PDB Chemical Component ORX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ORX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
OA	CA	1.359	1.342
OA	HOA	0.949	0.967
CA	OXT	1.368	1.208
CA	CAA	1.556	1.507
CAA	NA	1.567	1.469
CAA	CBA	1.554	1.530
CAA	HAA	1.115	1.090
NA	C4A	1.531	1.468
NA	HNA	1.020	1.009
C4A	C4	1.579	1.507
C4A	H4A1	1.114	1.090
C4A	H4A2	1.115	1.089
C4	C5	1.448	1.384
C4	C3	1.441	1.391
C5	C6	1.387	1.382
C5	C5A	1.487	1.507
C6	N1	1.369	1.318
C6	H6	1.103	1.080
N1	C2	1.398	1.318
C2	C3	1.493	1.386
C2	C2A	1.519	1.507
C3	O3	1.364	1.359
O3	HO3	0.951	0.968
C2A	H2A1	1.115	1.089
C2A	H2A2	1.115	1.091
C2A	H2A3	1.116	1.090
C5A	OP4	1.364	1.428
C5A	H5A1	1.115	1.089
C5A	H5A2	1.115	1.090
OP4	P	1.571	1.609
P	OP1	1.436	1.479
P	OP2	1.526	1.610
P	OP3	1.511	1.609
OP2	HP2	0.949	0.968
OP3	HP3	0.949	0.967
CBA	CGA	1.524	1.531
CBA	HBA1	1.115	1.090
CBA	HBA2	1.114	1.090
CGA	CDA	1.529	1.530
CGA	HGA1	1.116	1.089
CGA	HGA2	1.115	1.090
CDA	NE	1.478	1.469
CDA	HDA1	1.115	1.090
CDA	HDA2	1.115	1.090
NE	HNE1	1.019	1.009
NE	HNE2	1.020	1.008

Bond Angles for ORX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA	OA	HOA	119.4	119.9
OA	CA	OXT	119.4	120.0
OA	CA	CAA	119.7	120.0
OXT	CA	CAA	120.9	120.0
CA	CAA	NA	112.2	109.5
CA	CAA	CBA	107.9	109.5
CA	CAA	HAA	111.0	109.5
NA	CAA	CBA	115.5	109.5
NA	CAA	HAA	102.7	109.4
CAA	NA	C4A	113.7	106.7
CAA	NA	HNA	110.7	106.7
CBA	CAA	HAA	107.5	109.4
CAA	CBA	CGA	115.8	109.5
CAA	CBA	HBA1	109.9	109.5
CAA	CBA	HBA2	109.9	109.5
C4A	NA	HNA	110.7	106.7
NA	C4A	C4	113.4	109.4
NA	C4A	H4A1	110.8	109.4
NA	C4A	H4A2	110.7	109.6
C4	C4A	H4A1	110.8	109.4
C4	C4A	H4A2	110.8	109.5
C4A	C4	C5	123.7	120.8
C4A	C4	C3	126.6	120.8
H4A1	C4A	H4A2	99.5	109.5
C5	C4	C3	109.6	118.4
C4	C5	C6	128.2	119.2
C4	C5	C5A	121.1	120.4
C4	C3	C2	123.9	119.1
C4	C3	O3	124.2	120.4
C6	C5	C5A	110.7	120.4
C5	C6	N1	119.6	120.9
C5	C6	H6	120.9	119.6
C5	C5A	OP4	115.8	109.5
C5	C5A	H5A1	109.9	109.4
C5	C5A	H5A2	109.9	109.4
N1	C6	H6	119.6	119.5
C6	N1	C2	120.5	121.7
N1	C2	C3	118.3	120.7
N1	C2	C2A	107.9	119.6
C3	C2	C2A	133.8	119.7
C2	C3	O3	111.9	120.5
C2	C2A	H2A1	107.9	109.5
C2	C2A	H2A2	112.8	109.5
C2	C2A	H2A3	112.8	109.5
C3	O3	HO3	124.2	106.8
H2A1	C2A	H2A2	112.8	109.4
H2A1	C2A	H2A3	112.7	109.5
H2A2	C2A	H2A3	97.6	109.5
OP4	C5A	H5A1	109.9	109.5
OP4	C5A	H5A2	109.9	109.5
C5A	OP4	P	120.6	106.9
H5A1	C5A	H5A2	100.3	109.5
OP4	P	OP1	111.4	109.4
OP4	P	OP2	103.7	109.5
OP4	P	OP3	103.5	109.5
OP1	P	OP2	120.4	109.5
OP1	P	OP3	105.3	109.5
OP2	P	OP3	111.5	109.5
P	OP2	HP2	103.6	106.8
P	OP3	HP3	103.5	106.8
CGA	CBA	HBA1	109.9	109.5
CGA	CBA	HBA2	110.0	109.5
CBA	CGA	CDA	111.5	109.4
CBA	CGA	HGA1	111.4	109.5
CBA	CGA	HGA2	111.4	109.5
HBA1	CBA	HBA2	100.3	109.5
CDA	CGA	HGA1	111.4	109.5
CDA	CGA	HGA2	111.5	109.5
CGA	CDA	NE	109.4	109.5
CGA	CDA	HDA1	112.2	109.5
CGA	CDA	HDA2	112.2	109.5
HGA1	CGA	HGA2	98.9	109.5
NE	CDA	HDA1	112.2	109.5
NE	CDA	HDA2	112.3	109.4
CDA	NE	HNE1	109.4	106.7
CDA	NE	HNE2	112.2	106.6
HDA1	CDA	HDA2	98.2	109.4
HNE1	NE	HNE2	112.3	106.7

Torsion Angles for ORX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
OXT	CA	OA	CAA	180.0	180.0
OA	CA	CAA	NA	228.7	30.0
OA	CA	CAA	CBA	100.5	270.0
OA	CA	CAA	HAA	342.9	150.0
HOA	OA	CA	OXT	180.1	360.0
HOA	OA	CA	CAA	0.0	180.0
OXT	CA	OA	HOA	180.1	360.0
OA	CA	OXT	CAA	180.0	180.0
OXT	CA	CAA	NA	48.7	210.1
OXT	CA	CAA	CBA	280.4	90.0
OXT	CA	CAA	HAA	162.9	330.0
CAA	CA	OA	HOA	0.0	180.0
OA	CA	CAA	OXT	180.0	180.0
NA	CAA	CA	CBA	128.3	120.1
NA	CAA	CA	HAA	245.8	240.1
CA	CAA	NA	C4A	295.4	89.9
CA	CAA	NA	HNA	170.1	336.2
CBA	CAA	CA	HAA	117.5	120.0
CA	CAA	CBA	CGA	275.4	180.0
CA	CAA	CBA	HBA1	40.6	60.0
CA	CAA	CBA	HBA2	150.1	300.0
CA	CAA	NA	CBA	235.9	240.0
CA	CAA	NA	HAA	119.2	120.0
CBA	CAA	NA	HAA	243.4	240.1
NA	CAA	CBA	CGA	149.0	60.0
NA	CAA	CBA	HBA1	274.3	300.0
NA	CAA	CBA	HBA2	23.7	180.0
C4A	NA	CAA	HNA	125.3	113.8
CAA	NA	C4A	C4	162.8	180.0
CAA	NA	C4A	H4A1	288.1	60.1
CAA	NA	C4A	H4A2	37.6	300.0
CA	CAA	CBA	NA	126.3	120.1
CA	CAA	CBA	HAA	240.2	240.0
NA	CAA	CBA	HAA	113.9	119.9
CBA	CAA	NA	C4A	59.6	210.0
CBA	CAA	NA	HNA	294.3	96.2
CGA	CBA	CAA	HBA1	234.8	120.0
CGA	CBA	CAA	HBA2	125.3	240.0
CAA	CBA	CGA	CDA	237.6	180.0
CAA	CBA	CGA	HGA1	2.9	60.0
CAA	CBA	CGA	HGA2	112.4	300.0
HBA1	CBA	CAA	HBA2	250.5	120.0
CA	CAA	HAA	NA	240.0	240.0
CA	CAA	HAA	CBA	117.8	120.0
NA	CAA	HAA	CBA	237.8	240.0
HAA	CAA	NA	C4A	176.2	329.9
HAA	CAA	NA	HNA	50.9	216.2
HAA	CAA	CBA	CGA	35.2	300.0
HAA	CAA	CBA	HBA1	160.4	180.1
HAA	CAA	CBA	HBA2	269.9	60.0
C4A	NA	CAA	CBA	59.6	210.0
C4A	NA	CAA	HAA	176.2	329.9
CAA	NA	C4A	HNA	234.7	246.3
C4	C4A	NA	H4A1	234.7	119.9
C4	C4A	NA	H4A2	125.2	240.0
NA	C4A	C4	C5	145.1	90.1
NA	C4A	C4	C3	324.5	270.3
H4A1	C4A	NA	H4A2	250.5	120.1
HNA	NA	CAA	CBA	294.3	96.2
HNA	NA	CAA	HAA	50.9	216.2
CAA	NA	HNA	C4A	127.0	113.8
HNA	NA	C4A	C4	288.1	293.7
HNA	NA	C4A	H4A1	53.4	173.8
HNA	NA	C4A	H4A2	162.9	53.7
C4	C4A	NA	HNA	288.1	293.7
NA	C4A	C4	H4A1	125.3	240.1
NA	C4A	C4	H4A2	234.8	120.1
H4A1	C4A	C4	H4A2	109.5	240.0
C5	C4	C4A	C3	180.6	179.8
C4A	C4	C5	C6	180.3	180.0
C4A	C4	C5	C5A	359.9	360.0
C4A	C4	C3	C2	180.6	180.3
C4A	C4	C3	O3	359.4	359.8
H4A1	C4A	NA	HNA	53.4	173.8
NA	C4A	H4A1	C4	233.2	119.9
NA	C4A	H4A1	H4A2	116.6	239.9
C4	C4A	H4A1	H4A2	243.4	120.0
H4A1	C4A	C4	C5	19.8	210.0
H4A1	C4A	C4	C3	199.2	30.2
H4A2	C4A	NA	HNA	162.9	53.7
NA	C4A	H4A2	C4	126.7	240.0
NA	C4A	H4A2	H4A1	243.3	120.0
C4	C4A	H4A2	H4A1	116.6	240.1
H4A2	C4A	C4	C5	270.3	330.0
H4A2	C4A	C4	C3	89.8	150.2
C5	C4	C4A	H4A1	19.8	210.0
C5	C4	C4A	H4A2	270.3	330.0
C4A	C4	C5	C3	179.5	180.2
C5	C4	C3	C2	0.1	0.5
C5	C4	C3	O3	178.9	180.0
C6	C5	C4	C5A	180.4	180.0
C4	C5	C6	N1	359.0	360.0
C4	C5	C6	H6	179.0	180.0
C4	C5	C5A	OP4	49.0	180.0
C4	C5	C5A	H5A1	174.3	300.0
C4	C5	C5A	H5A2	283.8	60.0
C3	C4	C4A	H4A1	199.2	30.2
C3	C4	C4A	H4A2	89.8	150.2
C4A	C4	C3	C5	180.5	179.8
C3	C4	C5	C6	0.8	359.8
C3	C4	C5	C5A	180.4	179.7
N1	C2	C3	C4	359.3	359.4
C4	C3	C2	C2A	180.0	179.8
C2	C3	C4	O3	181.2	180.6
C4	C3	O3	HO3	180.0	90.1
C6	C5	C4	C3	0.8	359.8
C4	C5	C6	C5A	179.6	180.0
C6	C5	C5A	OP4	228.7	0.0
C6	C5	C5A	H5A1	353.9	120.0
C6	C5	C5A	H5A2	103.4	240.0
N1	C6	C5	H6	180.0	180.0
C5	C6	N1	C2	0.3	360.0
C5A	C5	C4	C3	180.4	179.7
C4	C5	C5A	C6	180.3	180.0
C5A	C5	C6	N1	179.4	180.0
C5A	C5	C6	H6	359.4	360.0
OP4	C5A	C5	H5A1	234.7	240.0
OP4	C5A	C5	H5A2	125.3	120.0
C5	C5A	OP4	P	174.2	180.0
H5A1	C5A	C5	H5A2	250.5	240.0
N1	C6	C5	C5A	179.4	180.0
C5	C6	N1	H6	180.0	180.0
C6	N1	C2	C3	0.5	0.3
C6	N1	C2	C2A	180.0	180.0
H6	C6	C5	C5A	359.4	360.0
C5	C6	H6	N1	180.0	180.0
H6	C6	N1	C2	180.3	180.0
C4	C3	C2	N1	359.3	359.4
C2	N1	C6	H6	180.3	180.0
C3	C2	N1	C2A	180.5	180.3
N1	C2	C3	O3	180.4	180.0
N1	C2	C2A	H2A1	180.0	90.0
N1	C2	C2A	H2A2	305.3	210.0
N1	C2	C2A	H2A3	54.8	330.0
C4	C3	C2	O3	179.0	179.4
N1	C2	C3	C2A	179.3	179.7
C3	C2	C2A	H2A1	359.4	269.7
C3	C2	C2A	H2A2	124.7	29.7
C3	C2	C2A	H2A3	234.2	149.7
C2	C3	O3	HO3	358.9	269.5
N1	C2	C2A	C3	180.6	180.3
C2A	C2	C3	O3	1.0	0.3
H2A1	C2A	C2	H2A2	234.7	240.0
H2A1	C2A	C2	H2A3	125.2	120.1
H2A2	C2A	C2	H2A3	250.5	240.0
C4	C3	O3	C2	181.1	180.6
O3	C3	C2	C2A	1.0	0.3
C2	C2A	H2A1	H2A2	125.3	120.0
C2	C2A	H2A1	H2A3	234.7	240.0
H2A2	C2A	H2A1	H2A3	109.4	120.0
C2	C2A	H2A2	H2A1	237.4	240.0
C2	C2A	H2A2	H2A3	118.7	120.0
H2A1	C2A	H2A2	H2A3	241.4	240.0
C2	C2A	H2A3	H2A1	122.6	120.0
C2	C2A	H2A3	H2A2	241.2	240.0
H2A1	C2A	H2A3	H2A2	118.7	120.0
C5	C5A	OP4	H5A1	125.2	120.0
C5	C5A	OP4	H5A2	234.7	240.0
H5A1	C5A	OP4	H5A2	109.5	120.0
C5A	OP4	P	OP1	177.9	60.0
C5A	OP4	P	OP2	47.0	180.0
C5A	OP4	P	OP3	290.6	300.0
C5	C5A	H5A1	OP4	231.5	240.0
C5	C5A	H5A1	H5A2	115.7	119.9
OP4	C5A	H5A1	H5A2	244.3	240.0
H5A1	C5A	OP4	P	48.9	60.0
C5	C5A	H5A2	OP4	128.5	120.0
C5	C5A	H5A2	H5A1	244.3	240.1
OP4	C5A	H5A2	H5A1	115.7	120.0
H5A2	C5A	OP4	P	299.4	300.0
P	OP4	C5A	H5A1	48.9	60.0
P	OP4	C5A	H5A2	299.4	300.0
OP1	P	OP4	OP2	130.9	240.0
OP1	P	OP4	OP3	247.3	120.0
OP2	P	OP4	OP3	116.5	240.0
OP4	P	OP2	HP2	180.0	180.0
OP4	P	OP3	HP3	180.0	300.0
OP4	P	OP1	OP2	238.4	120.0
OP4	P	OP1	OP3	111.5	240.0
OP2	P	OP1	OP3	233.1	120.0
OP1	P	OP2	HP2	54.7	300.0
OP1	P	OP3	HP3	297.1	180.0
OP4	P	OP2	OP1	125.3	240.0
OP4	P	OP2	OP3	249.3	120.0
OP1	P	OP2	OP3	124.0	240.0
OP2	P	OP3	HP3	69.2	60.0
OP4	P	OP3	OP1	242.9	120.0
OP4	P	OP3	OP2	110.8	240.0
OP1	P	OP3	OP2	227.9	120.0
OP3	P	OP2	HP2	290.7	60.0
HP2	OP2	P	OP3	290.7	60.0
CGA	CBA	CAA	HAA	35.2	300.0
CAA	CBA	CGA	HBA1	125.2	240.0
CAA	CBA	CGA	HBA2	234.8	120.0
HBA1	CBA	CGA	HBA2	109.6	240.0
CDA	CGA	CBA	HGA1	234.7	120.0
CDA	CGA	CBA	HGA2	125.3	240.0
CBA	CGA	CDA	NE	181.8	180.0
CBA	CGA	CDA	HDA1	307.0	59.9
CBA	CGA	CDA	HDA2	56.5	300.0
HGA1	CGA	CBA	HGA2	250.5	120.0
HBA1	CBA	CAA	HAA	160.4	180.1
CAA	CBA	HBA1	CGA	231.5	120.0
CAA	CBA	HBA1	HBA2	115.7	240.0
CGA	CBA	HBA1	HBA2	244.2	120.0
HBA1	CBA	CGA	CDA	112.4	300.0
HBA1	CBA	CGA	HGA1	237.7	180.0
HBA1	CBA	CGA	HGA2	347.1	60.0
HBA2	CBA	CAA	HAA	269.9	60.0
CAA	CBA	HBA2	CGA	128.5	240.0
CAA	CBA	HBA2	HBA1	244.3	120.0
CGA	CBA	HBA2	HBA1	115.8	240.0
HBA2	CBA	CGA	CDA	2.9	60.0
HBA2	CBA	CGA	HGA1	128.1	300.0
HBA2	CBA	CGA	HGA2	237.6	180.0
CDA	CGA	CBA	HBA1	112.4	300.0
CDA	CGA	CBA	HBA2	2.9	60.0
CBA	CGA	CDA	HGA1	125.3	240.0
CBA	CGA	CDA	HGA2	234.7	120.0
HGA1	CGA	CDA	HGA2	109.5	240.0
NE	CDA	CGA	HDA1	234.7	120.1
NE	CDA	CGA	HDA2	125.3	240.1
CGA	CDA	NE	HNE1	180.0	180.0
CGA	CDA	NE	HNE2	54.7	293.7
HDA1	CDA	CGA	HDA2	250.6	120.0
HGA1	CGA	CBA	HBA1	237.7	180.0
HGA1	CGA	CBA	HBA2	128.1	300.0
CBA	CGA	HGA1	CDA	234.7	120.0
CBA	CGA	HGA1	HGA2	117.3	240.0
CDA	CGA	HGA1	HGA2	242.6	120.0
HGA1	CGA	CDA	NE	56.5	300.0
HGA1	CGA	CDA	HDA1	181.8	180.0
HGA1	CGA	CDA	HDA2	291.2	60.0
HGA2	CGA	CBA	HBA1	347.1	60.0
HGA2	CGA	CBA	HBA2	237.6	180.0
CBA	CGA	HGA2	CDA	125.3	240.1
CBA	CGA	HGA2	HGA1	242.7	120.0
CDA	CGA	HGA2	HGA1	117.4	239.9
HGA2	CGA	CDA	NE	307.0	60.1
HGA2	CGA	CDA	HDA1	72.3	300.0
HGA2	CGA	CDA	HDA2	181.7	180.0
NE	CDA	CGA	HGA1	56.5	300.0
NE	CDA	CGA	HGA2	307.0	60.1
CGA	CDA	NE	HDA1	125.2	239.9
CGA	CDA	NE	HDA2	234.8	120.0
HDA1	CDA	NE	HDA2	109.5	240.1
HNE1	NE	CDA	HNE2	125.3	246.3
HDA1	CDA	CGA	HGA1	181.8	180.0
HDA1	CDA	CGA	HGA2	72.3	300.0
CGA	CDA	HDA1	NE	236.3	120.1
CGA	CDA	HDA1	HDA2	118.1	240.0
NE	CDA	HDA1	HDA2	241.8	119.9
HDA1	CDA	NE	HNE1	54.8	300.1
HDA1	CDA	NE	HNE2	289.4	53.8
HDA2	CDA	CGA	HGA1	291.2	60.0
HDA2	CDA	CGA	HGA2	181.7	180.0
CGA	CDA	HDA2	NE	123.7	240.0
CGA	CDA	HDA2	HDA1	241.9	120.1
NE	CDA	HDA2	HDA1	118.2	240.0
HDA2	CDA	NE	HNE1	305.3	60.0
HDA2	CDA	NE	HNE2	179.9	173.8
HNE1	NE	CDA	HDA1	54.8	300.1
HNE1	NE	CDA	HDA2	305.3	60.0
CDA	NE	HNE1	HNE2	234.7	113.7
HNE2	NE	CDA	HDA1	289.4	53.8
HNE2	NE	CDA	HDA2	179.9	173.8
CDA	NE	HNE2	HNE1	123.8	246.2