PDB Chemical Component OPB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OPB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C16	C17	1.438	1.381
C16	C15	1.405	1.382
C16	H16	1.103	1.080
C17	C12	1.434	1.389
C17	H17	1.103	1.079
C12	C13	1.443	1.388
C12	N2	1.513	1.398
C13	C14	1.398	1.381
C13	H13	1.103	1.080
C14	C15	1.388	1.383
C14	H14	1.103	1.080
C15	H15	1.103	1.080
C8	C9	1.385	1.387
C8	C7	1.388	1.380
C8	H8	1.103	1.080
C9	C10	1.436	1.388
C9	O9	1.354	1.359
C10	C11	1.442	1.381
C10	H10	1.103	1.080
C11	C6	1.461	1.388
C11	H11	1.104	1.080
C6	C7	1.418	1.389
C6	N1	1.493	1.401
C7	H7	1.103	1.079
C21	C20	1.508	1.530
C21	H211	1.115	1.090
C21	H212	1.115	1.089
C21	H213	1.115	1.089
C20	C19	1.513	1.530
C20	H201	1.115	1.089
C20	H202	1.115	1.090
C19	C18	1.510	1.531
C19	H191	1.116	1.089
C19	H192	1.114	1.089
C18	C4	1.537	1.529
C18	H181	1.115	1.090
C18	H182	1.115	1.089
N2	C3	1.321	1.346
N2	N1	1.445	1.392
C3	C4	1.500	1.514
C3	O3	1.233	1.213
C4	C5	1.490	1.515
C4	H4	1.115	1.089
C5	N1	1.331	1.346
C5	O5	1.221	1.213
O9	H9	0.950	0.966

Bond Angles for OPB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C17	C16	C15	120.7	120.1
C17	C16	H16	120.8	120.0
C16	C17	C12	120.0	119.9
C16	C17	H17	120.1	120.1
C15	C16	H16	118.4	120.0
C16	C15	C14	119.8	120.1
C16	C15	H15	120.7	119.9
C12	C17	H17	119.8	120.0
C17	C12	C13	116.7	119.8
C17	C12	N2	125.5	120.1
C13	C12	N2	117.8	120.1
C12	C13	C14	122.0	119.9
C12	C13	H13	120.7	120.0
C12	N2	C3	125.3	124.2
C12	N2	N1	126.6	124.2
C14	C13	H13	117.4	120.1
C13	C14	C15	120.9	120.1
C13	C14	H14	119.9	120.0
C15	C14	H14	119.2	120.0
C14	C15	H15	119.5	119.9
C9	C8	C7	120.7	120.1
C9	C8	H8	119.5	119.9
C8	C9	C10	120.8	120.0
C8	C9	O9	117.6	120.0
C7	C8	H8	119.8	120.0
C8	C7	C6	122.2	120.0
C8	C7	H7	117.8	120.1
C10	C9	O9	121.6	120.0
C9	C10	C11	119.2	120.0
C9	C10	H10	120.2	119.9
C9	O9	H9	117.6	106.9
C11	C10	H10	120.6	120.0
C10	C11	C6	119.0	120.0
C10	C11	H11	119.8	120.0
C6	C11	H11	121.1	120.0
C11	C6	C7	118.1	120.0
C11	C6	N1	126.2	120.0
C7	C6	N1	115.7	120.0
C6	C7	H7	120.0	120.0
C6	N1	N2	124.6	124.1
C6	N1	C5	124.6	124.2
C20	C21	H211	112.8	109.5
C20	C21	H212	107.8	109.5
C20	C21	H213	112.9	109.5
C21	C20	C19	107.8	109.4
C21	C20	H201	112.9	109.5
C21	C20	H202	112.8	109.5
H211	C21	H212	112.8	109.5
H211	C21	H213	97.6	109.4
H212	C21	H213	112.8	109.5
C19	C20	H201	112.8	109.5
C19	C20	H202	112.8	109.4
C20	C19	C18	106.2	109.5
C20	C19	H191	113.4	109.5
C20	C19	H192	113.4	109.5
H201	C20	H202	97.6	109.5
C18	C19	H191	113.4	109.4
C18	C19	H192	113.4	109.4
C19	C18	C4	120.8	109.5
C19	C18	H181	108.2	109.5
C19	C18	H182	108.2	109.5
H191	C19	H192	97.0	109.5
C4	C18	H181	108.2	109.5
C4	C18	H182	108.2	109.5
C18	C4	C3	99.7	110.5
C18	C4	C5	113.7	110.5
C18	C4	H4	110.5	110.5
H181	C18	H182	101.7	109.4
C3	N2	N1	107.9	111.6
N2	C3	C4	111.8	106.4
N2	C3	O3	126.7	126.8
N2	N1	C5	109.5	111.7
C4	C3	O3	121.5	126.8
C3	C4	C5	100.3	103.9
C3	C4	H4	122.2	110.5
C5	C4	H4	110.1	110.7
C4	C5	N1	110.6	106.3
C4	C5	O5	121.2	126.8
N1	C5	O5	128.2	126.8

Torsion Angles for OPB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C15	C16	C17	H16	180.0	180.1
C17	C16	C15	C14	0.2	360.0
C17	C16	C15	H15	180.2	180.0
C12	C17	C16	H17	180.0	179.9
C16	C17	C12	C13	0.1	0.3
C16	C17	C12	N2	179.8	180.0
C17	C16	C15	H16	180.0	179.9
C15	C16	C17	C12	360.0	0.0
C15	C16	C17	H17	180.0	180.1
C13	C14	C15	C16	359.5	359.7
C16	C15	C14	H14	179.5	180.1
C14	C15	C16	H15	180.0	180.0
C17	C16	H16	C15	180.0	180.1
H16	C16	C17	C12	180.0	180.0
H16	C16	C17	H17	360.0	0.1
H16	C16	C15	C14	180.2	180.0
H16	C16	C15	H15	0.2	0.0
C12	C17	C16	C15	360.0	0.0
C12	C17	C16	H16	180.0	180.0
C16	C17	C12	H17	180.0	180.1
C13	C12	C17	N2	180.4	180.2
C17	C12	C13	C14	359.6	359.4
C17	C12	C13	H13	179.6	180.0
C17	C12	N2	C3	313.5	310.8
C17	C12	N2	N1	140.7	130.7
H17	C17	C16	C15	180.0	180.1
H17	C17	C16	H16	360.0	0.1
C16	C17	H17	C12	180.0	179.9
H17	C17	C12	C13	180.1	180.2
H17	C17	C12	N2	359.8	359.9
C13	C12	C17	H17	180.1	180.2
C17	C12	C13	N2	179.7	179.8
C13	C12	N2	C3	133.1	130.6
C13	C12	N2	N1	320.3	310.5
C14	C13	C12	H13	180.0	179.5
C12	C13	C14	C15	0.6	0.6
C12	C13	C14	H14	180.6	180.2
N2	C12	C17	H17	359.8	359.9
C17	C12	N2	C13	180.4	180.2
N2	C12	C13	C14	179.9	179.7
N2	C12	C13	H13	359.9	0.2
C6	N1	N2	C12	6.7	0.0
C3	N2	C12	N1	172.7	180.1
C12	N2	C3	C4	187.8	179.9
C12	N2	C3	O3	4.1	359.9
C12	N2	N1	C5	173.8	180.0
C16	C15	C14	C13	359.5	359.7
C14	C13	C12	N2	179.9	179.7
C12	C13	C14	H13	180.0	180.5
C15	C14	C13	H14	180.0	180.3
C13	C14	C15	H15	179.5	179.7
H13	C13	C12	N2	359.9	0.2
C12	C13	H13	C14	180.0	179.5
H13	C13	C14	C15	180.6	180.1
H13	C13	C14	H14	0.6	359.7
C14	C15	C16	H16	180.2	180.0
C16	C15	C14	H15	180.0	180.0
C15	C14	C13	H13	180.6	180.1
C13	C14	C15	H14	180.0	179.7
H14	C14	C13	H13	0.6	359.7
C13	C14	H14	C15	180.0	180.3
H14	C14	C15	H15	359.5	0.1
H15	C15	C16	H16	0.2	0.0
C16	C15	H15	C14	180.0	180.0
H15	C15	C14	H14	359.5	0.1
C7	C8	C9	H8	180.0	179.6
C9	C8	C7	C6	0.3	0.6
C9	C8	C7	H7	180.4	180.1
C10	C9	C8	O9	179.9	180.0
C8	C9	C10	C11	0.4	360.0
C8	C9	C10	H10	180.4	180.0
C8	C9	O9	H9	180.0	269.9
C9	C8	C7	H8	180.0	180.4
C7	C8	C9	C10	359.5	359.7
C7	C8	C9	O9	179.6	179.7
C11	C6	C7	C8	359.9	359.4
C8	C7	C6	N1	182.2	179.7
C6	C7	C8	H7	180.0	180.5
C9	C8	H8	C7	180.0	179.6
H8	C8	C9	C10	179.5	180.1
H8	C8	C9	O9	359.7	0.1
H8	C8	C7	C6	180.3	180.2
H8	C8	C7	H7	0.3	359.7
C10	C9	C8	C7	359.5	359.7
C10	C9	C8	H8	179.5	180.1
C8	C9	C10	O9	180.1	180.0
C10	C9	O9	H9	0.1	90.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C6	359.8	0.0
C9	C10	C11	H11	179.8	180.0
O9	C9	C8	C7	179.6	179.7
O9	C9	C8	H8	359.7	0.1
C8	C9	O9	C10	179.9	180.0
O9	C9	C10	C11	180.3	180.0
O9	C9	C10	H10	0.3	360.0
C11	C10	C9	O9	180.3	180.0
C9	C10	C11	H10	180.0	180.0
C6	C11	C10	H11	180.0	180.0
C10	C11	C6	C7	0.1	0.3
C10	C11	C6	N1	177.5	180.0
H10	C10	C9	O9	0.3	360.0
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C6	179.8	180.0
H10	C10	C11	H11	359.8	360.0
C8	C7	C6	C11	359.9	359.4
C6	C11	C10	H10	179.8	180.0
C10	C11	C6	H11	180.0	180.0
C7	C6	C11	N1	182.6	180.3
C11	C6	C7	H7	179.9	179.9
C11	C6	N1	N2	282.7	130.8
C11	C6	N1	C5	117.6	310.8
H11	C11	C10	H10	359.8	360.0
C10	C11	H11	C6	180.0	180.0
H11	C11	C6	C7	180.1	180.3
H11	C11	C6	N1	357.5	360.0
C6	C7	C8	H8	180.3	180.2
C8	C7	C6	H7	180.0	179.5
C7	C6	C11	H11	180.1	180.3
C11	C6	C7	N1	177.7	179.7
C7	C6	N1	N2	100.2	310.4
C7	C6	N1	C5	295.1	130.4
C12	N2	N1	C6	6.7	0.0
N1	C6	C11	H11	357.5	360.0
C11	C6	N1	C7	182.5	180.3
N1	C6	C7	H7	2.2	0.3
C3	N2	N1	C6	192.9	179.9
N2	N1	C6	C5	165.1	180.0
C4	C5	N1	C6	165.3	180.1
C6	N1	C5	O5	347.7	0.1
H7	C7	C8	H8	0.3	359.7
C8	C7	H7	C6	180.0	180.5
H7	C7	C6	N1	2.2	0.3
H211	C21	C20	H212	234.7	239.9
H211	C21	C20	H213	109.5	119.9
H212	C21	C20	H213	234.8	240.0
C19	C20	C21	H201	125.3	240.0
C19	C20	C21	H202	234.7	120.0
C21	C20	C19	C18	181.9	180.0
C21	C20	C19	H191	56.6	300.0
C21	C20	C19	H192	307.1	60.0
H201	C20	C21	H202	109.5	239.9
C20	C21	H211	H212	122.5	120.0
C20	C21	H211	H213	241.2	240.0
H211	C21	C20	C19	54.7	179.9
H211	C21	C20	H201	289.5	299.9
H211	C21	C20	H202	180.0	60.0
H212	C21	H211	H213	118.7	120.0
C20	C21	H212	H211	234.7	240.0
C20	C21	H212	H213	125.3	120.0
H212	C21	C20	C19	180.0	300.0
H212	C21	C20	H201	54.8	60.0
H212	C21	C20	H202	305.3	180.0
H211	C21	H212	H213	250.6	240.1
C20	C21	H213	H211	118.8	120.0
C20	C21	H213	H212	237.5	240.0
H213	C21	C20	C19	305.3	60.0
H213	C21	C20	H201	180.0	180.0
H213	C21	C20	H202	70.5	300.1
H211	C21	H213	H212	118.7	120.0
C19	C20	C21	H211	54.7	179.9
C19	C20	C21	H212	180.0	300.0
C19	C20	C21	H213	305.3	60.0
C21	C20	C19	H201	234.7	120.0
C21	C20	C19	H202	125.3	240.0
H201	C20	C19	H202	250.6	120.0
C18	C19	C20	H191	125.3	240.0
C18	C19	C20	H192	234.7	120.0
C20	C19	C18	C4	165.7	180.0
C20	C19	C18	H181	40.5	300.0
C20	C19	C18	H182	291.0	59.9
H191	C19	C20	H192	109.5	239.9
H201	C20	C21	H211	289.5	299.9
H201	C20	C21	H212	54.8	60.0
H201	C20	C21	H213	180.0	180.0
C21	C20	H201	C19	122.5	240.0
C21	C20	H201	H202	241.2	120.1
C19	C20	H201	H202	118.7	240.0
H201	C20	C19	C18	307.1	60.0
H201	C20	C19	H191	181.9	180.0
H201	C20	C19	H192	72.4	300.0
H202	C20	C21	H211	180.0	60.0
H202	C20	C21	H212	305.3	180.0
H202	C20	C21	H213	70.5	300.1
C21	C20	H202	C19	237.5	120.0
C21	C20	H202	H201	118.8	240.0
C19	C20	H202	H201	241.3	120.0
H202	C20	C19	C18	56.6	300.0
H202	C20	C19	H191	291.3	60.0
H202	C20	C19	H192	181.9	180.0
C18	C19	C20	H201	307.1	60.0
C18	C19	C20	H202	56.6	300.0
C20	C19	C18	H191	234.7	120.0
C20	C19	C18	H192	125.3	240.0
H191	C19	C18	H192	250.5	120.0
C4	C18	C19	H181	125.3	240.0
C4	C18	C19	H182	234.7	120.1
C19	C18	C4	C3	180.5	61.5
C19	C18	C4	C5	286.3	176.0
C19	C18	C4	H4	50.6	298.8
H181	C18	C19	H182	109.5	240.1
H191	C19	C20	H201	181.9	180.0
H191	C19	C20	H202	291.3	60.0
C20	C19	H191	C18	121.3	240.0
C20	C19	H191	H192	240.6	120.1
C18	C19	H191	H192	119.4	240.1
H191	C19	C18	C4	291.0	60.0
H191	C19	C18	H181	165.7	180.0
H191	C19	C18	H182	56.3	299.9
H192	C19	C20	H201	72.4	300.0
H192	C19	C20	H202	181.9	180.0
C20	C19	H192	C18	238.7	120.0
C20	C19	H192	H191	119.4	239.9
C18	C19	H192	H191	240.7	119.9
H192	C19	C18	C4	40.5	300.0
H192	C19	C18	H181	275.2	60.0
H192	C19	C18	H182	165.7	180.0
C4	C18	C19	H191	291.0	60.0
C4	C18	C19	H192	40.5	300.0
C19	C18	C4	H181	234.7	120.0
C19	C18	C4	H182	125.3	240.0
H181	C18	C4	H182	250.6	120.0
N2	C3	C4	C18	113.9	118.6
C18	C4	C3	O3	297.4	298.7
C3	C4	C18	C5	254.2	245.5
C3	C4	C18	H4	129.9	122.7
C5	C4	C18	H4	235.7	237.2
C18	C4	C5	N1	257.1	241.3
C18	C4	C5	O5	74.9	61.3
H181	C18	C19	H191	165.7	180.0
H181	C18	C19	H192	275.2	60.0
C19	C18	H181	C4	132.4	240.0
C19	C18	H181	H182	246.2	120.0
C4	C18	H181	H182	113.8	240.0
H181	C18	C4	C3	305.8	301.5
H181	C18	C4	C5	51.6	56.0
H181	C18	C4	H4	175.9	178.8
H182	C18	C19	H191	56.3	299.9
H182	C18	C19	H192	165.7	180.0
C19	C18	H182	C4	227.6	120.0
C19	C18	H182	H181	113.8	240.0
C4	C18	H182	H181	246.2	120.0
H182	C18	C4	C3	55.2	181.5
H182	C18	C4	C5	161.0	296.0
H182	C18	C4	H4	285.4	58.8
C12	N2	C3	N1	186.1	179.9
C6	N1	N2	C3	192.9	179.9
C18	C4	C3	N2	113.9	118.6
C3	N2	N1	C5	0.0	359.9
C4	C3	N2	O3	183.7	180.1
N2	C3	C4	C5	357.5	0.0
N2	C3	C4	H4	235.7	241.2
C12	N2	N1	C3	173.8	180.1
C6	N1	N2	C5	192.9	180.0
N1	N2	C3	C4	1.7	0.0
N1	N2	C3	O3	178.0	179.9
C4	C5	N1	N2	358.3	0.1
N2	N1	C5	O5	180.7	180.1
C3	C4	C18	H181	305.8	301.5
C3	C4	C18	H182	55.2	181.5
C18	C4	C3	C5	116.4	118.6
C18	C4	C3	H4	238.2	237.4
C4	C3	N2	N1	1.7	0.0
N2	C3	C4	O3	176.5	179.9
C5	C4	C3	H4	121.7	118.8
C3	C4	C5	N1	2.5	360.0
C3	C4	C5	O5	180.3	180.0
O3	C3	N2	N1	178.0	179.9
N2	C3	O3	C4	184.0	180.1
O3	C3	C4	C5	180.9	180.1
O3	C3	C4	H4	59.2	61.3
C6	N1	C5	C4	165.3	180.1
C5	C4	C18	H181	51.6	56.0
C5	C4	C18	H182	161.0	296.0
C18	C4	C5	C3	254.6	241.4
C18	C4	C5	H4	124.6	122.7
N2	N1	C5	C4	358.3	0.1
C5	C4	C3	O3	180.9	180.1
C3	C4	C5	H4	230.0	241.3
N1	C5	C4	O5	182.2	180.0
H4	C4	C18	H181	175.9	178.8
H4	C4	C18	H182	285.4	58.8
C18	C4	H4	C3	116.6	122.7
C18	C4	H4	C5	233.6	237.3
H4	C4	C3	O3	59.2	61.3
C3	C4	H4	C5	117.0	114.6
H4	C4	C5	N1	132.5	118.7
H4	C4	C5	O5	310.3	298.7
C6	N1	C5	N2	167.1	180.0
N1	C5	C4	H4	132.5	118.7
C4	C5	N1	O5	177.6	180.0
O5	C5	C4	H4	310.3	298.7
C4	C5	O5	N1	182.6	180.0