PDB Chemical Component OYS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OYS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
NAA |
SAT |
1.610 |
1.657 |
NAA |
HNAA |
1.000 |
0.970 |
NAA |
HNAB |
1.000 |
0.969 |
CAP |
OAB |
1.223 |
1.213 |
OAC |
SAT |
1.448 |
1.421 |
SAT |
OAD |
1.466 |
1.421 |
CAF |
CAE |
1.391 |
1.382 |
CAE |
CAG |
1.410 |
1.383 |
CAE |
HAE |
1.080 |
1.080 |
CAH |
CAF |
1.393 |
1.383 |
CAF |
HAF |
1.080 |
1.080 |
CAI |
CAG |
1.402 |
1.382 |
CAG |
HAG |
1.080 |
1.080 |
CAH |
CAQ |
1.404 |
1.382 |
CAH |
HAH |
1.080 |
1.080 |
CAQ |
CAI |
1.372 |
1.382 |
CAI |
HAI |
1.080 |
1.080 |
CAR |
CAJ |
1.385 |
1.388 |
CAJ |
CAL |
1.385 |
1.381 |
CAJ |
HAJ |
1.080 |
1.080 |
CAR |
CAK |
1.401 |
1.389 |
CAK |
CAM |
1.398 |
1.381 |
CAK |
HAK |
1.080 |
1.079 |
CAL |
CAS |
1.397 |
1.383 |
CAL |
HAL |
1.080 |
1.080 |
CAM |
CAS |
1.398 |
1.383 |
CAM |
HAM |
1.080 |
1.081 |
CAN |
CAP |
1.494 |
1.508 |
CAN |
CAQ |
1.485 |
1.507 |
CAN |
HAN |
1.100 |
1.090 |
CAN |
HANA |
1.100 |
1.090 |
CAP |
NAO |
1.409 |
1.347 |
NAO |
CAR |
1.414 |
1.400 |
NAO |
HNAO |
1.000 |
0.970 |
CAS |
SAT |
1.768 |
1.762 |
Bond Angles for OYS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
SAT |
NAA |
HNAA |
109.5 |
120.0 |
SAT |
NAA |
HNAB |
109.5 |
120.0 |
NAA |
SAT |
OAC |
113.5 |
106.4 |
NAA |
SAT |
OAD |
110.5 |
106.4 |
NAA |
SAT |
CAS |
107.7 |
107.2 |
HNAA |
NAA |
HNAB |
109.5 |
120.1 |
OAC |
SAT |
OAD |
114.3 |
123.2 |
OAC |
SAT |
CAS |
104.3 |
106.4 |
CAF |
CAE |
CAG |
122.0 |
120.0 |
CAF |
CAE |
HAE |
119.0 |
120.0 |
CAG |
CAE |
HAE |
119.0 |
120.0 |
CAE |
CAG |
HAG |
120.8 |
120.0 |
CAH |
CAF |
HAF |
120.8 |
120.0 |
CAI |
CAG |
HAG |
120.8 |
120.0 |
CAQ |
CAH |
HAH |
120.0 |
120.0 |
CAH |
CAQ |
CAI |
121.4 |
120.0 |
CAH |
CAQ |
CAN |
119.2 |
120.0 |
CAQ |
CAI |
HAI |
120.2 |
120.0 |
CAR |
CAJ |
HAJ |
119.7 |
120.1 |
CAL |
CAJ |
HAJ |
119.7 |
120.0 |
CAJ |
CAL |
CAS |
120.5 |
120.1 |
CAJ |
CAL |
HAL |
119.8 |
120.0 |
CAR |
CAK |
HAK |
120.6 |
120.0 |
CAM |
CAK |
HAK |
120.5 |
120.1 |
CAK |
CAM |
CAS |
121.1 |
120.1 |
CAK |
CAM |
HAM |
119.5 |
119.9 |
CAS |
CAL |
HAL |
119.8 |
119.9 |
CAL |
CAS |
CAM |
118.8 |
120.1 |
CAL |
CAS |
SAT |
119.0 |
120.0 |
CAS |
CAM |
HAM |
119.5 |
119.9 |
CAM |
CAS |
SAT |
122.2 |
119.9 |
CAP |
CAN |
CAQ |
113.2 |
109.5 |
CAP |
CAN |
HAN |
108.2 |
109.4 |
CAP |
CAN |
HANA |
108.2 |
109.4 |
CAN |
CAP |
NAO |
115.0 |
120.0 |
CAQ |
CAN |
HAN |
108.3 |
109.5 |
CAQ |
CAN |
HANA |
108.2 |
109.5 |
HAN |
CAN |
HANA |
110.7 |
109.5 |
CAP |
NAO |
CAR |
125.9 |
120.0 |
CAP |
NAO |
HNAO |
117.1 |
120.0 |
CAR |
NAO |
HNAO |
117.1 |
120.0 |
Torsion Angles for OYS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HNAA |
NAA |
SAT |
HNAB |
240.0 |
180.3 |
OAC |
SAT |
NAA |
OAD |
230.1 |
227.0 |
OAC |
SAT |
NAA |
CAS |
115.0 |
113.5 |
CAL |
CAS |
SAT |
NAA |
312.0 |
90.0 |
CAM |
CAS |
SAT |
NAA |
131.3 |
269.9 |
SAT |
NAA |
HNAA |
HNAB |
120.0 |
179.7 |
HNAA |
NAA |
SAT |
OAC |
180.0 |
113.5 |
HNAA |
NAA |
SAT |
OAD |
309.9 |
246.5 |
HNAA |
NAA |
SAT |
CAS |
65.0 |
0.0 |
SAT |
NAA |
HNAB |
HNAA |
239.9 |
180.3 |
HNAB |
NAA |
SAT |
OAC |
300.0 |
293.2 |
HNAB |
NAA |
SAT |
OAD |
69.9 |
66.2 |
HNAB |
NAA |
SAT |
CAS |
185.0 |
179.7 |
OAC |
SAT |
NAA |
HNAA |
180.0 |
113.5 |
OAC |
SAT |
NAA |
HNAB |
300.0 |
293.2 |
NAA |
SAT |
OAC |
OAD |
128.0 |
123.0 |
NAA |
SAT |
OAC |
CAS |
243.0 |
246.0 |
CAL |
CAS |
SAT |
OAC |
191.1 |
336.5 |
CAM |
CAS |
SAT |
OAC |
10.4 |
156.4 |
OAD |
SAT |
NAA |
HNAA |
309.9 |
246.5 |
OAD |
SAT |
NAA |
HNAB |
69.9 |
66.2 |
NAA |
SAT |
OAD |
OAC |
230.5 |
237.1 |
NAA |
SAT |
OAD |
CAS |
116.3 |
114.1 |
OAC |
SAT |
OAD |
CAS |
245.8 |
237.0 |
CAG |
CAE |
CAF |
HAE |
180.0 |
180.2 |
CAF |
CAE |
CAG |
HAG |
180.7 |
179.8 |
CAF |
CAE |
CAG |
HAE |
180.0 |
179.8 |
CAI |
CAG |
CAE |
HAG |
180.0 |
179.9 |
CAF |
CAE |
HAE |
CAG |
180.0 |
180.2 |
HAE |
CAE |
CAG |
HAG |
0.7 |
360.0 |
CAH |
CAF |
CAE |
HAE |
178.6 |
179.8 |
HAF |
CAF |
CAE |
CAG |
178.6 |
180.0 |
HAF |
CAF |
CAE |
HAE |
358.6 |
359.8 |
CAI |
CAG |
CAE |
HAE |
180.7 |
179.8 |
CAE |
CAG |
CAI |
HAG |
180.0 |
180.1 |
HAG |
CAG |
CAE |
HAE |
0.7 |
360.0 |
CAQ |
CAH |
CAF |
HAF |
179.6 |
180.1 |
CAH |
CAQ |
CAI |
HAI |
176.4 |
180.0 |
CAP |
CAN |
CAQ |
CAH |
243.8 |
89.9 |
CAH |
CAQ |
CAN |
HAN |
123.8 |
330.0 |
CAH |
CAQ |
CAN |
HANA |
3.8 |
209.9 |
HAH |
CAH |
CAF |
HAF |
359.6 |
360.0 |
HAH |
CAH |
CAQ |
CAI |
182.9 |
180.3 |
HAH |
CAH |
CAQ |
CAN |
358.9 |
0.1 |
CAQ |
CAI |
CAG |
HAG |
181.8 |
180.5 |
CAI |
CAQ |
CAH |
HAH |
182.9 |
180.3 |
CAH |
CAQ |
CAI |
CAN |
176.0 |
179.8 |
HAI |
CAI |
CAG |
HAG |
1.8 |
359.9 |
CAL |
CAJ |
CAR |
HAJ |
180.0 |
179.7 |
CAR |
CAJ |
CAL |
CAS |
359.3 |
0.3 |
CAR |
CAJ |
CAL |
HAL |
179.3 |
180.3 |
CAR |
CAJ |
CAL |
HAJ |
180.0 |
180.3 |
CAS |
CAL |
CAJ |
HAL |
180.0 |
180.1 |
CAJ |
CAL |
CAS |
CAM |
1.9 |
360.0 |
CAJ |
CAL |
CAS |
SAT |
181.2 |
179.9 |
HAJ |
CAJ |
CAL |
CAS |
179.3 |
180.0 |
HAJ |
CAJ |
CAL |
HAL |
359.3 |
360.0 |
CAK |
CAR |
CAJ |
HAJ |
179.4 |
180.2 |
CAM |
CAK |
CAR |
HAK |
180.0 |
179.2 |
CAR |
CAK |
CAM |
CAS |
0.4 |
0.8 |
CAR |
CAK |
CAM |
HAM |
180.4 |
180.8 |
CAR |
CAK |
CAM |
HAK |
180.0 |
180.8 |
CAL |
CAS |
CAM |
CAK |
358.3 |
359.4 |
CAS |
CAM |
CAK |
HAM |
180.0 |
180.0 |
CAK |
CAM |
CAS |
SAT |
179.0 |
179.5 |
HAK |
CAK |
CAM |
CAS |
180.4 |
180.1 |
HAK |
CAK |
CAM |
HAM |
0.4 |
0.0 |
NAA |
SAT |
CAS |
CAL |
312.0 |
90.0 |
OAC |
SAT |
CAS |
CAL |
191.1 |
336.5 |
CAS |
CAL |
CAJ |
HAJ |
179.3 |
180.0 |
CAJ |
CAL |
CAS |
HAL |
180.0 |
179.9 |
CAK |
CAM |
CAS |
CAL |
358.3 |
359.4 |
CAL |
CAS |
CAM |
HAM |
178.3 |
179.4 |
CAM |
CAS |
CAL |
SAT |
180.7 |
180.1 |
HAL |
CAL |
CAJ |
HAJ |
359.3 |
360.0 |
CAJ |
CAL |
HAL |
CAS |
180.0 |
180.1 |
HAL |
CAL |
CAS |
CAM |
181.9 |
180.1 |
HAL |
CAL |
CAS |
SAT |
1.2 |
360.0 |
NAA |
SAT |
CAS |
CAM |
131.3 |
269.9 |
OAC |
SAT |
CAS |
CAM |
10.4 |
156.4 |
CAS |
CAM |
CAK |
HAK |
180.4 |
180.1 |
CAK |
CAM |
CAS |
HAM |
180.0 |
180.0 |
CAM |
CAS |
CAL |
HAL |
181.9 |
180.1 |
CAL |
CAS |
CAM |
SAT |
179.3 |
179.9 |
HAM |
CAM |
CAK |
HAK |
0.4 |
0.0 |
CAK |
CAM |
HAM |
CAS |
180.0 |
180.0 |
HAM |
CAM |
CAS |
SAT |
359.0 |
359.5 |
CAH |
CAQ |
CAN |
CAP |
243.8 |
89.9 |
CAQ |
CAN |
CAP |
HAN |
240.0 |
240.0 |
CAQ |
CAN |
CAP |
HANA |
120.0 |
120.0 |
HAN |
CAN |
CAP |
HANA |
240.0 |
240.0 |
CAN |
CAP |
NAO |
CAR |
180.5 |
185.3 |
CAN |
CAP |
NAO |
HNAO |
0.6 |
5.4 |
CAN |
CAQ |
CAH |
HAH |
358.9 |
0.1 |
CAH |
CAQ |
CAN |
CAI |
183.9 |
180.2 |
CAN |
CAQ |
CAI |
HAI |
0.4 |
0.3 |
CAP |
CAN |
CAQ |
HAN |
120.0 |
119.9 |
CAP |
CAN |
CAQ |
HANA |
240.0 |
240.0 |
CAQ |
CAN |
CAP |
NAO |
258.9 |
180.0 |
HAN |
CAN |
CAQ |
HANA |
120.0 |
120.1 |
CAP |
CAN |
HAN |
CAQ |
236.9 |
240.0 |
CAP |
CAN |
HAN |
HANA |
118.5 |
119.9 |
HAN |
CAN |
CAP |
NAO |
18.9 |
300.0 |
CAQ |
CAN |
HAN |
HANA |
241.5 |
239.9 |
CAP |
CAN |
HANA |
CAQ |
123.1 |
120.0 |
CAP |
CAN |
HANA |
HAN |
241.5 |
240.1 |
HANA |
CAN |
CAP |
NAO |
138.9 |
59.9 |
CAQ |
CAN |
HANA |
HAN |
118.5 |
120.1 |
NAO |
CAP |
CAN |
CAQ |
258.9 |
180.0 |
NAO |
CAP |
CAN |
HAN |
18.9 |
300.0 |
NAO |
CAP |
CAN |
HANA |
138.9 |
59.9 |
CAR |
NAO |
CAP |
HNAO |
180.0 |
179.9 |
NAO |
CAR |
CAJ |
HAJ |
359.8 |
0.3 |
NAO |
CAR |
CAK |
HAK |
0.3 |
0.2 |
CAP |
NAO |
CAR |
HNAO |
180.0 |
180.1 |
CAP |
NAO |
HNAO |
CAR |
180.0 |
179.9 |
CAS |
SAT |
NAA |
HNAA |
65.0 |
0.0 |
CAS |
SAT |
NAA |
HNAB |
185.0 |
179.7 |
NAA |
SAT |
CAS |
OAC |
120.9 |
113.5 |
NAA |
SAT |
CAS |
OAD |
241.8 |
246.5 |
OAC |
SAT |
CAS |
OAD |
120.9 |
133.0 |
SAT |
CAS |
CAL |
HAL |
1.2 |
360.0 |
CAL |
CAS |
SAT |
CAM |
180.7 |
180.1 |
SAT |
CAS |
CAM |
HAM |
359.0 |
359.5 |