PDB Chemical Component OTR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OTR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.392	1.395
C2	C1	1.393	1.395
C2	H2	1.080	1.087
C3	C4	1.391	1.395
C3	H3	1.080	1.087
C4	C5	1.392	1.395
C4	O4	1.360	1.361
O4	HO4	0.950	0.971
C5	C6	1.392	1.395
C5	H5	1.080	1.087
C6	C1	1.393	1.394
C6	H6	1.080	1.087
C1	C7	1.531	1.492
C7	C8	1.530	1.538
C7	O7	1.430	1.434
C7	H7	1.100	1.104
O7	HO7	0.950	0.967
C8	N8	1.470	1.445
C8	H81	1.100	1.096
C8	H82	1.100	1.095
N8	HN81	1.000	1.004
N8	HN82	1.000	1.004

Bond Angles for OTR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	120.2	120.0
C3	C2	H2	119.9	119.5
C2	C3	C4	119.9	120.0
C2	C3	H3	120.1	119.6
C1	C2	H2	119.9	120.6
C2	C1	C6	119.7	120.0
C2	C1	C7	118.1	120.0
C4	C3	H3	120.1	120.3
C3	C4	C5	120.2	120.0
C3	C4	O4	119.5	120.0
O4	C4	C5	120.3	120.0
C4	C5	C6	119.8	120.0
C4	C5	H5	120.1	120.3
C4	O4	HO4	109.5	110.3
C6	C5	H5	120.1	119.7
C5	C6	C1	120.2	120.0
C5	C6	H6	119.9	119.5
C1	C6	H6	119.9	120.5
C6	C1	C7	122.2	120.0
C1	C7	C8	112.6	112.5
C1	C7	O7	109.0	109.2
C1	C7	H7	107.5	110.7
O7	C7	C8	109.2	109.0
C8	C7	H7	107.4	109.3
C7	C8	N8	109.0	110.5
C7	C8	H81	109.6	110.4
C7	C8	H82	109.7	110.9
O7	C7	H7	111.1	105.9
C7	O7	HO7	109.5	106.0
N8	C8	H81	109.6	108.5
N8	C8	H82	109.7	108.4
C8	N8	HN81	109.5	118.8
C8	N8	HN82	109.5	118.8
H81	C8	H82	109.1	108.0
HN81	N8	HN82	109.5	121.0

Torsion Angles for OTR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C3	H2	180.0	180.0
C3	C2	C1	C6	0.2	360.0
C3	C2	C1	C7	181.2	180.0
C4	C3	C2	H3	180.0	179.9
C2	C3	C4	C5	359.8	360.0
C2	C3	C4	O4	178.7	180.1
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	359.9	0.0
C1	C2	C3	H3	179.9	180.1
C5	C6	C1	C2	359.8	0.0
C2	C1	C6	H6	179.9	180.1
C6	C1	C2	C7	179.1	180.0
C2	C1	C7	C8	189.5	57.4
C2	C1	C7	O7	68.1	296.2
C2	C1	C7	H7	307.6	180.0
C3	C2	H2	C1	180.0	180.0
H2	C2	C3	C4	179.9	180.0
H2	C2	C3	H3	359.9	0.0
H2	C2	C1	C6	180.3	180.0
H2	C2	C1	C7	1.2	0.0
C4	C3	C2	C1	359.9	0.0
C4	C3	C2	H2	179.9	180.0
C2	C3	C4	H3	180.0	180.1
O4	C4	C3	C5	178.9	180.1
C3	C4	C5	C6	0.3	0.0
C3	C4	C5	H5	180.3	180.0
C3	C4	O4	HO4	150.6	167.7
H3	C3	C2	C1	179.9	180.1
H3	C3	C2	H2	359.9	0.0
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C5	179.8	179.9
H3	C3	C4	O4	358.6	0.0
C5	C4	C3	H3	179.8	179.9
C3	C4	C5	O4	178.8	180.1
C5	C4	O4	HO4	329.5	347.9
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C1	359.9	360.0
C4	C5	C6	H6	179.9	179.9
O4	C4	C3	H3	358.6	0.0
C3	C4	O4	C5	181.1	179.9
O4	C4	C5	C6	181.4	179.9
O4	C4	C5	H5	1.4	359.9
HO4	O4	C4	C5	329.5	347.9
C2	C1	C6	C5	359.8	0.0
C4	C5	C6	H5	180.0	180.0
C1	C6	C5	H6	180.0	180.0
C5	C6	C1	C7	178.9	180.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C1	179.9	180.0
H5	C5	C6	H6	359.9	360.0
C6	C1	C2	H2	180.3	180.0
C2	C1	C6	C7	181.0	180.0
C1	C6	C5	H5	179.9	180.0
C5	C6	C1	H6	180.0	180.0
C6	C1	C7	C8	10.4	237.4
C6	C1	C7	O7	249.1	116.2
C6	C1	C7	H7	128.5	360.0
H6	C6	C5	H5	359.9	360.0
C5	C6	H6	C1	180.0	180.0
H6	C6	C1	C7	358.9	0.1
C7	C1	C2	H2	1.2	0.0
C2	C1	C7	C6	179.1	180.0
C7	C1	C6	H6	358.9	0.1
O7	C7	C1	C8	238.6	238.8
C8	C7	C1	H7	241.9	237.4
C1	C7	C8	N8	178.7	180.0
C1	C7	C8	H81	298.7	60.0
C1	C7	C8	H82	58.5	300.3
O7	C7	C1	H7	120.5	116.2
C1	C7	O7	HO7	285.2	207.3
C1	C7	C8	O7	238.7	238.8
C1	C7	C8	H7	118.2	123.4
O7	C7	C8	H7	239.5	244.6
C8	C7	O7	HO7	161.8	84.1
N8	C8	C7	H81	240.0	120.0
N8	C8	C7	H82	120.2	239.7
C7	C8	N8	HN81	22.5	212.5
C7	C8	N8	HN82	142.5	45.8
H81	C8	C7	H82	240.2	119.7
C1	C7	O7	C8	123.4	123.2
C1	C7	O7	H7	241.6	240.8
C8	C7	O7	H7	118.2	117.5
O7	C7	C8	N8	299.9	301.3
O7	C7	C8	H81	59.9	181.2
O7	C7	C8	H82	179.8	61.6
C1	C7	H7	C8	238.6	235.6
C1	C7	H7	O7	119.2	118.2
O7	C7	H7	C8	119.3	117.4
H7	C7	C8	N8	60.5	56.6
H7	C7	C8	H81	180.5	296.6
H7	C7	C8	H82	300.3	177.0
H7	C7	O7	HO7	43.6	326.6
HO7	O7	C7	C8	161.8	84.1
HO7	O7	C7	H7	43.6	326.6
N8	C8	C7	H7	60.5	56.6
C7	C8	N8	H81	120.0	238.9
C7	C8	N8	H82	239.8	121.8
H81	C8	N8	H82	119.8	242.9
HN81	N8	C8	HN82	240.0	166.6
H81	C8	C7	H7	180.5	296.6
C7	C8	H81	N8	240.4	121.2
C7	C8	H81	H82	120.2	238.6
N8	C8	H81	H82	239.8	117.4
H81	C8	N8	HN81	262.5	333.6
H81	C8	N8	HN82	22.5	167.0
H82	C8	C7	H7	300.3	177.0
C7	C8	H82	N8	119.7	238.5
C7	C8	H82	H81	239.9	121.1
N8	C8	H82	H81	120.1	242.6
H82	C8	N8	HN81	142.7	90.7
H82	C8	N8	HN82	262.7	284.0
HN81	N8	C8	H81	262.5	333.6
HN81	N8	C8	H82	142.7	90.7
C8	N8	HN81	HN82	120.0	193.7
HN82	N8	C8	H81	22.5	167.0
HN82	N8	C8	H82	262.7	284.0
C8	N8	HN82	HN81	240.0	166.3