PDB Chemical Component OOO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OOO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C35 C36 1.389 1.383
C35 C34 1.390 1.383
C36 C37 1.392 1.381
C34 C33 1.391 1.382
C37 C32 1.401 1.388
C33 C32 1.405 1.388
C32 O24 1.376 1.358
O24 C21 1.386 1.359
N11 C4 1.405 1.383
C20 C21 1.398 1.389
C20 C19 1.399 1.379
C21 C22 1.395 1.388
C19 C12 1.403 1.394
C4 N5 1.366 1.330
C4 C3 1.414 1.401
N5 C6 1.377 1.320
C22 C23 1.398 1.379
C12 C23 1.403 1.394
C12 C10 1.463 1.483
C3 C10 1.452 1.469
C3 C2 1.435 1.406
C6 N7 1.347 1.316
C10 C9 1.385 1.355
C2 N7 1.372 1.332
C2 N8 1.384 1.369
C9 N8 1.395 1.369
N8 C13 1.490 1.465
C18 C13 1.529 1.530
C18 C17 1.518 1.530
C13 C14 1.533 1.530
C17 C16 1.551 1.530
C14 C15 1.564 1.530
C16 C15 1.553 1.530
C16 N25 1.510 1.469
N25 C27 1.484 1.469
O1 C39 1.433 1.452
O1 C26 1.371 1.342
C27 C28 1.562 1.530
C27 C26 1.542 1.507
C31 C29 1.537 1.530
C29 C28 1.544 1.531
C29 C30 1.534 1.531
C39 C40 1.532 1.530
C26 O38 1.213 1.208
C6 H1 1.080 1.081
C9 H2 1.080 1.080
N11 H3 1.000 0.970
N11 H4 1.000 0.970
C13 H5 1.099 1.090
C14 H6 1.100 1.089
C14 H7 1.100 1.090
C15 H8 1.100 1.090
C15 H9 1.100 1.089
C16 H10 1.100 1.090
C17 H11 1.100 1.090
C17 H12 1.100 1.090
C18 H13 1.100 1.089
C18 H14 1.100 1.091
C19 H15 1.080 1.081
C20 H16 1.080 1.081
C22 H17 1.081 1.080
C23 H18 1.080 1.080
N25 H19 1.000 1.009
C27 H21 1.100 1.090
C28 H22 1.101 1.090
C28 H23 1.100 1.090
C29 H24 1.100 1.089
C30 H25 1.100 1.090
C30 H26 1.100 1.090
C30 H27 1.100 1.091
C31 H28 1.100 1.091
C31 H29 1.100 1.089
C31 H30 1.100 1.090
C33 H31 1.080 1.080
C34 H32 1.080 1.080
C35 H33 1.079 1.080
C36 H34 1.080 1.080
C37 H35 1.080 1.080
C39 H36 1.100 1.090
C39 H37 1.100 1.090
C40 H38 1.100 1.090
C40 H39 1.099 1.091
C40 H40 1.100 1.090

Bond Angles for OOO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C35 C36 C37 121.1 120.1
C36 C35 H33 120.7 120.0
C35 C36 H34 119.5 120.0
C35 C34 H32 119.5 120.0
C37 C36 H34 119.4 120.0
C36 C37 H35 119.7 120.0
C34 C33 H31 119.8 120.0
C20 C21 C22 116.2 120.1
C21 C20 H16 119.1 120.0
C20 C19 H15 118.5 120.1
C21 C22 C23 121.2 120.1
C21 C22 H17 119.4 120.0
C19 C12 C23 113.8 119.8
C4 N5 C6 117.6 121.0
C4 C3 C10 140.5 135.1
C4 C3 C2 111.7 118.8
N5 C6 N7 126.7 122.7
N5 C6 H1 116.6 118.6
C12 C23 C22 123.9 119.9
C23 C22 H17 119.4 120.0
C22 C23 H18 118.1 120.0
C12 C23 H18 118.1 120.0
C10 C3 C2 107.7 106.2
C3 C10 C9 104.7 106.6
C3 C2 N7 128.3 118.5
C3 C2 N8 108.0 107.4
N7 C6 H1 116.6 118.7
C10 C9 H2 123.9 125.2
C9 N8 C13 127.5 124.8
N8 C13 C14 114.9 109.5
N8 C13 H5 109.0 109.4
C18 C13 H5 108.5 109.5
C18 C17 H11 108.0 109.5
C18 C17 H12 108.1 109.5
C13 C14 C15 112.9 109.5
C14 C13 H5 108.5 109.5
C13 C14 H6 108.6 109.5
C13 C14 H7 108.6 109.5
C17 C16 N25 110.8 109.5
C17 C16 H10 107.5 109.5
C15 C14 H6 108.6 109.5
C15 C14 H7 108.6 109.5
C14 C15 H8 108.4 109.4
C14 C15 H9 108.5 109.5
C16 C15 H8 108.4 109.5
C16 C15 H9 108.4 109.5
C16 N25 C27 118.4 111.0
N25 C16 H10 107.9 109.5
C16 N25 H19 107.2 111.0
N25 C27 C28 111.9 109.4
N25 C27 C26 107.2 109.5
C27 N25 H19 107.2 111.0
N25 C27 H21 110.3 109.5
C26 O1 C39 115.9 117.0
O1 C39 C40 111.3 109.5
O1 C39 H36 109.0 109.5
O1 C39 H37 109.0 109.5
O1 C26 O38 118.7 120.0
C28 C27 H21 109.3 109.4
C27 C28 H22 108.3 109.5
C27 C28 H23 108.2 109.4
C27 C26 O38 124.3 120.0
C31 C29 H24 107.8 109.5
C29 C28 H22 108.2 109.5
C29 C28 H23 108.3 109.4
C30 C29 H24 107.8 109.4
C29 C30 H25 109.5 109.4
C29 C30 H26 109.5 109.5
C29 C30 H27 109.5 109.4
C40 C39 H36 109.0 109.5
C40 C39 H37 109.0 109.5
C39 C40 H38 109.5 109.5
C39 C40 H39 109.5 109.4
C39 C40 H40 109.4 109.5
H3 N11 H4 109.4 119.9
H6 C14 H7 109.4 109.4
H8 C15 H9 109.5 109.5
H11 C17 H12 109.4 109.5
H13 C18 H14 109.5 109.5
H22 C28 H23 109.5 109.5
H25 C30 H26 109.5 109.5
H25 C30 H27 109.4 109.5
H26 C30 H27 109.5 109.5
H28 C31 H29 109.5 109.5
H28 C31 H30 109.5 109.5
H29 C31 H30 109.5 109.5
H36 C39 H37 109.4 109.5
H38 C40 H39 109.5 109.5
H38 C40 H40 109.5 109.5
H39 C40 H40 109.5 109.5

Torsion Angles for OOO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C36 C35 C34 H32 180.6 180.1
C37 C36 C35 H34 180.0 179.6
C35 C36 C37 H35 179.8 180.0
C35 C34 C33 H31 179.6 180.0
C37 C36 C35 H33 179.8 180.0
C35 C36 C37 H34 180.0 180.4
O24 C21 C20 H16 359.2 360.0
O24 C21 C22 H17 0.7 0.1
N11 C4 C3 C2 180.6 179.8
C21 C20 C19 H15 180.5 180.0
C20 C21 C22 C23 359.8 359.9
C20 C21 C22 H17 179.8 180.0
C20 C19 C12 C23 359.1 360.0
C22 C21 C20 H16 180.1 180.1
C12 C23 C22 C21 359.7 0.1
C23 C22 C21 H17 180.0 180.0
C21 C22 C23 H18 179.8 180.3
C19 C12 C23 C22 0.8 0.0
C19 C12 C23 H18 180.8 179.7
N5 C4 C3 C10 179.4 179.9
N5 C4 C3 C2 0.2 359.7
C4 N5 C6 N7 359.8 360.0
C4 N5 C6 H1 179.8 179.9
C10 C3 C4 C2 179.2 180.2
C4 C3 C10 C9 180.5 179.7
C4 C3 C2 N7 359.6 0.5
C4 C3 C2 N8 180.0 180.2
N7 C6 N5 H1 180.0 180.0
C21 C22 C23 H17 180.0 180.0
C12 C23 C22 H18 180.0 179.7
C21 C22 C23 C12 359.7 0.1
C12 C23 C22 H17 179.7 180.0
C22 C23 C12 H18 180.0 180.3
C12 C10 C3 C2 180.8 180.0
C12 C10 C9 H2 359.1 0.1
C4 C3 C10 C2 180.8 179.8
C10 C3 C2 N7 180.2 180.3
C10 C3 C2 N8 0.6 0.1
C3 C10 C9 H2 180.0 180.1
C4 C3 C2 C10 179.4 180.2
C2 C3 C10 C9 359.7 359.9
N5 C6 N7 H1 180.0 180.0
C3 C2 N7 C6 0.2 359.5
C9 C10 C3 C2 359.7 359.9
C10 C9 N8 C13 178.5 180.0
C3 C2 N7 N8 180.4 179.6
C2 N7 C6 H1 180.1 180.3
C3 C2 N8 N7 179.7 180.3
C2 N8 C13 H5 26.1 0.1
C3 C10 C9 N8 360.0 0.0
C3 C2 N8 C9 359.4 360.0
C9 N8 C13 C14 86.3 60.1
C9 N8 C13 H5 208.3 180.1
C3 C2 N8 C13 181.2 179.9
C18 C13 N8 H5 116.8 120.0
N8 C13 C14 C15 199.9 300.0
C14 C13 N8 H5 238.0 240.0
N8 C13 C14 H6 320.4 60.0
N8 C13 C14 H7 79.4 180.0
N8 C13 C18 H5 242.8 240.0
C14 C13 C18 H5 118.2 120.0
C18 C13 C14 H6 80.0 180.0
C18 C13 C14 H7 198.9 300.0
C17 C18 C13 H5 307.5 180.0
C18 C17 C16 N25 204.0 180.0
C18 C17 C16 H10 86.2 60.0
H11 C17 C18 H12 241.7 120.1
N8 C13 C14 H5 122.3 119.9
C18 C13 C14 H5 241.8 240.0
C15 C14 C13 H6 239.5 239.9
C15 C14 C13 H7 120.5 120.0
C13 C14 C15 H8 102.4 60.0
C13 C14 C15 H9 221.2 180.0
H6 C14 C13 H7 241.0 240.1
C17 C16 C15 H8 294.1 300.0
C17 C16 C15 H9 175.3 180.0
C17 C16 N25 C27 150.2 278.7
N25 C16 C17 H10 117.7 120.0
C17 C16 N25 H19 271.5 42.6
C15 C14 C13 H5 77.6 180.0
C13 C14 C15 H6 120.5 120.1
C13 C14 C15 H7 239.5 240.0
C16 C15 C14 H8 239.4 240.1
C16 C15 C14 H9 120.6 120.1
H6 C14 C15 H7 118.9 119.9
H8 C15 C14 H9 241.2 240.0
C16 C15 C14 H6 221.2 180.0
C16 C15 C14 H7 102.3 60.1
C14 C15 C16 H8 120.6 119.9
C14 C15 C16 H9 239.4 240.0
H8 C15 C16 H9 118.8 120.1
C17 C16 N25 H10 242.6 240.0
N25 C16 C15 H8 58.5 60.0
N25 C16 C15 H9 299.7 300.0
C16 N25 C27 C28 137.0 158.4
C16 N25 C27 C26 255.9 278.4
C27 N25 C16 H19 238.7 236.0
C16 N25 C27 H21 15.1 38.4
C27 N25 C16 H10 267.7 38.7
C16 N25 C27 H19 121.3 123.9
C28 C27 N25 H21 121.9 120.0
N25 C27 C28 H22 53.9 307.4
N25 C27 C28 H23 172.6 67.4
N25 C27 C26 O38 154.6 360.0
C39 O1 C26 O38 330.4 0.0
C40 C39 O1 H36 239.7 240.0
C40 C39 O1 H37 120.3 120.0
O1 C39 C40 H38 180.0 60.0
O1 C39 C40 H39 300.0 180.0
O1 C39 C40 H40 60.0 300.0
H36 C39 O1 H37 240.6 240.0
N25 C27 C26 O1 334.8 180.0
C26 O1 C39 C40 122.3 180.0
C26 O1 C39 H36 242.6 300.0
C26 O1 C39 H37 2.0 60.0
C27 C26 O1 O38 179.8 180.0
N25 C27 C28 C26 118.1 120.0
C28 C27 N25 H19 15.7 34.5
N25 C27 C28 H21 237.5 240.0
C28 C27 C26 O38 275.6 120.0
C29 C28 C27 H22 239.3 239.9
C29 C28 C27 H23 120.7 120.0
H22 C28 C27 H23 241.4 240.0
N25 C27 C26 C28 239.0 240.0
C26 C27 N25 H19 134.6 154.5
N25 C27 C26 H21 119.7 120.1
C27 C26 O1 C39 150.2 180.0
O1 C26 C27 O38 180.2 180.0
C31 C29 C28 H22 30.4 64.6
C31 C29 C28 H23 271.8 304.6
C30 C29 C31 H24 116.7 240.0
C31 C29 C30 H25 180.0 64.5
C31 C29 C30 H26 300.0 184.5
C31 C29 C30 H27 60.0 304.5
C29 C28 C27 H21 55.8 307.4
C27 C28 C29 H22 120.7 120.1
C27 C28 C29 H23 239.3 240.0
H22 C28 C29 H23 118.6 120.0
C31 C29 C30 H24 243.4 120.0
C30 C29 C28 H22 153.4 304.6
C30 C29 C28 H23 34.7 184.6
H25 C30 C29 H26 240.0 240.0
H25 C30 C29 H27 120.0 120.0
H26 C30 C29 H27 240.0 240.0
O1 C39 C40 H36 120.3 120.0
O1 C39 C40 H37 239.7 240.0
H36 C39 C40 H37 119.4 120.0
H38 C40 C39 H39 240.0 240.0
H38 C40 C39 H40 120.0 120.0
H39 C40 C39 H40 240.0 240.0
O38 C26 O1 C39 330.4 0.0
N5 C6 H1 N7 180.0 180.0
H2 C9 N8 C13 358.5 360.0
N8 C13 H5 C14 234.3 240.0
H5 C13 C14 C15 77.6 180.0
H5 C13 C14 H6 198.2 300.1
H5 C13 C14 H7 317.1 60.0
C13 C14 H6 C15 236.8 239.9
H6 C14 C13 H5 198.2 300.1
C13 C14 H6 H7 118.4 120.0
C15 C14 H6 H7 241.6 240.0
H6 C14 C15 H8 341.8 299.9
H6 C14 C15 H9 100.6 59.9
C13 C14 H7 C15 123.2 120.0
H7 C14 C13 H5 317.1 60.0
C13 C14 H7 H6 241.6 240.0
C15 C14 H7 H6 118.4 120.0
H7 C14 C15 H8 222.9 180.0
H7 C14 C15 H9 341.7 300.0
H8 C15 C14 H6 341.8 299.9
H8 C15 C14 H7 222.9 180.0
C14 C15 H8 H9 118.1 120.0
C16 C15 H8 H9 241.9 239.9
H9 C15 C14 H6 100.6 59.9
H9 C15 C14 H7 341.7 300.0
C14 C15 H9 H8 241.9 240.0
C16 C15 H9 H8 118.1 120.0
C17 C16 H10 N25 119.6 120.0
H10 C16 C15 H8 177.3 180.0
H10 C16 C15 H9 58.6 59.9
H10 C16 N25 C27 267.7 38.7
H10 C16 N25 H19 29.0 162.6
C18 C17 H11 H12 117.4 239.9
H11 C17 C16 N25 83.2 300.0
H11 C17 C16 H10 325.4 180.0
C18 C17 H12 H11 242.6 120.1
H12 C17 C16 N25 324.8 60.0
H12 C17 C16 H10 207.1 300.0
H13 C18 C13 H5 67.8 300.0
H13 C18 C17 H11 332.7 180.0
H13 C18 C17 H12 91.0 59.9
H14 C18 C13 H5 187.2 60.1
H14 C18 C17 H11 213.2 60.0
H14 C18 C17 H12 331.6 300.0
H15 C19 C12 C23 179.1 180.0
H16 C20 C21 C22 180.1 180.1
H16 C20 C19 H15 0.5 360.0
C21 C22 H17 C23 180.0 180.0
H17 C22 C23 H18 359.7 0.3
C12 C23 H18 C22 180.0 180.3
H18 C23 C22 H17 359.7 0.3
C16 N25 H19 C27 231.9 236.1
H19 N25 C16 H10 29.0 162.6
H19 N25 C27 C28 15.7 34.5
H19 N25 C27 C26 134.6 154.5
H19 N25 C27 H21 253.8 274.5
N25 C27 H21 C28 123.5 120.0
N25 C27 H21 C26 242.3 239.9
H21 C27 N25 H19 253.8 274.5
H21 C27 C28 H22 176.5 67.4
H21 C27 C28 H23 295.1 187.4
H21 C27 C26 O38 34.9 239.9
H22 C28 C27 H21 176.5 67.4
C27 C28 H22 H23 117.8 120.0
C29 C28 H22 H23 242.2 240.0
H23 C28 C27 H21 295.1 187.4
C27 C28 H23 H22 242.2 240.0
C29 C28 H23 H22 117.8 120.0
H24 C29 C28 H22 272.1 184.6
H24 C29 C28 H23 153.5 64.6
H24 C29 C30 H25 296.6 304.5
H24 C29 C30 H26 56.6 64.5
H24 C29 C30 H27 176.6 184.5
H25 C30 C29 H24 296.6 304.5
C29 C30 H25 H26 120.0 120.0
C29 C30 H25 H27 240.0 240.1
H26 C30 H25 H27 120.0 120.1
H26 C30 C29 H24 56.6 64.5
C29 C30 H26 H25 240.0 240.0
C29 C30 H26 H27 120.0 120.0
H25 C30 H26 H27 240.0 239.9
H27 C30 C29 H24 176.6 184.5
C29 C30 H27 H25 120.0 120.0
C29 C30 H27 H26 240.0 240.0
H25 C30 H27 H26 120.0 120.0
H28 C31 C29 H24 298.2 300.0
H29 C31 H28 H30 120.0 120.1
H29 C31 C29 H24 58.2 59.9
H28 C31 H29 H30 240.0 240.0
H30 C31 C29 H24 178.2 180.0
H28 C31 H30 H29 120.0 120.0
H32 C34 C33 H31 359.6 359.9
H33 C35 C36 C37 179.8 180.0
H33 C35 C36 H34 359.8 0.4
H33 C35 C34 H32 0.6 359.7
C35 C36 H34 C37 180.0 179.6
H34 C36 C35 H33 359.8 0.4
H34 C36 C37 H35 359.8 359.7
H35 C37 C36 H34 359.8 359.7
O1 C39 H36 C40 238.3 240.0
O1 C39 H36 H37 119.1 120.0
C40 C39 H36 H37 240.9 240.0
H36 C39 C40 H38 59.7 300.0
H36 C39 C40 H39 179.7 60.0
H36 C39 C40 H40 299.7 180.0
O1 C39 H37 C40 121.7 120.0
O1 C39 H37 H36 240.8 239.9
C40 C39 H37 H36 119.1 120.0
H37 C39 C40 H38 300.3 180.0
H37 C39 C40 H39 60.3 300.0
H37 C39 C40 H40 180.3 60.0
H38 C40 C39 H36 59.7 300.0
H38 C40 C39 H37 300.3 180.0
C39 C40 H38 H39 120.0 120.0
C39 C40 H38 H40 240.0 240.0
H39 C40 H38 H40 120.0 120.0
H39 C40 C39 H36 179.7 60.0
H39 C40 C39 H37 60.3 300.0
C39 C40 H39 H38 240.0 240.0
C39 C40 H39 H40 120.0 120.0
H38 C40 H39 H40 240.0 240.0
H40 C40 C39 H36 299.7 180.0
H40 C40 C39 H37 180.3 60.0
C39 C40 H40 H38 120.0 120.0
C39 C40 H40 H39 240.0 240.0
H38 C40 H40 H39 120.0 120.0