PDB Chemical Component OPL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OPL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.430	1.430
C1	C2	1.484	1.529
C1	O2	1.438	1.429
C2	C3	1.295	1.530
C2	C5	1.523	1.531
C2	H2	1.100	1.090
C3	C4	1.482	1.507
C3	O4	1.341	1.429
C3	H3	1.100	1.090
O3	C4	1.297	1.207
C4	H4	1.080	1.080
O4	HO4	0.949	0.967
C5	H5	1.100	1.090
C5	H5A	1.100	1.090
C5	H5B	1.100	1.090
O1	H8	0.950	0.967
C1	H9	1.100	1.090
O2	H10	0.950	0.967

Bond Angles for OPL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	116.6	109.4
O1	C1	O2	117.1	109.5
C1	O1	H8	109.5	114.0
O1	C1	H9	102.7	109.4
C2	C1	O2	112.6	109.5
C1	C2	C3	120.1	109.5
C1	C2	C5	115.9	109.5
C1	C2	H2	102.5	109.5
C2	C1	H9	102.2	109.5
O2	C1	H9	102.6	109.5
C1	O2	H10	109.5	114.0
C3	C2	C5	109.2	109.4
C3	C2	H2	104.4	109.5
C2	C3	C4	116.9	109.5
C2	C3	O4	99.7	109.5
C2	C3	H3	112.7	109.5
C5	C2	H2	102.2	109.4
C2	C5	H5	109.5	109.4
C2	C5	H5A	109.5	109.5
C2	C5	H5B	109.5	109.5
C4	C3	O4	105.2	109.5
C4	C3	H3	109.7	109.4
C3	C4	O3	122.0	120.0
C3	C4	H4	119.0	120.0
O4	C3	H3	111.9	109.5
C3	O4	HO4	109.5	114.0
O3	C4	H4	119.0	120.0
H5	C5	H5A	109.5	109.5
H5	C5	H5B	109.5	109.5
H5A	C5	H5B	109.4	109.5

Torsion Angles for OPL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	O2	137.6	240.0
O1	C1	C2	C3	229.3	180.0
O1	C1	C2	C5	4.0	300.0
O1	C1	C2	H2	114.3	60.0
C2	C1	O1	H9	249.1	120.0
O2	C1	O1	H9	111.5	240.0
O1	C1	O2	H10	180.0	300.0
O1	C1	C2	O2	220.5	120.0
C2	C1	O1	H8	180.0	180.0
O1	C1	C2	H9	111.2	240.0
O2	C1	C2	H9	250.6	120.0
C2	C1	O2	H10	40.7	59.9
C3	C2	C1	C5	225.3	240.0
C3	C2	C1	H2	115.0	120.0
C1	C2	C3	C4	92.1	185.0
C1	C2	C3	O4	339.5	65.0
C1	C2	C3	H3	220.7	305.0
C5	C2	C1	H2	249.7	240.0
C1	C2	C5	H5	180.0	60.0
C1	C2	C5	H5A	300.0	180.0
C1	C2	C5	H5B	60.0	300.1
O1	C1	O2	C2	139.3	240.0
O2	C1	O1	H8	42.4	300.0
O1	C1	O2	H9	248.4	120.0
O2	C1	C2	C3	8.8	60.0
O2	C1	C2	C5	143.5	180.0
O2	C1	C2	H2	253.8	300.0
C2	C1	O2	H9	109.2	239.9
C3	C2	C1	O2	8.8	60.0
C1	C2	C3	C5	137.4	120.0
C1	C2	C3	H2	246.0	239.9
C3	C2	C1	H9	118.1	300.0
C5	C2	C3	H2	108.6	119.9
C3	C2	C5	H5	319.4	180.0
C3	C2	C5	H5A	79.4	300.0
C3	C2	C5	H5B	199.4	60.0
C4	C3	C2	O4	112.7	120.0
C4	C3	C2	H3	231.5	240.0
C2	C3	C4	O3	350.0	240.0
C2	C3	C4	H4	170.0	59.9
O4	C3	C2	H3	118.8	120.0
C2	C3	O4	HO4	180.0	60.0
C5	C2	C1	O2	143.5	180.0
C1	C2	C5	C3	220.6	240.0
C1	C2	C5	H2	110.5	120.1
C5	C2	C1	H9	252.8	60.0
C3	C2	C5	H2	249.9	240.0
C5	C2	C3	C4	314.8	65.0
C5	C2	C3	O4	202.1	305.0
C5	C2	C3	H3	83.3	185.0
H5	C5	C2	H5A	240.0	240.0
H5	C5	C2	H5B	120.0	120.0
H5A	C5	C2	H5B	240.0	239.9
H2	C2	C1	O2	253.8	300.0
C1	C2	H2	C3	126.0	120.0
C1	C2	H2	C5	239.7	240.0
H2	C2	C1	H9	3.2	179.9
C3	C2	H2	C5	113.7	119.9
H2	C2	C3	C4	206.2	305.1
H2	C2	C3	O4	93.5	185.0
H2	C2	C3	H3	334.7	65.1
H2	C2	C5	H5	69.5	300.0
H2	C2	C5	H5A	189.5	60.0
H2	C2	C5	H5B	309.5	180.0
C4	C3	C2	C5	314.8	65.0
C4	C3	C2	H2	206.2	305.1
C2	C3	C4	O4	250.5	240.0
C2	C3	C4	H3	129.9	120.0
O4	C3	C4	H3	239.5	240.0
C4	C3	O4	HO4	58.5	300.0
O3	C4	C3	H4	180.0	180.1
O4	C3	C2	C5	202.1	305.0
O4	C3	C2	H2	93.5	185.0
C2	C3	O4	C4	121.5	120.0
C2	C3	O4	H3	240.6	240.0
C4	C3	O4	H3	119.1	120.0
O4	C3	C4	O3	99.5	0.0
O4	C3	C4	H4	279.5	180.0
H3	C3	C2	C5	83.3	185.0
H3	C3	C2	H2	334.7	65.1
C2	C3	H3	C4	227.8	240.0
C2	C3	H3	O4	111.4	120.0
C4	C3	H3	O4	243.6	240.0
H3	C3	C4	O3	220.1	120.0
H3	C3	C4	H4	40.0	299.9
H3	C3	O4	HO4	299.4	180.0
O3	C4	C3	O4	99.5	0.0
O3	C4	C3	H3	220.1	120.0
C3	C4	O3	H4	180.0	179.9
H4	C4	C3	O4	279.5	180.0
H4	C4	C3	H3	40.0	299.9
C3	C4	H4	O3	180.0	180.1
HO4	O4	C3	H3	299.4	180.0
H5	C5	C2	H2	69.5	300.0
C2	C5	H5	H5A	120.0	120.0
C2	C5	H5	H5B	240.0	240.0
H5A	C5	H5	H5B	119.9	120.0
H5A	C5	C2	H2	189.5	60.0
C2	C5	H5A	H5	240.0	240.1
C2	C5	H5A	H5B	120.0	120.0
H5	C5	H5A	H5B	240.0	240.0
H5B	C5	C2	H2	309.5	180.0
C2	C5	H5B	H5	120.0	119.9
C2	C5	H5B	H5A	240.0	240.0
H5	C5	H5B	H5A	120.0	120.0
H8	O1	C1	C2	180.0	180.0
H8	O1	C1	O2	42.4	300.0
H8	O1	C1	H9	290.9	60.0
O1	C1	H9	C2	238.7	120.0
O1	C1	H9	O2	121.9	240.0
H9	C1	O1	H8	290.9	60.0
C2	C1	H9	O2	243.2	120.1
H9	C1	C2	C3	118.1	300.0
H9	C1	C2	C5	252.8	60.0
H9	C1	C2	H2	3.2	179.9
H9	C1	O2	H10	291.6	180.0
H10	O2	C1	H9	291.6	180.0