PDB Chemical Component ORN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ORN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.492 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.527 |
1.529 |
| CA |
C |
1.535 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.526 |
1.530 |
| CB |
HB2 |
1.100 |
1.091 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
CD |
1.516 |
1.530 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
NE |
1.476 |
1.469 |
| CD |
HD2 |
1.100 |
1.090 |
| CD |
HD3 |
1.100 |
1.091 |
| NE |
HE1 |
1.000 |
1.009 |
| NE |
HE2 |
1.000 |
1.009 |
| C |
O |
1.251 |
1.209 |
| C |
OXT |
1.248 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for ORN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
109.9 |
109.5 |
| N |
CA |
C |
112.1 |
109.5 |
| N |
CA |
HA |
108.4 |
109.4 |
| H |
N |
H2 |
109.4 |
111.0 |
| CB |
CA |
C |
110.5 |
109.5 |
| CB |
CA |
HA |
107.9 |
109.5 |
| CA |
CB |
CG |
114.2 |
109.5 |
| CA |
CB |
HB2 |
108.3 |
109.5 |
| CA |
CB |
HB3 |
108.3 |
109.5 |
| C |
CA |
HA |
107.9 |
109.5 |
| CA |
C |
O |
119.2 |
120.0 |
| CA |
C |
OXT |
117.7 |
120.0 |
| CG |
CB |
HB2 |
108.3 |
109.4 |
| CG |
CB |
HB3 |
108.3 |
109.4 |
| CB |
CG |
CD |
111.0 |
109.5 |
| CB |
CG |
HG2 |
109.1 |
109.4 |
| CB |
CG |
HG3 |
109.1 |
109.4 |
| HB2 |
CB |
HB3 |
109.5 |
109.4 |
| CD |
CG |
HG2 |
109.1 |
109.5 |
| CD |
CG |
HG3 |
109.1 |
109.5 |
| CG |
CD |
NE |
111.9 |
109.4 |
| CG |
CD |
HD2 |
108.8 |
109.5 |
| CG |
CD |
HD3 |
108.9 |
109.5 |
| HG2 |
CG |
HG3 |
109.5 |
109.5 |
| NE |
CD |
HD2 |
108.9 |
109.5 |
| NE |
CD |
HD3 |
108.9 |
109.5 |
| CD |
NE |
HE1 |
109.5 |
111.0 |
| CD |
NE |
HE2 |
109.5 |
111.0 |
| HD2 |
CD |
HD3 |
109.5 |
109.5 |
| HE1 |
NE |
HE2 |
109.5 |
110.9 |
| O |
C |
OXT |
123.0 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for ORN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
236.7 |
239.9 |
| CB |
CA |
N |
HA |
117.7 |
120.0 |
| N |
CA |
CB |
CG |
63.8 |
295.0 |
| N |
CA |
CB |
HB2 |
184.5 |
55.0 |
| N |
CA |
CB |
HB3 |
303.2 |
175.0 |
| C |
CA |
N |
HA |
241.1 |
240.1 |
| N |
CA |
C |
O |
346.4 |
340.0 |
| N |
CA |
C |
OXT |
163.9 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
180.0 |
300.0 |
| H |
N |
CA |
C |
303.4 |
60.0 |
| H |
N |
CA |
HA |
62.3 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
300.0 |
63.9 |
| H2 |
N |
CA |
C |
63.4 |
184.0 |
| H2 |
N |
CA |
HA |
182.3 |
303.9 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
300.0 |
63.9 |
| N |
CA |
CB |
C |
124.2 |
120.0 |
| N |
CA |
CB |
HA |
242.0 |
240.1 |
| C |
CA |
CB |
HA |
117.7 |
120.0 |
| CB |
CA |
C |
O |
109.4 |
100.0 |
| CB |
CA |
C |
OXT |
286.9 |
280.0 |
| CG |
CB |
CA |
HB2 |
239.3 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.7 |
120.0 |
| CA |
CB |
CG |
CD |
182.4 |
180.0 |
| CA |
CB |
CG |
HG2 |
302.6 |
300.0 |
| CA |
CB |
CG |
HG3 |
62.1 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
241.4 |
240.1 |
| C |
CA |
N |
H |
303.4 |
60.0 |
| C |
CA |
N |
H2 |
63.4 |
184.0 |
| N |
CA |
C |
CB |
237.0 |
240.0 |
| N |
CA |
C |
HA |
119.2 |
119.9 |
| CB |
CA |
C |
HA |
242.2 |
239.9 |
| C |
CA |
CB |
CG |
299.6 |
175.0 |
| C |
CA |
CB |
HB2 |
60.3 |
295.0 |
| C |
CA |
CB |
HB3 |
178.9 |
55.0 |
| O |
C |
CA |
OXT |
182.5 |
180.0 |
| CA |
C |
OXT |
HXT |
182.6 |
179.9 |
| HA |
CA |
N |
H |
62.3 |
180.0 |
| HA |
CA |
N |
H2 |
182.3 |
303.9 |
| N |
CA |
HA |
CB |
119.0 |
120.0 |
| N |
CA |
HA |
C |
238.5 |
240.1 |
| CB |
CA |
HA |
C |
119.4 |
120.1 |
| HA |
CA |
CB |
CG |
181.9 |
55.0 |
| HA |
CA |
CB |
HB2 |
302.6 |
175.0 |
| HA |
CA |
CB |
HB3 |
61.2 |
294.9 |
| HA |
CA |
C |
O |
227.2 |
220.1 |
| HA |
CA |
C |
OXT |
44.6 |
40.1 |
| CG |
CB |
CA |
C |
299.6 |
175.0 |
| CG |
CB |
CA |
HA |
181.9 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.7 |
120.1 |
| CA |
CB |
CG |
HB3 |
239.3 |
239.9 |
| HB2 |
CB |
CG |
HB3 |
118.7 |
119.9 |
| CD |
CG |
CB |
HG2 |
239.8 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.2 |
120.0 |
| CB |
CG |
CD |
NE |
195.1 |
180.0 |
| CB |
CG |
CD |
HD2 |
315.5 |
300.0 |
| CB |
CG |
CD |
HD3 |
74.8 |
60.0 |
| HG2 |
CG |
CB |
HG3 |
240.5 |
240.0 |
| HB2 |
CB |
CA |
C |
60.3 |
295.0 |
| HB2 |
CB |
CA |
HA |
302.6 |
175.0 |
| CA |
CB |
HB2 |
CG |
235.7 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
117.8 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
242.1 |
240.1 |
| HB2 |
CB |
CG |
CD |
61.7 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
181.9 |
179.9 |
| HB2 |
CB |
CG |
HG3 |
301.4 |
299.9 |
| HB3 |
CB |
CA |
C |
178.9 |
55.0 |
| HB3 |
CB |
CA |
HA |
61.2 |
294.9 |
| CA |
CB |
HB3 |
CG |
124.3 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
242.2 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
117.9 |
119.9 |
| HB3 |
CB |
CG |
CD |
303.0 |
300.1 |
| HB3 |
CB |
CG |
HG2 |
63.3 |
60.1 |
| HB3 |
CB |
CG |
HG3 |
182.8 |
180.1 |
| CD |
CG |
CB |
HB2 |
61.7 |
60.0 |
| CD |
CG |
CB |
HB3 |
303.0 |
300.1 |
| CB |
CG |
CD |
HG2 |
120.2 |
119.9 |
| CB |
CG |
CD |
HG3 |
239.8 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
119.5 |
120.1 |
| NE |
CD |
CG |
HD2 |
239.6 |
240.0 |
| NE |
CD |
CG |
HD3 |
120.4 |
120.0 |
| CG |
CD |
NE |
HE1 |
180.0 |
56.1 |
| CG |
CD |
NE |
HE2 |
300.0 |
180.0 |
| HD2 |
CD |
CG |
HD3 |
240.7 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
181.9 |
179.9 |
| HG2 |
CG |
CB |
HB3 |
63.3 |
60.1 |
| CB |
CG |
HG2 |
CD |
238.6 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
119.3 |
119.9 |
| CD |
CG |
HG2 |
HG3 |
240.7 |
239.9 |
| HG2 |
CG |
CD |
NE |
74.9 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
195.3 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
314.6 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
301.4 |
299.9 |
| HG3 |
CG |
CB |
HB3 |
182.8 |
180.1 |
| CB |
CG |
HG3 |
CD |
121.4 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
240.7 |
240.1 |
| CD |
CG |
HG3 |
HG2 |
119.3 |
120.1 |
| HG3 |
CG |
CD |
NE |
315.4 |
299.9 |
| HG3 |
CG |
CD |
HD2 |
75.7 |
60.0 |
| HG3 |
CG |
CD |
HD3 |
195.0 |
180.0 |
| NE |
CD |
CG |
HG2 |
74.9 |
60.0 |
| NE |
CD |
CG |
HG3 |
315.4 |
299.9 |
| CG |
CD |
NE |
HD2 |
120.4 |
120.0 |
| CG |
CD |
NE |
HD3 |
239.6 |
240.0 |
| HD2 |
CD |
NE |
HD3 |
119.3 |
120.0 |
| HE1 |
NE |
CD |
HE2 |
240.0 |
236.1 |
| HD2 |
CD |
CG |
HG2 |
195.3 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
75.7 |
60.0 |
| CG |
CD |
HD2 |
NE |
237.8 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
118.9 |
120.0 |
| NE |
CD |
HD2 |
HD3 |
241.1 |
240.0 |
| HD2 |
CD |
NE |
HE1 |
59.6 |
296.1 |
| HD2 |
CD |
NE |
HE2 |
179.6 |
60.0 |
| HD3 |
CD |
CG |
HG2 |
314.6 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
195.0 |
180.0 |
| CG |
CD |
HD3 |
NE |
122.2 |
120.0 |
| CG |
CD |
HD3 |
HD2 |
241.1 |
240.0 |
| NE |
CD |
HD3 |
HD2 |
118.9 |
120.0 |
| HD3 |
CD |
NE |
HE1 |
300.3 |
176.1 |
| HD3 |
CD |
NE |
HE2 |
60.3 |
300.0 |
| HE1 |
NE |
CD |
HD2 |
59.6 |
296.1 |
| HE1 |
NE |
CD |
HD3 |
300.3 |
176.1 |
| CD |
NE |
HE1 |
HE2 |
120.0 |
123.9 |
| HE2 |
NE |
CD |
HD2 |
179.6 |
60.0 |
| HE2 |
NE |
CD |
HD3 |
60.3 |
300.0 |
| CD |
NE |
HE2 |
HE1 |
240.0 |
236.1 |
| O |
C |
CA |
HA |
227.2 |
220.1 |
| CA |
C |
O |
OXT |
177.3 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
359.9 |
| OXT |
C |
CA |
HA |
44.6 |
40.1 |
| CA |
C |
OXT |
O |
182.6 |
180.0 |