PDB Chemical Component ORG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ORG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.282 1.330
N1 C6 1.447 1.329
C2 N3 1.453 1.329
C2 N7 1.307 1.381
N3 C4 1.288 1.329
C4 N5 1.451 1.330
C4 N8 1.320 1.380
N5 C6 1.279 1.329
C6 C9 1.422 1.433
N7 C16 1.472 1.465
N7 HN7 1.000 0.970
N8 C10 1.484 1.469
N8 C14 1.483 1.469
C9 N15 1.384 1.136
C10 C11 1.558 1.531
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C11 N12 1.496 1.470
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
N12 C13 1.496 1.470
N12 HN12 1.000 1.009
C13 C14 1.553 1.531
C13 H13 1.099 1.090
C13 H13A 1.100 1.090
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C16 C17 1.561 1.529
C16 C21 1.559 1.530
C16 H16 1.100 1.090
C17 C18 1.564 1.530
C17 H17 1.100 1.091
C17 H17A 1.100 1.090
C18 C19 1.567 1.530
C18 H18 1.100 1.091
C18 H18A 1.100 1.089
C19 C20 1.565 1.531
C19 H19 1.100 1.090
C19 H19A 1.100 1.090
C20 C21 1.566 1.530
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.090

Bond Angles for ORG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 122.8 119.9
N1 C2 N3 116.6 120.0
N1 C2 N7 122.9 120.0
N1 C6 N5 117.4 120.0
N1 C6 C9 121.6 120.0
N3 C2 N7 120.5 120.0
C2 N3 C4 124.0 120.0
C2 N7 C16 123.8 120.0
C2 N7 HN7 105.0 119.9
N3 C4 N5 115.7 120.0
N3 C4 N8 122.6 120.0
N5 C4 N8 121.7 120.0
C4 N5 C6 123.5 120.0
C4 N8 C10 121.8 111.0
C4 N8 C14 121.1 111.0
N5 C6 C9 121.0 120.0
C6 C9 N15 129.6 179.9
C16 N7 HN7 104.9 120.0
N7 C16 C17 111.4 109.5
N7 C16 C21 109.2 109.4
N7 C16 H16 108.5 109.5
C10 N8 C14 117.1 110.9
N8 C10 C11 108.1 109.4
N8 C10 H10 109.9 109.5
N8 C10 H10A 109.9 109.5
N8 C14 C13 108.0 109.4
N8 C14 H14 109.9 109.5
N8 C14 H14A 109.9 109.5
C11 C10 H10 109.9 109.5
C11 C10 H10A 109.9 109.4
C10 C11 N12 109.3 109.4
C10 C11 H11 109.5 109.5
C10 C11 H11A 109.5 109.5
H10 C10 H10A 109.0 109.5
N12 C11 H11 109.5 109.4
N12 C11 H11A 109.5 109.5
C11 N12 C13 114.3 110.8
C11 N12 HN12 107.9 111.0
H11 C11 H11A 109.4 109.5
C13 N12 HN12 107.9 111.0
N12 C13 C14 109.1 109.4
N12 C13 H13 109.6 109.5
N12 C13 H13A 109.6 109.5
C14 C13 H13 109.6 109.5
C14 C13 H13A 109.6 109.5
C13 C14 H14 110.0 109.5
C13 C14 H14A 110.0 109.4
H13 C13 H13A 109.4 109.5
H14 C14 H14A 109.0 109.5
C17 C16 C21 110.0 109.5
C17 C16 H16 107.8 109.5
C16 C17 C18 111.3 109.5
C16 C17 H17 108.9 109.4
C16 C17 H17A 108.8 109.5
C21 C16 H16 110.0 109.4
C16 C21 C20 110.7 109.5
C16 C21 H21 109.1 109.5
C16 C21 H21A 109.1 109.5
C18 C17 H17 108.9 109.5
C18 C17 H17A 108.9 109.5
C17 C18 C19 110.1 109.5
C17 C18 H18 109.3 109.4
C17 C18 H18A 109.3 109.5
H17 C17 H17A 110.1 109.5
C19 C18 H18 109.3 109.5
C19 C18 H18A 109.3 109.5
C18 C19 C20 111.1 109.5
C18 C19 H19 108.9 109.5
C18 C19 H19A 108.9 109.5
H18 C18 H18A 109.7 109.5
C20 C19 H19 109.0 109.4
C20 C19 H19A 108.9 109.4
C19 C20 C21 110.9 109.4
C19 C20 H20 109.0 109.4
C19 C20 H20A 109.0 109.5
H19 C19 H19A 110.0 109.5
C21 C20 H20 109.0 109.5
C21 C20 H20A 109.0 109.5
C20 C21 H21 109.0 109.5
C20 C21 H21A 109.0 109.4
H20 C20 H20A 109.9 109.5
H21 C21 H21A 109.9 109.4

Torsion Angles for ORG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 N5 0.0 359.9
C2 N1 C6 C9 179.9 180.0
N3 C2 N1 N7 180.1 180.0
N1 C2 N3 C4 0.1 360.0
N1 C2 N7 C16 19.4 0.1
N1 C2 N7 HN7 139.4 180.0
C6 N1 C2 N3 359.9 0.1
C6 N1 C2 N7 179.8 180.0
C4 N5 C6 N1 0.1 0.0
N5 C6 N1 C9 180.1 179.9
N1 C6 C9 N15 177.4 340.1
N3 C2 N1 C6 359.9 0.1
N1 C2 N3 N7 179.9 180.0
N3 C2 N7 C16 199.3 180.0
N3 C2 N7 HN7 319.3 360.0
C2 N3 C4 N5 360.0 360.0
C2 N3 C4 N8 180.1 180.0
N7 C2 N1 C6 179.8 180.0
N1 C2 N7 N3 180.1 180.0
N7 C2 N3 C4 180.2 180.0
C16 N7 C2 HN7 240.0 180.1
C2 N7 C16 C17 79.1 155.0
C2 N7 C16 C21 200.7 275.0
C2 N7 C16 H16 320.6 34.9
C4 N3 C2 N7 180.2 180.0
N5 C4 N3 N8 179.9 180.0
N3 C4 N5 C6 359.9 0.0
N3 C4 N8 C10 0.2 180.0
N3 C4 N8 C14 180.0 56.2
N1 C6 N5 C4 0.1 0.0
N3 C4 N5 N8 180.1 180.0
N5 C4 N8 C10 180.4 0.0
N5 C4 N8 C14 0.2 236.2
C4 N5 C6 C9 180.2 179.9
N3 C4 N8 N5 179.8 180.0
N8 C4 N5 C6 179.8 180.0
C10 N8 C4 C14 180.2 123.8
C4 N8 C10 C11 123.2 176.8
C4 N8 C10 H10 243.3 296.8
C4 N8 C10 H10A 3.3 56.9
C4 N8 C14 C13 237.4 183.2
C4 N8 C14 H14 357.4 303.1
C4 N8 C14 H14A 117.3 63.2
N1 C6 N5 C9 179.9 180.1
C6 N5 C4 N8 179.8 180.0
N5 C6 C9 N15 357.3 160.2
N1 C6 C9 N5 180.1 179.9
C2 N7 C16 HN7 120.0 179.9
C17 C16 N7 C21 238.4 240.0
C17 C16 N7 H16 118.5 120.1
N7 C16 C17 C18 179.5 180.0
N7 C16 C17 H17 299.5 300.0
N7 C16 C17 H17A 59.5 60.0
C21 C16 N7 H16 240.1 240.1
N7 C16 C21 C20 180.0 180.0
N7 C16 C21 H21 300.0 300.0
N7 C16 C21 H21A 60.0 60.0
C2 N7 HN7 C16 228.1 180.1
HN7 N7 C16 C17 319.0 335.0
HN7 N7 C16 C21 80.7 95.0
HN7 N7 C16 H16 200.6 214.9
C4 N8 C10 C14 179.8 236.1
C10 N8 C14 C13 57.2 59.3
C10 N8 C14 H14 177.2 179.3
C10 N8 C14 H14A 297.2 299.4
C11 C10 N8 H10 240.0 240.0
C11 C10 N8 H10A 120.0 119.9
N8 C10 C11 N12 52.8 58.4
N8 C10 C11 H11 172.8 178.4
N8 C10 C11 H11A 292.9 298.5
H10 C10 N8 H10A 240.0 239.9
C4 N8 C14 C10 180.2 123.9
C14 N8 C10 C11 303.4 300.7
C14 N8 C10 H10 63.4 60.6
C14 N8 C10 H10A 183.4 180.7
N12 C13 C14 N8 306.1 301.6
N8 C14 C13 H13 186.1 181.6
N8 C14 C13 H13A 66.1 61.6
C13 C14 N8 H14 240.0 240.0
C13 C14 N8 H14A 120.0 119.9
H14 C14 N8 H14A 240.0 239.9
C11 C10 N8 C14 303.4 300.7
N8 C10 C11 H10 120.0 120.0
N8 C10 C11 H10A 240.0 240.0
H10 C10 C11 H10A 120.0 120.0
N12 C11 C10 H11 240.0 240.1
N12 C11 C10 H11A 120.0 120.0
C10 C11 N12 C13 302.2 300.7
C10 C11 N12 HN12 62.2 64.5
H11 C11 C10 H11A 240.0 239.9
H10 C10 N8 C14 63.4 60.6
N8 C10 H10 C11 241.1 240.1
N8 C10 H10 H10A 120.6 120.1
C11 C10 H10 H10A 239.5 240.0
H10 C10 C11 N12 292.8 298.5
H10 C10 C11 H11 52.9 58.4
H10 C10 C11 H11A 172.9 178.5
H10A C10 N8 C14 183.4 180.7
N8 C10 H10A C11 118.9 119.9
N8 C10 H10A H10 239.5 239.9
C11 C10 H10A H10 120.6 120.0
H10A C10 C11 N12 172.8 178.4
H10A C10 C11 H11 292.9 298.3
H10A C10 C11 H11A 52.9 58.4
N12 C11 C10 H10 292.8 298.5
N12 C11 C10 H10A 172.8 178.4
C10 C11 N12 H11 120.0 120.0
C10 C11 N12 H11A 240.0 240.0
H11 C11 N12 H11A 120.0 120.0
C13 N12 C11 HN12 240.0 236.2
C11 N12 C13 C14 58.4 59.3
C11 N12 C13 H13 178.4 179.3
C11 N12 C13 H13A 298.4 299.3
H11 C11 C10 H10 52.9 58.4
H11 C11 C10 H10A 292.9 298.3
C10 C11 H11 N12 240.1 240.1
C10 C11 H11 H11A 120.1 120.1
N12 C11 H11 H11A 239.9 240.0
H11 C11 N12 C13 182.2 180.7
H11 C11 N12 HN12 302.2 304.5
H11A C11 C10 H10 172.9 178.5
H11A C11 C10 H10A 52.9 58.4
C10 C11 H11A N12 119.9 119.9
C10 C11 H11A H11 240.0 239.9
N12 C11 H11A H11 120.1 120.0
H11A C11 N12 C13 62.1 60.7
H11A C11 N12 HN12 182.2 184.5
N8 C14 C13 N12 306.1 301.6
C13 N12 C11 H11 182.2 180.7
C13 N12 C11 H11A 62.1 60.7
C11 N12 C13 HN12 120.0 123.8
C14 C13 N12 H13 240.0 240.0
C14 C13 N12 H13A 120.0 120.0
N12 C13 C14 H14 186.1 181.6
N12 C13 C14 H14A 66.1 61.6
H13 C13 N12 H13A 240.0 240.0
HN12 N12 C11 H11 302.2 304.5
HN12 N12 C11 H11A 182.2 184.5
C11 N12 HN12 C13 236.1 236.3
HN12 N12 C13 C14 298.4 295.5
HN12 N12 C13 H13 58.4 55.5
HN12 N12 C13 H13A 178.4 175.5
N8 C14 C13 H14 120.0 120.0
N8 C14 C13 H14A 240.0 240.0
C14 C13 N12 HN12 298.4 295.5
N12 C13 C14 H13 120.0 120.0
N12 C13 C14 H13A 240.0 240.0
H13 C13 C14 H13A 120.0 120.1
H14 C14 C13 H14A 120.0 120.0
H13 C13 N12 HN12 58.4 55.5
N12 C13 H13 C14 240.3 240.1
N12 C13 H13 H13A 120.1 120.0
C14 C13 H13 H13A 239.8 239.9
H13 C13 C14 H14 66.1 61.7
H13 C13 C14 H14A 306.1 301.6
H13A C13 N12 HN12 178.4 175.5
N12 C13 H13A C14 119.7 119.9
N12 C13 H13A H13 239.9 240.0
C14 C13 H13A H13 120.2 120.1
H13A C13 C14 H14 306.1 301.6
H13A C13 C14 H14A 186.1 181.6
N8 C14 H14 C13 241.2 240.1
N8 C14 H14 H14A 120.6 120.1
H14 C14 C13 H13 66.1 61.7
H14 C14 C13 H13A 306.1 301.6
C13 C14 H14 H14A 239.4 240.0
N8 C14 H14A C13 118.9 119.9
N8 C14 H14A H14 239.4 239.9
H14A C14 C13 H13 306.1 301.6
H14A C14 C13 H13A 186.1 181.6
C13 C14 H14A H14 120.6 120.0
C17 C16 N7 HN7 319.0 335.0
N7 C16 C17 C21 121.2 120.0
N7 C16 C17 H16 241.1 239.9
C21 C16 C17 H16 119.9 119.9
C17 C16 C21 C20 302.5 300.0
C17 C16 C21 H21 62.5 60.0
C17 C16 C21 H21A 182.5 180.0
C18 C17 C16 H17 240.0 240.0
C18 C17 C16 H17A 120.0 120.0
C16 C17 C18 C19 302.7 300.0
C16 C17 C18 H18 62.7 59.9
C16 C17 C18 H18A 182.7 179.9
H17 C17 C16 H17A 240.0 240.0
C21 C16 N7 HN7 80.7 95.0
N7 C16 C21 C17 237.5 240.0
N7 C16 C21 H16 119.0 120.0
C17 C16 C21 H16 241.5 240.0
C21 C16 C17 C18 58.3 60.0
C21 C16 C17 H17 178.3 180.0
C21 C16 C17 H17A 298.3 300.0
C19 C20 C21 C16 56.8 60.0
C16 C21 C20 H20 296.7 300.0
C16 C21 C20 H20A 176.8 180.0
C20 C21 C16 H21 240.0 240.0
C20 C21 C16 H21A 120.0 120.0
H21 C21 C16 H21A 240.0 240.0
H16 C16 N7 HN7 200.6 214.9
N7 C16 H16 C17 120.7 120.1
N7 C16 H16 C21 240.6 240.1
C17 C16 H16 C21 119.9 120.0
H16 C16 C17 C18 298.4 300.1
H16 C16 C17 H17 58.4 60.1
H16 C16 C17 H17A 178.4 180.0
H16 C16 C21 C20 61.0 60.0
H16 C16 C21 H21 181.0 180.0
H16 C16 C21 H21A 301.0 300.0
C18 C17 C16 C21 58.3 60.0
C18 C17 C16 H16 298.4 300.1
C16 C17 C18 H17 120.0 120.0
C16 C17 C18 H17A 240.0 240.0
H17 C17 C18 H17A 120.0 120.0
C19 C18 C17 H18 240.0 240.0
C19 C18 C17 H18A 120.0 120.1
C17 C18 C19 C20 55.8 60.0
C17 C18 C19 H19 175.9 179.9
C17 C18 C19 H19A 295.9 300.0
H18 C18 C17 H18A 240.0 240.0
H17 C17 C16 C21 178.3 180.0
H17 C17 C16 H16 58.4 60.1
C16 C17 H17 C18 238.5 240.0
C16 C17 H17 H17A 119.2 120.0
C18 C17 H17 H17A 240.7 240.0
H17 C17 C18 C19 182.7 180.0
H17 C17 C18 H18 302.7 300.0
H17 C17 C18 H18A 62.7 59.9
H17A C17 C16 C21 298.3 300.0
H17A C17 C16 H16 178.4 180.0
C16 C17 H17A C18 121.5 120.0
C16 C17 H17A H17 240.8 240.0
C18 C17 H17A H17 119.3 120.0
H17A C17 C18 C19 62.7 60.0
H17A C17 C18 H18 182.7 180.0
H17A C17 C18 H18A 302.7 299.9
C19 C18 C17 H17 182.7 180.0
C19 C18 C17 H17A 62.7 60.0
C17 C18 C19 H18 120.0 119.9
C17 C18 C19 H18A 240.0 240.0
H18 C18 C19 H18A 120.0 120.0
C20 C19 C18 H19 240.0 240.0
C20 C19 C18 H19A 120.0 120.0
C18 C19 C20 C21 304.1 300.0
C18 C19 C20 H20 64.1 60.0
C18 C19 C20 H20A 184.0 179.9
H19 C19 C18 H19A 240.0 240.0
H18 C18 C17 H17 302.7 300.0
H18 C18 C17 H17A 182.7 180.0
C17 C18 H18 C19 239.5 240.1
C17 C18 H18 H18A 119.7 120.0
C19 C18 H18 H18A 240.2 239.9
H18 C18 C19 C20 295.9 300.1
H18 C18 C19 H19 55.9 60.0
H18 C18 C19 H19A 175.9 180.1
H18A C18 C17 H17 62.7 59.9
H18A C18 C17 H17A 302.7 299.9
C17 C18 H18A C19 120.5 120.0
C17 C18 H18A H18 240.3 240.0
C19 C18 H18A H18 119.8 120.0
H18A C18 C19 C20 175.9 180.0
H18A C18 C19 H19 295.9 300.0
H18A C18 C19 H19A 55.9 60.0
C16 C21 C20 C19 56.8 60.0
C20 C19 C18 H18 295.9 300.1
C20 C19 C18 H18A 175.9 180.0
C18 C19 C20 H19 120.0 120.0
C18 C19 C20 H19A 240.0 240.0
H19 C19 C20 H19A 120.0 120.0
C21 C20 C19 H20 240.0 240.0
C21 C20 C19 H20A 120.0 120.1
C19 C20 C21 H21 296.8 300.0
C19 C20 C21 H21A 176.8 180.0
H20 C20 C19 H20A 240.0 240.0
H19 C19 C18 H18 55.9 60.0
H19 C19 C18 H18A 295.9 300.0
C18 C19 H19 C20 238.7 240.0
C18 C19 H19 H19A 119.3 120.0
C20 C19 H19 H19A 240.6 240.0
H19 C19 C20 C21 184.1 180.0
H19 C19 C20 H20 304.1 300.0
H19 C19 C20 H20A 64.1 60.0
H19A C19 C18 H18 175.9 180.1
H19A C19 C18 H18A 55.9 60.0
C18 C19 H19A C20 121.3 120.0
C18 C19 H19A H19 240.7 240.0
C20 C19 H19A H19 119.4 120.0
H19A C19 C20 C21 64.0 60.0
H19A C19 C20 H20 184.1 180.0
H19A C19 C20 H20A 304.0 300.0
C20 C21 C16 H16 61.0 60.0
C16 C21 C20 H21 120.0 120.0
C16 C21 C20 H21A 240.0 240.0
C21 C20 C19 H19 184.1 180.0
C21 C20 C19 H19A 64.0 60.0
C19 C20 C21 H20 120.0 120.0
C19 C20 C21 H20A 240.0 240.0
H20 C20 C21 H20A 119.9 120.0
H21 C21 C20 H21A 120.0 119.9
H20 C20 C19 H19 304.1 300.0
H20 C20 C19 H19A 184.1 180.0
C19 C20 H20 C21 238.8 240.0
C19 C20 H20 H20A 119.4 120.0
C21 C20 H20 H20A 240.6 239.9
H20 C20 C21 H21 176.7 180.0
H20 C20 C21 H21A 56.7 60.1
H20A C20 C19 H19 64.1 60.0
H20A C20 C19 H19A 304.0 300.0
C19 C20 H20A C21 121.2 120.0
C19 C20 H20A H20 240.6 240.0
C21 C20 H20A H20 119.4 120.0
H20A C20 C21 H21 56.8 60.0
H20A C20 C21 H21A 296.8 300.1
H21 C21 C16 H16 181.0 180.0
C16 C21 H21 C20 239.0 240.0
C16 C21 H21 H21A 119.5 120.1
H21 C21 C20 H20 176.7 180.0
H21 C21 C20 H20A 56.8 60.0
C20 C21 H21 H21A 240.5 240.1
H21A C21 C16 H16 301.0 300.0
C16 C21 H21A C20 121.0 120.0
C16 C21 H21A H21 240.5 240.0
H21A C21 C20 H20 56.7 60.1
H21A C21 C20 H20A 296.8 300.1
C20 C21 H21A H21 119.5 119.9