PDB Chemical Component OSU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OSU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1' C1' 1.420 1.429
C8N C7N 1.535 1.530
C1' C2' 1.544 1.530
C7N C6N 1.500 1.531
C6N C5N 1.543 1.530
O2 C2 1.434 1.429
C5N C4N 1.532 1.530
C2N C3N 1.543 1.530
C2N C1N 1.507 1.507
O2' C2' 1.446 1.437
O2' C5' 1.441 1.447
C4N C3N 1.532 1.530
C1 C2 1.562 1.531
C1 O1 1.459 1.429
C1 O5 1.496 1.429
C2' O1 1.481 1.429
C2' C3' 1.578 1.541
C2 C3 1.550 1.532
O6' C1N 1.383 1.342
O6' C6' 1.456 1.452
C1N O1N 1.212 1.208
O5 C5 1.493 1.429
C5' C6' 1.509 1.530
C5' C4' 1.507 1.550
C3' O3' 1.421 1.430
C3' C4' 1.505 1.548
C3 O3 1.426 1.429
C3 C4 1.513 1.532
C4' O4' 1.441 1.429
O6 C6 1.438 1.429
C5 C4 1.558 1.531
C5 C6 1.510 1.530
C4 O4 1.463 1.429
C1 H1 1.100 1.090
C2 H2 1.100 1.090
C3 H3 1.100 1.091
C4 H4 1.100 1.090
C5 H5 1.100 1.090
C6 H61 1.100 1.090
C6 H62 1.100 1.090
O2 HO2 0.950 0.967
O3 HO3 0.950 0.966
O4 HO4 0.950 0.967
O6 HO6 0.950 0.967
C1' H1'1 1.100 1.090
C1' H1'2 1.100 1.090
C3' H3' 1.100 1.090
C4' H4' 1.100 1.090
C5' H5' 1.100 1.090
C6' H6'1 1.100 1.090
C6' H6'2 1.100 1.090
O1' H1' 0.950 0.967
O3' H6 0.950 0.967
O4' H7 0.950 0.967
C2N H2N1 1.100 1.090
C2N H2N2 1.100 1.091
C3N H3N1 1.100 1.090
C3N H3N2 1.100 1.091
C4N H4N1 1.100 1.090
C4N H4N2 1.100 1.090
C5N H5N1 1.100 1.090
C5N H5N2 1.100 1.090
C6N H6N1 1.100 1.091
C6N H6N2 1.100 1.090
C7N H7N1 1.100 1.090
C7N H7N2 1.100 1.090
C8N H8N1 1.100 1.090
C8N H8N2 1.100 1.090
C8N H8N3 1.100 1.090

Bond Angles for OSU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1' C1' H1'1 109.1 109.5
O1' C1' H1'2 109.1 109.4
C8N C7N H7N1 108.6 109.5
C8N C7N H7N2 108.6 109.5
C1' C2' C3' 115.5 109.8
C2' C1' H1'1 109.0 109.5
C2' C1' H1'2 109.1 109.5
C7N C6N H6N1 108.9 109.5
C7N C6N H6N2 108.9 109.5
C6N C5N H5N1 108.2 109.4
C6N C5N H5N2 108.2 109.5
O2 C2 H2 110.2 109.6
C5N C4N H4N1 109.9 109.5
C5N C4N H4N2 109.9 109.5
C3N C2N H2N1 110.7 109.5
C3N C2N H2N2 110.6 109.4
C2N C3N H3N1 107.1 109.5
C2N C3N H3N2 107.1 109.4
C2N C1N O1N 122.3 120.0
O2' C5' H5' 105.3 110.8
C4N C3N H3N1 107.1 109.5
C4N C3N H3N2 107.1 109.4
C2 C1 O1 109.0 109.5
C2 C1 O5 108.0 109.4
C1 C2 C3 109.7 109.2
C2 C1 H1 109.1 109.5
C1 C2 H2 108.5 109.5
O5 C1 O1 110.3 109.5
O1 C1 H1 110.5 109.5
C1 O5 C5 114.0 114.1
O5 C1 H1 110.0 109.5
C2' C3' O3' 112.8 110.5
C2' C3' C4' 102.1 104.2
C2' C3' H3' 109.3 110.5
C2 C3 O3 108.6 109.6
C2 C3 C4 108.9 109.0
C3 C2 H2 108.7 109.5
C2 C3 H3 108.8 109.5
O6' C1N O1N 120.2 120.0
O6' C6' H6'1 105.9 109.5
O6' C6' H6'2 105.8 109.5
O5 C5 H5 109.5 109.5
C6' C5' H5' 104.6 110.6
C5' C6' H6'1 105.9 109.5
C5' C6' H6'2 105.9 109.5
C5' C4' O4' 110.4 110.9
C5' C4' H4' 112.3 111.0
C4' C3' O3' 110.4 110.5
O3' C3' H3' 111.6 110.4
C3' O3' H6 109.5 114.0
C3' C4' O4' 109.3 110.9
C4' C3' H3' 110.3 110.6
C3' C4' H4' 112.3 110.9
C4 C3 O3 110.7 109.6
O3 C3 H3 110.5 109.6
C3 O3 HO3 109.5 114.0
C3 C4 O4 109.3 109.5
C4 C3 H3 109.3 109.5
C3 C4 H4 109.1 109.5
O4' C4' H4' 113.4 110.8
C4' O4' H7 109.5 114.0
O6 C6 H61 109.2 109.5
O6 C6 H62 109.2 109.5
C5 C4 O4 109.5 109.5
C5 C4 H4 108.6 109.5
C6 C5 H5 109.3 109.5
C5 C6 H61 109.2 109.5
C5 C6 H62 109.2 109.4
O4 C4 H4 109.8 109.5
C4 O4 HO4 109.5 114.0
H61 C6 H62 109.5 109.5
H1'1 C1' H1'2 109.5 109.5
H6'1 C6' H6'2 109.5 109.4
H2N1 C2N H2N2 109.5 109.5
H3N1 C3N H3N2 109.5 109.5
H4N1 C4N H4N2 109.5 109.4
H5N1 C5N H5N2 109.5 109.5
H6N1 C6N H6N2 109.5 109.5
H7N1 C7N H7N2 109.4 109.5
H8N1 C8N H8N2 109.5 109.5
H8N1 C8N H8N3 109.5 109.5
H8N2 C8N H8N3 109.5 109.5

Torsion Angles for OSU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' C1' O1' H1'1 239.8 120.0
C2' C1' O1' H1'2 120.3 240.0
H1'1 C1' O1' H1'2 240.5 120.0
C8N C7N C6N H6N1 300.4 60.0
C8N C7N C6N H6N2 59.7 300.0
H7N1 C7N C8N H7N2 241.1 120.0
O1' C1' C2' H1'1 120.2 240.0
O1' C1' C2' H1'2 239.7 119.9
C1' C2' C3' O3' 90.3 123.9
C1' C2' C3' C4' 208.7 242.6
C1' C2' C3' H3' 325.5 1.4
H1'1 C1' C2' H1'2 119.5 239.9
C7N C6N C5N H5N1 302.8 60.1
C7N C6N C5N H5N2 61.3 300.0
H6N1 C6N C7N H6N2 240.7 120.0
C6N C5N C4N H4N1 294.9 60.0
C6N C5N C4N H4N2 55.4 300.0
H5N1 C5N C6N H5N2 241.5 120.1
O2 C2 C1 O1 59.8 57.5
O2 C2 C1 O5 179.6 177.5
O2 C2 C1 H1 299.1 297.5
C1 C2 O2 H2 118.5 120.2
O2 C2 C3 O3 59.8 63.2
C3 C2 O2 H2 239.3 239.9
O2 C2 C3 H3 299.5 303.0
C5N C4N C3N H3N1 20.8 60.0
C5N C4N C3N H3N2 263.4 300.0
H4N1 C4N C5N H4N2 239.5 120.0
C3N C2N C1N O1N 282.3 359.9
C4N C3N C2N H3N1 238.7 239.9
C4N C3N C2N H3N2 121.3 119.9
H2N1 C2N C3N H2N2 238.5 120.0
H3N1 C3N C2N H3N2 242.6 240.0
O6' C1N C2N O1N 187.9 180.1
O2' C2' C1' H1'1 183.0 173.2
O2' C2' C1' H1'2 63.5 293.3
O2' C2' C3' O3' 213.4 243.4
O2' C2' C3' H3' 88.7 120.9
C6' C5' O2' H5' 245.1 237.0
O2' C5' C6' H6'1 286.7 191.0
O2' C5' C6' H6'2 170.5 310.9
O2' C5' C4' O4' 200.8 204.7
O2' C5' C4' H4' 73.2 81.2
C4N C3N C2N H2N1 272.7 59.9
C4N C3N C2N H2N2 34.2 299.9
C2N C3N C4N H3N1 121.3 120.1
C2N C3N C4N H3N2 238.7 240.1
H3N1 C3N C4N H3N2 117.4 120.0
O2 C2 C1 H2 240.4 239.8
O5 C1 C2 O1 119.8 120.0
O1 C1 C2 H1 120.7 120.0
C2 C1 O5 C5 300.8 298.8
O5 C1 C2 H1 240.5 240.0
C1 C2 C3 O3 179.6 183.1
C1 C2 C3 C4 300.3 303.1
C3 C2 C1 H2 118.6 119.9
C1 C2 C3 H3 59.3 62.9
C2 C1 O1 O5 118.4 119.9
O1 C1 C2 C3 298.0 297.6
C2 C1 O1 H1 240.2 240.0
O1 C1 C2 H2 179.4 177.7
O1 C1 O5 C5 59.8 58.8
O5 C1 O1 H1 121.8 120.1
C2 C1 O5 O1 241.0 240.0
O5 C1 C2 C3 57.8 57.6
C2 C1 O5 H1 118.9 120.0
O5 C1 C2 H2 299.2 297.7
O1 C1 O5 H1 237.9 239.9
C1 O5 C5 H5 300.7 301.2
C2' O1 C1 H1 331.2 311.1
C3' C2' C1' H1'1 302.0 291.2
C3' C2' C1' H1'2 182.5 51.3
C4' C3' C2' O3' 118.4 118.7
O3' C3' C2' H3' 124.8 122.5
C2' C3' O3' H6 180.0 180.0
C2' C3' C4' O4' 158.0 139.1
C4' C3' C2' H3' 243.2 241.2
C2' C3' C4' H4' 284.7 262.6
O2 C2 C3 H2 121.7 120.2
C3 C2 C1 O1 298.0 297.6
C3 C2 C1 O5 57.8 57.6
C3 C2 C1 H1 177.3 177.6
C1 C2 C3 H2 241.5 240.1
C4 C3 C2 O3 120.7 119.9
O3 C3 C2 H3 120.3 120.2
C2 C3 O3 HO3 180.0 300.0
C2 C3 C4 O4 180.3 176.9
C4 C3 C2 H3 240.9 240.1
C2 C3 C4 H4 300.5 297.0
C2N C1N O6' O1N 172.3 179.9
C1N O6' C6' H6'1 324.7 60.0
C1N O6' C6' H6'2 80.9 300.0
O6' C6' C5' H5' 293.3 307.9
C5' C6' O6' H6'1 238.1 120.0
C5' C6' O6' H6'2 121.9 240.0
H6'1 C6' O6' H6'2 243.8 120.0
C5 O5 C1 O1 59.8 58.8
C5 O5 C1 H1 181.9 178.8
O5 C5 C4 H4 61.5 62.3
C6 C5 O5 H5 240.1 240.0
O5 C5 C6 H61 199.1 185.1
O5 C5 C6 H62 79.5 305.1
O2' C5' C6' H5' 115.4 123.1
O6' C6' C5' H6'1 121.9 240.0
O6' C6' C5' H6'2 238.1 120.0
C6' C5' C4' O4' 68.2 86.3
C6' C5' C4' H4' 300.6 322.7
H6'1 C6' C5' H6'2 116.2 240.0
C5' C4' C3' O3' 163.1 139.6
C3' C4' C5' O4' 114.2 118.2
C5' C4' C3' H3' 286.8 262.1
C3' C4' C5' H4' 241.8 241.8
O4' C4' C5' H4' 127.6 123.6
C5' C4' O4' H7 180.0 292.7
C2' C3' O3' C4' 113.4 114.8
C2' C3' O3' H3' 236.5 237.4
O3' C3' C4' O4' 278.1 257.8
C4' C3' O3' H3' 123.0 122.6
O3' C3' C4' H4' 44.8 21.3
C2' C3' C4' O3' 239.9 241.3
C2' C3' C4' H3' 116.1 118.8
C5' C4' C3' O4' 244.9 241.8
C5' C4' C3' H4' 118.2 118.3
O3' C3' C4' H3' 236.2 237.5
C4' C3' O3' H6 66.6 65.2
O4' C4' C3' H4' 233.3 236.4
C3' C4' O4' H7 73.1 180.0
C2 C3 O3 C4 119.5 119.6
O3 C3 C2 H2 298.1 303.0
C2 C3 O3 H3 240.8 239.8
O3 C3 C4 O4 299.7 296.8
C4 C3 O3 H3 121.2 120.2
O3 C3 C4 H4 59.8 56.9
C2 C3 C4 O3 240.7 240.1
C4 C3 C2 H2 58.8 63.0
C2 C3 C4 H3 118.7 119.9
O3 C3 C4 H3 238.1 239.8
C4 C3 O3 HO3 60.4 180.4
C5 C4 C3 O4 239.5 240.0
C5 C4 C3 H4 119.3 119.9
O4 C4 C3 H4 239.9 239.9
C3 C4 O4 HO4 180.0 60.0
C5' C4' O4' H4' 233.0 236.3
O4' C4' C3' O3' 278.1 257.8
O4' C4' C3' H3' 41.9 20.3
C3' C4' O4' H4' 126.1 123.6
O6 C6 C5 H5 199.2 305.0
C5 C6 O6 H61 239.8 120.0
C5 C6 O6 H62 120.2 240.0
H61 C6 O6 H62 240.4 120.0
C1 O5 C5 C4 59.0 61.2
C5 C4 C3 O3 179.1 176.8
C3 C4 C5 O4 120.4 120.0
C5 C4 C3 H3 301.0 297.0
C3 C4 C5 H4 240.4 240.1
O4 C4 C5 H4 119.9 120.1
C5 C4 O4 HO4 301.2 179.7
C1 O5 C5 C6 180.7 181.2
O5 C5 C6 H5 120.1 120.0
O6 C6 C5 H61 120.2 240.0
O6 C6 C5 H62 239.8 120.0
C6 C5 C4 O4 60.6 62.5
C6 C5 C4 H4 300.7 302.3
H61 C6 C5 H62 119.6 240.0
O4 C4 C3 O3 299.7 296.8
O4 C4 C3 H3 61.6 57.0
C3 C4 O4 H4 119.7 120.1
C5 C4 O4 H4 240.9 239.9
C2 C1 H1 O1 119.8 120.0
C2 C1 H1 O5 241.7 240.1
H1 C1 C2 C3 177.3 177.6
H1 C1 C2 H2 58.7 57.7
O5 C1 H1 O1 238.0 239.9
H1 C1 O5 C5 181.9 178.8
H2 C2 C1 O1 179.4 177.7
H2 C2 C1 O5 299.2 297.7
C1 C2 H2 C3 119.3 119.7
H2 C2 C1 H1 58.7 57.7
H2 C2 C3 O3 298.1 303.0
H2 C2 C3 C4 58.8 63.0
H2 C2 C3 H3 177.8 182.8
C2 C3 H3 O3 119.1 120.2
C2 C3 H3 C4 241.2 240.4
H3 C3 C2 H2 177.8 182.8
C4 C3 H3 O3 237.9 239.8
H3 C3 O3 HO3 299.2 60.2
H3 C3 C4 O4 61.6 57.0
H3 C3 C4 H4 181.7 177.1
H4 C4 C3 O3 59.8 56.9
C3 C4 H4 O4 240.2 239.9
H4 C4 C3 H3 181.7 177.1
C5 C4 H4 O4 119.7 120.1
H4 C4 O4 HO4 60.3 299.8
H5 C5 C4 O4 300.2 302.5
H5 C5 C4 H4 180.3 182.3
H5 C5 C6 H61 79.0 65.1
H5 C5 C6 H62 319.4 185.1
O6 C6 H61 H62 119.5 240.0
H61 C6 C5 H5 79.0 65.1
C5 C6 H61 H62 240.5 120.0
O6 C6 H62 H61 240.5 120.0
H62 C6 C5 H5 319.4 185.1
C5 C6 H62 H61 119.5 240.0
HO2 O2 C2 H2 61.5 299.9
HO3 O3 C3 H3 299.2 60.2
HO4 O4 C4 H4 60.3 299.8
HO6 O6 C6 H61 300.2 60.0
HO6 O6 C6 H62 59.8 299.9
O1' C1' H1'1 H1'2 119.2 240.0
H1'1 C1' C2' C3' 302.0 291.2
C2' C1' H1'1 H1'2 240.8 120.1
O1' C1' H1'2 H1'1 240.8 120.0
H1'2 C1' C2' C3' 182.5 51.3
C2' C1' H1'2 H1'1 119.2 239.9
C2' C3' H3' O3' 125.5 122.6
C2' C3' H3' C4' 248.5 245.2
C4' C3' H3' O3' 236.9 237.4
H3' C3' O3' H6 303.5 302.5
H3' C3' C4' O4' 41.9 20.3
H3' C3' C4' H4' 168.6 143.9
C5' C4' H4' O4' 126.0 123.6
H4' C4' C3' O3' 44.8 21.3
C3' C4' H4' O4' 235.5 236.4
H4' C4' C3' H3' 168.6 143.9
H4' C4' O4' H7 307.0 56.3
H5' C5' C6' H6'1 171.3 67.9
H5' C5' C6' H6'2 55.1 187.8
H5' C5' C4' O4' 311.8 323.4
H5' C5' C4' H4' 184.2 199.9
O6' C6' H6'1 H6'2 113.7 240.0
H6'1 C6' C5' H5' 171.3 67.9
C5' C6' H6'1 H6'2 246.3 120.0
O6' C6' H6'2 H6'1 246.3 120.0
H6'2 C6' C5' H5' 55.1 187.8
C5' C6' H6'2 H6'1 113.7 240.0
H1' O1' C1' H1'1 300.3 60.0
H1' O1' C1' H1'2 59.8 300.0
H6 O3' C3' H3' 303.5 302.5
H7 O4' C4' H4' 307.0 56.3
C3N C2N H2N1 H2N2 122.2 240.0
H2N1 C2N C3N H3N1 34.1 180.0
H2N1 C2N C3N H3N2 151.4 300.0
H2N1 C2N C1N O1N 163.1 120.0
C3N C2N H2N2 H2N1 237.8 120.0
H2N2 C2N C3N H3N1 155.6 60.0
H2N2 C2N C3N H3N2 273.0 180.0
H2N2 C2N C1N O1N 41.6 240.0
H3N1 C3N C2N H2N1 34.1 180.0
H3N1 C3N C2N H2N2 155.6 60.0
C2N C3N H3N1 H3N2 115.8 120.0
C4N C3N H3N1 H3N2 244.2 240.0
H3N2 C3N C2N H2N1 151.4 300.0
H3N2 C3N C2N H2N2 273.0 180.0
C2N C3N H3N2 H3N1 244.2 240.0
C4N C3N H3N2 H3N1 115.8 120.0
C5N C4N H4N1 H4N2 120.8 240.0
H4N1 C4N C3N H3N1 261.1 180.0
H4N1 C4N C3N H3N2 143.7 60.0
C5N C4N H4N2 H4N1 239.3 120.0
H4N2 C4N C3N H3N1 140.6 300.0
H4N2 C4N C3N H3N2 23.2 180.0
C6N C5N H5N1 H5N2 117.7 239.9
H5N1 C5N C4N H4N1 174.2 179.9
H5N1 C5N C4N H4N2 294.7 60.0
C6N C5N H5N2 H5N1 242.3 120.0
H5N2 C5N C4N H4N1 55.6 300.0
H5N2 C5N C4N H4N2 176.1 180.0
C7N C6N H6N1 H6N2 118.9 240.0
H6N1 C6N C5N H5N1 182.4 180.0
H6N1 C6N C5N H5N2 301.0 60.0
C7N C6N H6N2 H6N1 241.1 120.0
H6N2 C6N C5N H5N1 63.2 300.0
H6N2 C6N C5N H5N2 181.7 180.0
C8N C7N H7N1 H7N2 118.3 240.0
H7N1 C7N C6N H6N1 179.9 180.0
H7N1 C7N C6N H6N2 299.2 60.0
C8N C7N H7N2 H7N1 241.7 120.0
H7N2 C7N C6N H6N1 61.0 300.0
H7N2 C7N C6N H6N2 180.3 180.0
H8N1 C8N C7N H7N1 300.6 180.0
H8N1 C8N C7N H7N2 59.5 60.0
H8N2 C8N H8N1 H8N3 120.0 120.0
H8N2 C8N C7N H7N1 60.6 300.0
H8N2 C8N C7N H7N2 179.5 180.0
H8N1 C8N H8N2 H8N3 240.0 240.0
H8N3 C8N C7N H7N1 180.6 60.0
H8N3 C8N C7N H7N2 299.5 300.0
H8N1 C8N H8N3 H8N2 120.0 120.0