PDB Chemical Component OY0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OY0
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CAA |
HAA |
1.100 |
1.090 |
CAA |
HAAA |
1.100 |
1.090 |
CAB |
CAT |
1.490 |
1.530 |
CAB |
HAB |
1.100 |
1.090 |
CAB |
HABA |
1.100 |
1.090 |
CAB |
HABB |
1.100 |
1.090 |
CAC |
CAT |
1.494 |
1.530 |
CAC |
HAC |
1.100 |
1.090 |
CAC |
HACA |
1.100 |
1.089 |
CAC |
HACB |
1.100 |
1.090 |
CAD |
CAT |
1.502 |
1.530 |
CAD |
HAD |
1.100 |
1.090 |
CAD |
HADA |
1.100 |
1.090 |
CAD |
HADB |
1.100 |
1.090 |
NAE |
SAU |
1.652 |
1.656 |
NAE |
HNAE |
1.000 |
0.970 |
NAE |
HNAA |
1.000 |
0.970 |
OAG |
SAU |
1.475 |
1.420 |
CAI |
CAK |
1.391 |
1.381 |
CAI |
HAI |
1.080 |
1.080 |
CAJ |
CAL |
1.407 |
1.381 |
CAJ |
HAJ |
1.080 |
1.081 |
CAK |
CAR |
1.381 |
1.383 |
CAK |
HAK |
1.079 |
1.080 |
CAL |
CAR |
1.415 |
1.382 |
CAL |
HAL |
1.080 |
1.080 |
CAM |
CAA |
1.489 |
1.531 |
CAM |
HAM |
1.100 |
1.090 |
CAN |
CAM |
1.494 |
1.530 |
CAN |
HAN |
1.100 |
1.090 |
CAN |
HANA |
1.100 |
1.090 |
NAO |
CAQ |
1.455 |
1.399 |
NAO |
HNAO |
1.000 |
0.970 |
CAP |
OAF |
1.218 |
1.213 |
CAP |
NAO |
1.446 |
1.348 |
CAQ |
CAI |
1.386 |
1.389 |
CAQ |
CAJ |
1.403 |
1.388 |
CAR |
SAU |
1.787 |
1.762 |
CAS |
CAN |
1.489 |
1.529 |
CAS |
CAP |
1.505 |
1.506 |
CAS |
HAS |
1.100 |
1.091 |
CAT |
CAS |
1.516 |
1.530 |
SAU |
OAH |
1.472 |
1.422 |
CAA |
H23 |
1.100 |
1.090 |
CAM |
H24 |
1.100 |
1.090 |
Bond Angles for OY0
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
HAA |
CAA |
HAAA |
109.5 |
109.5 |
CAM |
CAA |
HAA |
109.5 |
109.4 |
HAA |
CAA |
H23 |
109.4 |
109.5 |
CAM |
CAA |
HAAA |
109.5 |
109.5 |
HAAA |
CAA |
H23 |
109.5 |
109.5 |
CAT |
CAB |
HAB |
109.5 |
109.5 |
CAT |
CAB |
HABA |
109.5 |
109.5 |
CAT |
CAB |
HABB |
109.5 |
109.5 |
CAB |
CAT |
CAC |
107.4 |
109.5 |
CAB |
CAT |
CAD |
109.6 |
109.5 |
CAB |
CAT |
CAS |
111.6 |
109.4 |
HAB |
CAB |
HABA |
109.5 |
109.5 |
HAB |
CAB |
HABB |
109.5 |
109.5 |
HABA |
CAB |
HABB |
109.5 |
109.5 |
CAT |
CAC |
HAC |
109.5 |
109.5 |
CAT |
CAC |
HACA |
109.5 |
109.5 |
CAT |
CAC |
HACB |
109.5 |
109.4 |
CAC |
CAT |
CAD |
108.3 |
109.5 |
CAC |
CAT |
CAS |
109.2 |
109.5 |
HAC |
CAC |
HACA |
109.5 |
109.5 |
HAC |
CAC |
HACB |
109.4 |
109.4 |
HACA |
CAC |
HACB |
109.4 |
109.5 |
CAT |
CAD |
HAD |
109.5 |
109.5 |
CAT |
CAD |
HADA |
109.5 |
109.4 |
CAT |
CAD |
HADB |
109.4 |
109.5 |
CAD |
CAT |
CAS |
110.6 |
109.5 |
HAD |
CAD |
HADA |
109.4 |
109.5 |
HAD |
CAD |
HADB |
109.5 |
109.5 |
HADA |
CAD |
HADB |
109.5 |
109.5 |
SAU |
NAE |
HNAE |
109.5 |
120.0 |
SAU |
NAE |
HNAA |
109.5 |
120.0 |
NAE |
SAU |
OAG |
113.5 |
106.4 |
NAE |
SAU |
CAR |
108.8 |
107.2 |
NAE |
SAU |
OAH |
111.6 |
106.4 |
HNAE |
NAE |
HNAA |
109.5 |
120.0 |
OAG |
SAU |
CAR |
105.9 |
106.4 |
OAG |
SAU |
OAH |
111.8 |
123.2 |
CAK |
CAI |
HAI |
119.1 |
120.0 |
CAI |
CAK |
CAR |
121.2 |
120.0 |
CAI |
CAK |
HAK |
119.4 |
120.0 |
CAQ |
CAI |
HAI |
119.1 |
120.1 |
CAL |
CAJ |
HAJ |
119.7 |
120.0 |
CAJ |
CAL |
CAR |
120.6 |
120.1 |
CAJ |
CAL |
HAL |
119.7 |
120.0 |
CAQ |
CAJ |
HAJ |
119.8 |
120.0 |
CAR |
CAK |
HAK |
119.4 |
120.0 |
CAK |
CAR |
CAL |
117.9 |
120.1 |
CAK |
CAR |
SAU |
117.2 |
119.9 |
CAR |
CAL |
HAL |
119.7 |
120.0 |
CAL |
CAR |
SAU |
124.9 |
120.0 |
CAM |
CAA |
H23 |
109.5 |
109.5 |
CAN |
CAM |
HAM |
107.1 |
109.4 |
HAM |
CAM |
H24 |
111.7 |
109.4 |
CAN |
CAM |
H24 |
107.1 |
109.5 |
HAN |
CAN |
HANA |
111.8 |
109.4 |
CAS |
CAN |
HAN |
107.0 |
109.5 |
CAS |
CAN |
HANA |
107.0 |
109.6 |
CAQ |
NAO |
HNAO |
118.6 |
120.0 |
CAP |
NAO |
CAQ |
122.9 |
120.0 |
CAP |
NAO |
HNAO |
118.6 |
120.0 |
CAT |
CAS |
HAS |
103.0 |
109.4 |
Torsion Angles for OY0
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAM |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
HAAA |
CAA |
HAA |
H23 |
120.0 |
120.1 |
CAM |
CAA |
HAA |
H23 |
240.0 |
240.0 |
CAM |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
HAA |
CAA |
HAAA |
H23 |
240.0 |
239.9 |
CAM |
CAA |
HAAA |
H23 |
120.0 |
120.0 |
HAB |
CAB |
CAT |
HABA |
240.0 |
240.0 |
HAB |
CAB |
CAT |
HABB |
120.0 |
120.0 |
HABA |
CAB |
CAT |
HABB |
240.0 |
240.0 |
CAB |
CAT |
CAC |
HAC |
180.0 |
51.3 |
CAB |
CAT |
CAC |
HACA |
300.0 |
171.4 |
CAB |
CAT |
CAC |
HACB |
60.0 |
291.4 |
CAC |
CAT |
CAB |
CAD |
242.6 |
240.0 |
CAC |
CAT |
CAB |
CAS |
119.6 |
120.0 |
CAB |
CAT |
CAD |
HAD |
180.0 |
68.7 |
CAB |
CAT |
CAD |
HADA |
300.0 |
188.7 |
CAB |
CAT |
CAD |
HADB |
60.0 |
308.7 |
CAD |
CAT |
CAB |
CAS |
237.1 |
240.0 |
CAB |
CAT |
CAS |
HAS |
140.3 |
157.8 |
CAT |
CAB |
HAB |
HABA |
120.0 |
120.0 |
CAT |
CAB |
HAB |
HABB |
240.0 |
240.0 |
HAB |
CAB |
CAT |
CAC |
180.0 |
60.0 |
HAB |
CAB |
CAT |
CAD |
297.4 |
180.0 |
HAB |
CAB |
CAT |
CAS |
60.4 |
300.0 |
HABA |
CAB |
HAB |
HABB |
120.0 |
120.0 |
CAT |
CAB |
HABA |
HAB |
240.0 |
240.0 |
CAT |
CAB |
HABA |
HABB |
120.0 |
120.0 |
HABA |
CAB |
CAT |
CAC |
300.0 |
180.0 |
HABA |
CAB |
CAT |
CAD |
57.4 |
300.0 |
HABA |
CAB |
CAT |
CAS |
180.3 |
60.0 |
HAB |
CAB |
HABA |
HABB |
240.0 |
240.0 |
CAT |
CAB |
HABB |
HAB |
120.0 |
120.0 |
CAT |
CAB |
HABB |
HABA |
240.0 |
240.0 |
HABB |
CAB |
CAT |
CAC |
60.0 |
300.0 |
HABB |
CAB |
CAT |
CAD |
177.4 |
60.0 |
HABB |
CAB |
CAT |
CAS |
300.4 |
180.0 |
HAB |
CAB |
HABB |
HABA |
120.0 |
120.0 |
CAC |
CAT |
CAB |
HAB |
180.0 |
60.0 |
CAC |
CAT |
CAB |
HABA |
300.0 |
180.0 |
CAC |
CAT |
CAB |
HABB |
60.0 |
300.0 |
CAB |
CAT |
CAC |
CAD |
118.3 |
120.0 |
CAB |
CAT |
CAC |
CAS |
238.8 |
240.0 |
HAC |
CAC |
CAT |
HACA |
240.0 |
239.9 |
HAC |
CAC |
CAT |
HACB |
120.0 |
119.9 |
HACA |
CAC |
CAT |
HACB |
240.0 |
240.0 |
CAC |
CAT |
CAD |
HAD |
296.8 |
188.7 |
CAC |
CAT |
CAD |
HADA |
56.8 |
308.7 |
CAC |
CAT |
CAD |
HADB |
176.8 |
68.7 |
CAD |
CAT |
CAC |
CAS |
120.6 |
120.0 |
CAC |
CAT |
CAS |
HAS |
21.7 |
37.8 |
CAT |
CAC |
HAC |
HACA |
120.0 |
120.1 |
CAT |
CAC |
HAC |
HACB |
240.0 |
240.1 |
HAC |
CAC |
CAT |
CAD |
61.7 |
291.3 |
HAC |
CAC |
CAT |
CAS |
301.2 |
171.3 |
HACA |
CAC |
HAC |
HACB |
120.0 |
120.0 |
CAT |
CAC |
HACA |
HAC |
239.9 |
239.9 |
CAT |
CAC |
HACA |
HACB |
120.0 |
120.0 |
HACA |
CAC |
CAT |
CAD |
181.8 |
51.4 |
HACA |
CAC |
CAT |
CAS |
61.2 |
291.4 |
HAC |
CAC |
HACA |
HACB |
240.0 |
240.0 |
CAT |
CAC |
HACB |
HAC |
120.0 |
119.9 |
CAT |
CAC |
HACB |
HACA |
240.0 |
240.0 |
HACB |
CAC |
CAT |
CAD |
301.7 |
171.4 |
HACB |
CAC |
CAT |
CAS |
181.2 |
51.4 |
HAC |
CAC |
HACB |
HACA |
120.0 |
120.0 |
CAD |
CAT |
CAB |
HAB |
297.4 |
180.0 |
CAD |
CAT |
CAB |
HABA |
57.4 |
300.0 |
CAD |
CAT |
CAB |
HABB |
177.4 |
60.0 |
CAB |
CAT |
CAD |
CAC |
243.2 |
240.0 |
CAB |
CAT |
CAD |
CAS |
123.5 |
120.0 |
CAD |
CAT |
CAC |
HAC |
61.7 |
291.3 |
CAD |
CAT |
CAC |
HACA |
181.8 |
51.4 |
CAD |
CAT |
CAC |
HACB |
301.7 |
171.4 |
CAC |
CAT |
CAD |
CAS |
240.3 |
240.0 |
HAD |
CAD |
CAT |
HADA |
240.0 |
240.0 |
HAD |
CAD |
CAT |
HADB |
120.0 |
120.0 |
HADA |
CAD |
CAT |
HADB |
240.0 |
240.0 |
CAD |
CAT |
CAS |
HAS |
262.6 |
277.7 |
CAT |
CAD |
HAD |
HADA |
120.0 |
119.9 |
CAT |
CAD |
HAD |
HADB |
240.0 |
240.0 |
HAD |
CAD |
CAT |
CAS |
56.5 |
308.8 |
HADA |
CAD |
HAD |
HADB |
120.0 |
120.1 |
CAT |
CAD |
HADA |
HAD |
240.0 |
240.0 |
CAT |
CAD |
HADA |
HADB |
120.0 |
120.0 |
HADA |
CAD |
CAT |
CAS |
176.5 |
68.8 |
HAD |
CAD |
HADA |
HADB |
240.0 |
239.9 |
CAT |
CAD |
HADB |
HAD |
120.0 |
120.0 |
CAT |
CAD |
HADB |
HADA |
240.0 |
240.1 |
HADB |
CAD |
CAT |
CAS |
296.5 |
188.7 |
HAD |
CAD |
HADB |
HADA |
120.0 |
120.1 |
HNAE |
NAE |
SAU |
HNAA |
240.0 |
180.0 |
OAG |
SAU |
NAE |
CAR |
117.6 |
113.6 |
OAG |
SAU |
NAE |
OAH |
232.6 |
227.1 |
CAK |
CAR |
SAU |
NAE |
311.1 |
90.0 |
CAL |
CAR |
SAU |
NAE |
131.5 |
270.0 |
SAU |
NAE |
HNAE |
HNAA |
120.0 |
180.0 |
HNAE |
NAE |
SAU |
OAG |
180.0 |
353.6 |
HNAE |
NAE |
SAU |
CAR |
62.3 |
240.0 |
HNAE |
NAE |
SAU |
OAH |
307.4 |
126.5 |
SAU |
NAE |
HNAA |
HNAE |
239.9 |
180.0 |
HNAA |
NAE |
SAU |
OAG |
300.0 |
173.6 |
HNAA |
NAE |
SAU |
CAR |
182.4 |
60.0 |
HNAA |
NAE |
SAU |
OAH |
67.4 |
306.5 |
OAG |
SAU |
NAE |
HNAE |
180.0 |
353.6 |
OAG |
SAU |
NAE |
HNAA |
300.0 |
173.6 |
NAE |
SAU |
OAG |
CAR |
240.7 |
245.9 |
NAE |
SAU |
OAG |
OAH |
127.3 |
122.9 |
CAK |
CAR |
SAU |
OAG |
188.8 |
336.4 |
CAL |
CAR |
SAU |
OAG |
9.2 |
156.4 |
CAQ |
CAI |
CAK |
HAI |
180.0 |
180.3 |
CAR |
CAK |
CAI |
HAK |
180.0 |
180.1 |
CAI |
CAK |
CAR |
CAL |
358.3 |
359.9 |
CAI |
CAK |
CAR |
SAU |
178.6 |
179.9 |
HAI |
CAI |
CAK |
CAR |
183.4 |
180.0 |
HAI |
CAI |
CAK |
HAK |
3.4 |
359.9 |
CAQ |
CAJ |
CAL |
HAJ |
180.0 |
180.7 |
CAK |
CAR |
CAL |
CAJ |
359.9 |
359.5 |
CAR |
CAL |
CAJ |
HAL |
180.0 |
180.0 |
CAJ |
CAL |
CAR |
SAU |
179.5 |
179.5 |
HAJ |
CAJ |
CAL |
CAR |
180.4 |
180.0 |
HAJ |
CAJ |
CAL |
HAL |
0.4 |
0.0 |
NAE |
SAU |
CAR |
CAK |
311.1 |
90.0 |
OAG |
SAU |
CAR |
CAK |
188.8 |
336.4 |
CAR |
CAK |
CAI |
HAI |
183.4 |
180.0 |
CAI |
CAK |
CAR |
HAK |
180.0 |
179.9 |
CAJ |
CAL |
CAR |
CAK |
359.9 |
359.5 |
CAK |
CAR |
CAL |
HAL |
179.9 |
179.5 |
CAL |
CAR |
CAK |
SAU |
179.6 |
180.0 |
HAK |
CAK |
CAI |
HAI |
3.4 |
359.9 |
CAI |
CAK |
HAK |
CAR |
180.0 |
180.1 |
HAK |
CAK |
CAR |
CAL |
178.3 |
180.0 |
HAK |
CAK |
CAR |
SAU |
358.6 |
0.0 |
NAE |
SAU |
CAR |
CAL |
131.5 |
270.0 |
OAG |
SAU |
CAR |
CAL |
9.2 |
156.4 |
CAR |
CAL |
CAJ |
HAJ |
180.4 |
180.0 |
CAJ |
CAL |
CAR |
HAL |
180.0 |
180.0 |
CAL |
CAR |
CAK |
HAK |
178.3 |
180.0 |
CAK |
CAR |
CAL |
SAU |
180.4 |
180.0 |
HAL |
CAL |
CAJ |
HAJ |
0.4 |
0.0 |
CAJ |
CAL |
HAL |
CAR |
180.0 |
180.0 |
HAL |
CAL |
CAR |
SAU |
359.5 |
359.5 |
HAA |
CAA |
CAM |
HAAA |
240.0 |
240.0 |
HAA |
CAA |
CAM |
H23 |
120.0 |
120.0 |
HAAA |
CAA |
CAM |
H23 |
240.0 |
240.0 |
HAM |
CAM |
CAA |
HAA |
300.0 |
300.0 |
HAM |
CAM |
CAA |
HAAA |
60.0 |
60.0 |
HAM |
CAM |
CAA |
H23 |
180.0 |
180.0 |
CAN |
CAM |
HAM |
H24 |
243.0 |
240.0 |
CAN |
CAM |
CAA |
HAA |
180.0 |
180.0 |
CAN |
CAM |
CAA |
HAAA |
300.0 |
300.0 |
CAN |
CAM |
CAA |
H23 |
60.0 |
60.0 |
HAM |
CAM |
CAN |
H24 |
120.0 |
120.0 |
HAN |
CAN |
CAM |
HAM |
218.1 |
173.4 |
HAN |
CAN |
CAM |
H24 |
98.1 |
53.4 |
CAS |
CAN |
HAN |
HANA |
243.1 |
239.9 |
HANA |
CAN |
CAM |
HAM |
338.1 |
293.3 |
HANA |
CAN |
CAM |
H24 |
218.1 |
173.3 |
CAS |
CAN |
HANA |
HAN |
116.9 |
120.0 |
NAO |
CAQ |
CAI |
HAI |
359.6 |
0.3 |
NAO |
CAQ |
CAJ |
HAJ |
358.2 |
0.2 |
CAP |
NAO |
CAQ |
HNAO |
180.0 |
180.1 |
CAP |
NAO |
HNAO |
CAQ |
180.0 |
179.9 |
CAQ |
NAO |
CAP |
HNAO |
180.0 |
179.9 |
CAK |
CAI |
CAQ |
HAI |
180.0 |
179.7 |
CAQ |
CAI |
CAK |
CAR |
3.3 |
0.4 |
CAQ |
CAI |
CAK |
HAK |
183.3 |
180.3 |
CAJ |
CAQ |
CAI |
HAI |
177.0 |
180.3 |
CAL |
CAJ |
CAQ |
HAJ |
180.0 |
179.3 |
CAQ |
CAJ |
CAL |
CAR |
0.4 |
0.8 |
CAQ |
CAJ |
CAL |
HAL |
180.4 |
180.8 |
CAR |
SAU |
NAE |
HNAE |
62.3 |
240.0 |
CAR |
SAU |
NAE |
HNAA |
182.4 |
60.0 |
NAE |
SAU |
CAR |
OAG |
122.3 |
113.6 |
NAE |
SAU |
CAR |
OAH |
240.6 |
246.5 |
OAG |
SAU |
CAR |
OAH |
118.3 |
132.9 |
SAU |
CAR |
CAK |
HAK |
358.6 |
0.0 |
CAK |
CAR |
SAU |
CAL |
179.6 |
180.0 |
SAU |
CAR |
CAL |
HAL |
359.5 |
359.5 |
CAB |
CAT |
CAS |
CAN |
22.3 |
37.8 |
CAC |
CAT |
CAS |
CAN |
263.8 |
277.8 |
CAD |
CAT |
CAS |
CAN |
144.6 |
157.8 |
CAS |
CAN |
CAM |
HAM |
98.1 |
53.4 |
CAS |
CAN |
CAM |
H24 |
338.1 |
293.4 |
HAN |
CAN |
CAS |
HANA |
120.0 |
120.0 |
CAB |
CAT |
CAS |
CAP |
257.6 |
277.7 |
CAC |
CAT |
CAS |
CAP |
139.1 |
157.8 |
CAD |
CAT |
CAS |
CAP |
20.0 |
37.7 |
CAP |
CAS |
CAN |
HAN |
192.7 |
65.5 |
CAP |
CAS |
CAN |
HANA |
72.6 |
305.5 |
CAS |
CAP |
NAO |
HNAO |
1.5 |
5.8 |
HAS |
CAS |
CAN |
HAN |
310.8 |
185.5 |
HAS |
CAS |
CAN |
HANA |
190.7 |
65.5 |
CAS |
CAT |
CAB |
HAB |
60.4 |
300.0 |
CAS |
CAT |
CAB |
HABA |
180.3 |
60.0 |
CAS |
CAT |
CAB |
HABB |
300.4 |
180.0 |
CAB |
CAT |
CAS |
CAC |
118.5 |
120.0 |
CAB |
CAT |
CAS |
CAD |
237.6 |
240.0 |
CAS |
CAT |
CAC |
HAC |
301.2 |
171.3 |
CAS |
CAT |
CAC |
HACA |
61.2 |
291.4 |
CAS |
CAT |
CAC |
HACB |
181.2 |
51.4 |
CAC |
CAT |
CAS |
CAD |
119.1 |
120.0 |
CAS |
CAT |
CAD |
HAD |
56.5 |
308.8 |
CAS |
CAT |
CAD |
HADA |
176.5 |
68.8 |
CAS |
CAT |
CAD |
HADB |
296.5 |
188.7 |
CAT |
CAS |
CAN |
HAN |
65.0 |
305.5 |
CAT |
CAS |
CAN |
HANA |
304.9 |
185.5 |
OAH |
SAU |
NAE |
HNAE |
307.4 |
126.5 |
OAH |
SAU |
NAE |
HNAA |
67.4 |
306.5 |
NAE |
SAU |
OAH |
OAG |
231.7 |
237.0 |
NAE |
SAU |
OAH |
CAR |
117.5 |
114.0 |
OAG |
SAU |
OAH |
CAR |
245.8 |
237.0 |
HAA |
CAA |
H23 |
HAAA |
120.0 |
120.1 |
CAM |
CAA |
H23 |
HAA |
120.0 |
120.0 |
CAM |
CAA |
H23 |
HAAA |
240.0 |
240.0 |
H24 |
CAM |
CAA |
HAA |
60.0 |
60.0 |
H24 |
CAM |
CAA |
HAAA |
180.0 |
180.0 |
H24 |
CAM |
CAA |
H23 |
300.0 |
300.0 |
CAN |
CAM |
H24 |
HAM |
117.0 |
120.0 |