391 |
1.375 |
| C12 |
S13 |
1.726 |
1.762 |
| C16 |
N15 |
1.382 |
1.321 |
| S13 |
C14 |
1.723 |
1.708 |
| N15 |
C14 |
1.315 |
1.289 |
| C14 |
C17 |
1.528 |
1.507 |
| C17 |
C26 |
1.539 |
1.530 |
| C17 |
C18 |
1.539 |
1.530 |
| C17 |
C22 |
1.544 |
1.530 |
| C4 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.080 |
1.079 |
| N9 |
H3 |
1.000 |
0.969 |
| N9 |
H4 |
1.000 |
0.970 |
| C18 |
H5 |
1.101 |
1.090 |
| C18 |
H6 |
1.100 |
1.090 |
| C18 |
H7 |
1.100 |
1.091 |
| C22 |
H8 |
1.100 |
1.090 |
| C22 |
H9 |
1.100 |
1.090 |
| C22 |
H10 |
1.100 |
1.090 |
| C26 |
H11 |
1.100 |
1.090 |
| C26 |
H12 |
1.100 |
1.090 |
| C26 |
H13 |
1.100 |
1.091 |
| C33 |
H14 |
1.080 |
1.080 |
| C35 |
H15 |
1.080 |
1.080 |
| C37 |
H16 |
1.080 |
1.080 |
| N40 |
H17 |
1.000 |
0.971 |
| C44 |
H18 |
1.080 |
1.080 |
| C47 |
H19 |
1.080 |
1.080 |
| C50 |
H20 |
1.080 |
1.080 |
Bond Angles for P06
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C47 |
C50 |
C49 |
120.0 |
120.0 |
| C50 |
C47 |
H19 |
120.2 |
120.0 |
| C47 |
C50 |
H20 |
120.0 |
120.0 |
| C47 |
C44 |
H18 |
120.0 |
120.0 |
| C50 |
C49 |
F52 |
118.6 |
120.0 |
| C44 |
C46 |
F53 |
118.3 |
120.0 |
| C46 |
C44 |
H18 |
119.9 |
120.0 |
| C43 |
S42 |
O55 |
105.6 |
106.4 |
| C43 |
S42 |
O54 |
109.2 |
106.4 |
| C7 |
C4 |
H1 |
122.1 |
120.8 |
| N6 |
C1 |
N9 |
118.0 |
119.2 |
| C4 |
C2 |
C12 |
123.3 |
120.5 |
| O54 |
S42 |
O55 |
119.1 |
123.1 |
| S42 |
N40 |
H17 |
106.1 |
120.0 |
| C33 |
C37 |
C35 |
120.6 |
120.2 |
| C37 |
C33 |
H14 |
120.2 |
119.9 |
| C33 |
C37 |
H16 |
119.7 |
119.9 |
| N3 |
C1 |
N9 |
118.6 |
119.1 |
| C1 |
N9 |
H3 |
109.5 |
120.0 |
| C1 |
N9 |
H4 |
109.4 |
120.0 |
| C1 |
N3 |
C2 |
117.8 |
120.6 |
| C37 |
C35 |
H15 |
119.9 |
120.0 |
| C31 |
C32 |
F39 |
118.3 |
120.1 |
| N3 |
C2 |
C12 |
114.5 |
120.5 |
| C2 |
C12 |
C16 |
134.0 |
126.2 |
| C2 |
C12 |
S13 |
118.0 |
126.2 |
| S13 |
C12 |
C16 |
108.0 |
107.7 |
| C12 |
C16 |
N15 |
115.7 |
113.5 |
| C12 |
S13 |
C14 |
91.1 |
90.5 |
| S13 |
C14 |
C17 |
122.5 |
124.5 |
| N15 |
C14 |
C17 |
123.6 |
124.6 |
| C14 |
C17 |
C26 |
110.3 |
109.4 |
| C14 |
C17 |
C18 |
111.8 |
109.5 |
| C14 |
C17 |
C22 |
109.5 |
109.5 |
| C18 |
C17 |
C26 |
109.4 |
109.5 |
| C22 |
C17 |
C26 |
108.2 |
109.5 |
| C17 |
C26 |
H11 |
109.5 |
109.5 |
| C17 |
C26 |
H12 |
109.5 |
109.5 |
| C17 |
C26 |
H13 |
109.5 |
109.4 |
| C18 |
C17 |
C22 |
107.5 |
109.5 |
| C17 |
C18 |
H5 |
109.5 |
109.5 |
| C17 |
C18 |
H6 |
109.5 |
109.4 |
| C17 |
C18 |
H7 |
109.5 |
109.4 |
| C17 |
C22 |
H8 |
109.5 |
109.5 |
| C17 |
C22 |
H9 |
109.5 |
109.4 |
| C17 |
C22 |
H10 |
109.5 |
109.4 |
| H3 |
N9 |
H4 |
109.5 |
120.0 |
| H5 |
C18 |
H6 |
109.4 |
109.6 |
| H5 |
C18 |
H7 |
109.5 |
109.5 |
| H6 |
C18 |
H7 |
109.5 |
109.5 |
| H8 |
C22 |
H9 |
109.5 |
109.5 |
| H8 |
C22 |
H10 |
109.4 |
109.5 |
| H9 |
C22 |
H10 |
109.5 |
109.5 |
| H11 |
C26 |
H12 |
109.5 |
109.5 |
| H11 |
C26 |
H13 |
109.4 |
109.5 |
| H12 |
C26 |
H13 |
109.5 |
109.4 |
Torsion Angles for P06
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C50 |
C47 |
C44 |
H18 |
179.7 |
179.8 |
| C47 |
C50 |
C49 |
F52 |
180.0 |
180.0 |
| C47 |
C44 |
C46 |
F53 |
180.0 |
180.0 |
| C46 |
C44 |
C47 |
H18 |
180.0 |
180.0 |
| C49 |
C50 |
C47 |
H19 |
180.1 |
180.0 |
| C47 |
C50 |
C49 |
H20 |
180.0 |
179.9 |
| C47 |
C44 |
C46 |
H18 |
180.0 |
180.0 |
| C49 |
C43 |
S42 |
O55 |
46.1 |
23.3 |
| C49 |
C43 |
S42 |
O54 |
175.3 |
156.1 |
| C46 |
C43 |
S42 |
O55 |
226.2 |
203.6 |
| C46 |
C43 |
S42 |
O54 |
355.4 |
336.4 |
| F53 |
C46 |
C44 |
H18 |
0.0 |
360.0 |
| O54 |
S42 |
C43 |
O55 |
129.2 |
132.9 |
| C43 |
S42 |
N40 |
H17 |
38.3 |
239.9 |
| N6 |
C7 |
C4 |
H1 |
179.6 |
180.0 |
| C7 |
N6 |
C1 |
N9 |
180.0 |
180.0 |
| C7 |
C4 |
C2 |
C12 |
179.7 |
179.8 |
| N3 |
C1 |
N6 |
N9 |
180.1 |
179.7 |
| N6 |
C1 |
N9 |
H3 |
0.0 |
174.8 |
| N6 |
C1 |
N9 |
H4 |
120.0 |
354.7 |
| N3 |
C2 |
C4 |
C12 |
180.8 |
180.1 |
| C4 |
C2 |
C12 |
C16 |
11.6 |
174.2 |
| C4 |
C2 |
C12 |
S13 |
192.2 |
354.5 |
| C43 |
S42 |
O55 |
O54 |
123.1 |
122.9 |
| O55 |
S42 |
N40 |
H17 |
286.9 |
126.4 |
| C43 |
S42 |
O54 |
O55 |
238.7 |
237.1 |
| O54 |
S42 |
N40 |
H17 |
154.6 |
353.5 |
| C33 |
C37 |
C35 |
H15 |
179.7 |
180.0 |
| C33 |
C31 |
C32 |
F39 |
179.8 |
180.0 |
| N9 |
C1 |
N3 |
C2 |
180.1 |
180.0 |
| H3 |
N9 |
C1 |
H4 |
240.0 |
180.1 |
| N6 |
C1 |
N3 |
N9 |
179.9 |
180.3 |
| N3 |
C1 |
N9 |
H3 |
179.9 |
355.0 |
| N3 |
C1 |
N9 |
H4 |
299.9 |
175.0 |
| C1 |
N3 |
C2 |
C12 |
180.4 |
180.0 |
| C35 |
C37 |
C33 |
H14 |
179.9 |
180.0 |
| C33 |
C37 |
C35 |
H16 |
180.0 |
179.7 |
| C4 |
C2 |
N3 |
C12 |
179.3 |
179.9 |
| C2 |
N3 |
C1 |
N9 |
180.1 |
180.0 |
| N3 |
C2 |
C12 |
C16 |
190.9 |
354.1 |
| N3 |
C2 |
C12 |
S13 |
11.5 |
174.5 |
| S13 |
C12 |
C2 |
C16 |
180.6 |
180.4 |
| C2 |
C12 |
C16 |
N15 |
180.5 |
179.9 |
| C2 |
C12 |
S13 |
C14 |
179.6 |
180.0 |
| C2 |
C12 |
C16 |
S13 |
180.5 |
180.3 |
| C16 |
C12 |
S13 |
C14 |
0.1 |
0.3 |
| C2 |
C12 |
S13 |
C16 |
179.6 |
179.7 |
| S13 |
C12 |
C16 |
N15 |
360.0 |
359.5 |
| C12 |
S13 |
C14 |
C17 |
180.1 |
180.0 |
| C16 |
N15 |
C14 |
C17 |
179.9 |
179.7 |
| C14 |
S13 |
C12 |
C16 |
0.1 |
0.3 |
| N15 |
C14 |
S13 |
C17 |
179.9 |
179.9 |
| S13 |
C14 |
C17 |
C26 |
115.1 |
240.0 |
| S13 |
C14 |
C17 |
C18 |
353.2 |
360.0 |
| S13 |
C14 |
C17 |
C22 |
234.1 |
120.0 |
| C12 |
C16 |
N15 |
C14 |
360.0 |
0.5 |
| S13 |
C14 |
N15 |
C17 |
180.1 |
180.1 |
| N15 |
C14 |
C17 |
C26 |
295.3 |
60.1 |
| N15 |
C14 |
C17 |
C18 |
173.3 |
180.0 |
| N15 |
C14 |
C17 |
C22 |
54.2 |
300.1 |
| C18 |
C17 |
C14 |
C26 |
238.1 |
120.0 |
| C22 |
C17 |
C14 |
C26 |
118.9 |
240.0 |
| C14 |
C17 |
C26 |
H11 |
180.0 |
60.0 |
| C14 |
C17 |
C26 |
H12 |
300.0 |
180.0 |
| C14 |
C17 |
C26 |
H13 |
60.0 |
300.0 |
| C18 |
C17 |
C14 |
C22 |
119.1 |
240.0 |
| C14 |
C17 |
C18 |
H5 |
180.0 |
60.0 |
| C14 |
C17 |
C18 |
H6 |
300.0 |
180.1 |
| C14 |
C17 |
C18 |
H7 |
60.0 |
300.0 |
| C14 |
C17 |
C22 |
H8 |
180.0 |
60.0 |
| C14 |
C17 |
C22 |
H9 |
300.0 |
180.0 |
| C14 |
C17 |
C22 |
H10 |
60.0 |
300.0 |
| C14 |
C17 |
C26 |
C18 |
236.6 |
120.0 |
| C14 |
C17 |
C26 |
C22 |
119.8 |
240.0 |
| C18 |
C17 |
C26 |
C22 |
243.2 |
120.0 |
| C26 |
C17 |
C18 |
H5 |
57.5 |
180.0 |
| C26 |
C17 |
C18 |
H6 |
177.5 |
300.0 |
| C26 |
C17 |
C18 |
H7 |
297.5 |
60.0 |
| C26 |
C17 |
C22 |
H8 |
300.2 |
300.0 |
| C26 |
C17 |
C22 |
H9 |
60.2 |
60.0 |
| C26 |
C17 |
C22 |
H10 |
180.2 |
180.0 |
| H11 |
C26 |
C17 |
H12 |
240.0 |
239.9 |
| H11 |
C26 |
C17 |
H13 |
120.0 |
120.0 |
| H12 |
C26 |
C17 |
H13 |
240.0 |
240.0 |
| C14 |
C17 |
C18 |
C26 |
122.5 |
240.0 |
| C14 |
C17 |
C18 |
C22 |
239.7 |
120.0 |
| C22 |
C17 |
C18 |
C26 |
242.8 |
120.0 |
| C18 |
C17 |
C26 |
H11 |
303.4 |
300.0 |
| C18 |
C17 |
C26 |
H12 |
63.4 |
60.0 |
| C18 |
C17 |
C26 |
H13 |
183.4 |
180.0 |
| C18 |
C17 |
C22 |
H8 |
58.2 |
180.0 |
| C18 |
C17 |
C22 |
H9 |
178.3 |
300.0 |
| C18 |
C17 |
C22 |
H10 |
298.2 |
60.0 |
| H5 |
C18 |
C17 |
H6 |
240.0 |
239.9 |
| H5 |
C18 |
C17 |
H7 |
120.0 |
120.0 |
| H6 |
C18 |
C17 |
H7 |
240.0 |
240.1 |
| C14 |
C17 |
C22 |
C26 |
239.8 |
120.0 |
| C14 |
C17 |
C22 |
C18 |
121.7 |
240.0 |
| C18 |
C17 |
C22 |
C26 |
118.0 |
240.0 |
| C22 |
C17 |
C26 |
H11 |
60.2 |
180.0 |
| C22 |
C17 |
C26 |
H12 |
180.2 |
300.0 |
| C22 |
C17 |
C26 |
H13 |
300.2 |
60.0 |
| C22 |
C17 |
C18 |
H5 |
300.3 |
299.9 |
| C22 |
C17 |
C18 |
H6 |
60.3 |
60.0 |
| C22 |
C17 |
C18 |
H7 |
180.3 |
180.0 |
| H8 |
C22 |
C17 |
H9 |
240.0 |
240.0 |
| H8 |
C22 |
C17 |
H10 |
120.0 |
120.0 |
| H9 |
C22 |
C17 |
H10 |
240.0 |
240.1 |
| H1 |
C4 |
C2 |
C12 |
359.6 |
359.9 |
| H2 |
C7 |
C4 |
H1 |
359.6 |
0.1 |
| C1 |
N9 |
H3 |
H4 |
120.0 |
179.9 |
| C1 |
N9 |
H4 |
H3 |
240.0 |
180.1 |
| H5 |
C18 |
C17 |
C26 |
57.5 |
180.0 |
| H5 |
C18 |
C17 |
C22 |
300.3 |
299.9 |
| C17 |
C18 |
H5 |
H6 |
120.0 |
120.0 |
| C17 |
C18 |
H5 |
H7 |
240.0 |
240.1 |
| H6 |
C18 |
H5 |
H7 |
120.0 |
120.0 |
| H6 |
C18 |
C17 |
C26 |
177.5 |
300.0 |
| H6 |
C18 |
C17 |
C22 |
60.3 |
60.0 |
| C17 |
C18 |
H6 |
H5 |
240.0 |
240.0 |
| C17 |
C18 |
H6 |
H7 |
120.0 |
119.9 |
| H5 |
C18 |
H6 |
H7 |
240.0 |
239.9 |
| H7 |
C18 |
C17 |
C26 |
297.5 |
60.0 |
| H7 |
C18 |
C17 |
C22 |
180.3 |
180.0 |
| C17 |
C18 |
H7 |
H5 |
120.0 |
120.0 |
| C17 |
C18 |
H7 |
H6 |
240.0 |
240.1 |
| H5 |
C18 |
H7 |
H6 |
120.0 |
120.1 |
| H8 |
C22 |
C17 |
C26 |
300.2 |
300.0 |
| C17 |
C22 |
H8 |
H9 |
120.0 |
120.0 |
| C17 |
C22 |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C22 |
H8 |
H10 |
120.0 |
120.0 |
| H9 |
C22 |
C17 |
C26 |
60.2 |
60.0 |
| C17 |
C22 |
H9 |
H8 |
239.9 |
240.0 |
| C17 |
C22 |
H9 |
H10 |
120.0 |
119.9 |
| H8 |
C22 |
H9 |
H10 |
240.0 |
239.9 |
| H10 |
C22 |
C17 |
C26 |
180.2 |
180.0 |
| C17 |
C22 |
H10 |
H8 |
120.0 |
120.0 |
| C17 |
C22 |
H10 |
H9 |
240.0 |
240.1 |
| H8 |
C22 |
H10 |
H9 |
120.0 |
120.1 |
| C17 |
C26 |
H11 |
H12 |
120.0 |
120.1 |
| C17 |
C26 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C26 |
H11 |
H13 |
120.0 |
120.0 |
| C17 |
C26 |
H12 |
H11 |
240.0 |
240.0 |
| C17 |
C26 |
H12 |
H13 |
120.0 |
119.9 |
| H11 |
C26 |
H12 |
H13 |
240.1 |
240.0 |
| C17 |
C26 |
H13 |
H11 |
120.0 |
120.0 |
| C17 |
C26 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C26 |
H13 |
H12 |
120.0 |
120.0 |
| H14 |
C33 |
C37 |
C35 |
179.9 |
180.0 |
| H14 |
C33 |
C37 |
H16 |
359.9 |
359.7 |
| C33 |
C37 |
H16 |
C35 |
180.0 |
180.3 |
| H16 |
C37 |
C33 |
H14 |
359.9 |
359.7 |
| H16 |
C37 |
C35 |
H15 |
359.7 |
0.3 |
| H18 |
C44 |
C46 |
F53 |
0.0 |
360.0 |
| H19 |
C47 |
C50 |
C49 |
180.1 |
180.0 |
| H19 |
C47 |
C50 |
H20 |
0.1 |
359.9 |
| H19 |
C47 |
C44 |
H18 |
359.7 |
360.0 |
| C47 |
C50 |
H20 |
C49 |
180.0 |
180.1 |
| H20 |
C50 |
C47 |
H19 |
0.1 |
359.9 |
| H20 |
C50 |
C49 |
F52 |
360.0 |
0.2 |