PDB Chemical Component ONL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ONL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.493 |
1.469 |
| N |
H |
1.001 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.501 |
1.507 |
| CA |
CB |
1.524 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.234 |
1.208 |
| C |
OXT |
1.259 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| CB |
CG |
1.503 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CG |
CD |
1.511 |
1.507 |
| CG |
HG1 |
1.100 |
1.089 |
| CG |
HG2 |
1.100 |
1.091 |
| CD |
OD |
1.236 |
1.207 |
| CD |
CE |
1.527 |
1.507 |
| CE |
HE1 |
1.100 |
1.089 |
| CE |
HE2 |
1.100 |
1.090 |
| CE |
HE3 |
1.100 |
1.089 |
Bond Angles for ONL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
107.7 |
109.5 |
| N |
CA |
CB |
111.7 |
109.5 |
| N |
CA |
HA |
108.6 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
CB |
107.6 |
109.5 |
| C |
CA |
HA |
112.6 |
109.5 |
| CA |
C |
O |
115.9 |
119.9 |
| CA |
C |
OXT |
118.7 |
120.0 |
| CB |
CA |
HA |
108.7 |
109.4 |
| CA |
CB |
CG |
113.2 |
109.5 |
| CA |
CB |
HB1 |
108.3 |
109.5 |
| CA |
CB |
HB2 |
107.4 |
109.5 |
| O |
C |
OXT |
125.4 |
120.1 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CG |
CB |
HB1 |
108.3 |
109.5 |
| CG |
CB |
HB2 |
107.4 |
109.4 |
| CB |
CG |
CD |
111.5 |
109.5 |
| CB |
CG |
HG1 |
108.8 |
109.5 |
| CB |
CG |
HG2 |
108.3 |
109.4 |
| HB1 |
CB |
HB2 |
112.4 |
109.4 |
| CD |
CG |
HG1 |
108.8 |
109.5 |
| CD |
CG |
HG2 |
108.3 |
109.4 |
| CG |
CD |
OD |
121.0 |
120.0 |
| CG |
CD |
CE |
117.8 |
120.0 |
| HG1 |
CG |
HG2 |
111.1 |
109.5 |
| OD |
CD |
CE |
121.2 |
120.0 |
| CD |
CE |
HE1 |
109.5 |
109.4 |
| CD |
CE |
HE2 |
109.5 |
109.5 |
| CD |
CE |
HE3 |
109.5 |
109.5 |
| HE1 |
CE |
HE2 |
109.5 |
109.5 |
| HE1 |
CE |
HE3 |
109.4 |
109.5 |
| HE2 |
CE |
HE3 |
109.5 |
109.5 |
Torsion Angles for ONL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
CB |
117.9 |
120.1 |
| C |
CA |
N |
HA |
237.8 |
240.0 |
| N |
CA |
C |
O |
164.4 |
340.0 |
| N |
CA |
C |
OXT |
342.1 |
160.0 |
| CB |
CA |
N |
HA |
119.9 |
119.9 |
| N |
CA |
CB |
CG |
44.6 |
295.0 |
| N |
CA |
CB |
HB1 |
164.6 |
55.1 |
| N |
CA |
CB |
HB2 |
286.2 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
C |
334.6 |
296.1 |
| H |
N |
CA |
CB |
216.6 |
176.0 |
| H |
N |
CA |
HA |
96.8 |
56.1 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
C |
94.6 |
60.0 |
| H2 |
N |
CA |
CB |
336.7 |
300.0 |
| H2 |
N |
CA |
HA |
216.8 |
180.0 |
| C |
CA |
N |
H |
334.6 |
296.1 |
| C |
CA |
N |
H2 |
94.6 |
60.0 |
| N |
CA |
C |
CB |
239.5 |
240.0 |
| N |
CA |
C |
HA |
119.7 |
120.0 |
| CB |
CA |
C |
HA |
240.2 |
240.0 |
| C |
CA |
CB |
CG |
286.6 |
175.0 |
| C |
CA |
CB |
HB1 |
46.7 |
295.0 |
| C |
CA |
CB |
HB2 |
168.2 |
55.0 |
| O |
C |
CA |
OXT |
182.3 |
179.9 |
| CA |
C |
OXT |
HXT |
182.6 |
180.0 |
| CB |
CA |
N |
H |
216.6 |
176.0 |
| CB |
CA |
N |
H2 |
336.7 |
300.0 |
| N |
CA |
CB |
C |
118.0 |
120.0 |
| N |
CA |
CB |
HA |
240.2 |
240.0 |
| C |
CA |
CB |
HA |
122.2 |
120.0 |
| CB |
CA |
C |
O |
284.9 |
100.0 |
| CB |
CA |
C |
OXT |
102.6 |
280.0 |
| CG |
CB |
CA |
HB1 |
240.0 |
239.9 |
| CG |
CB |
CA |
HB2 |
118.4 |
120.0 |
| CA |
CB |
CG |
CD |
198.0 |
180.0 |
| CA |
CB |
CG |
HG1 |
318.0 |
300.0 |
| CA |
CB |
CG |
HG2 |
78.9 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
238.4 |
240.1 |
| HA |
CA |
N |
H |
96.8 |
56.1 |
| HA |
CA |
N |
H2 |
216.8 |
180.0 |
| N |
CA |
HA |
C |
240.8 |
240.0 |
| N |
CA |
HA |
CB |
121.7 |
120.0 |
| C |
CA |
HA |
CB |
240.9 |
240.0 |
| HA |
CA |
C |
O |
44.7 |
220.0 |
| HA |
CA |
C |
OXT |
222.4 |
40.0 |
| HA |
CA |
CB |
CG |
164.4 |
54.9 |
| HA |
CA |
CB |
HB1 |
284.4 |
175.0 |
| HA |
CA |
CB |
HB2 |
46.0 |
295.0 |
| O |
C |
CA |
CB |
284.9 |
100.0 |
| O |
C |
CA |
HA |
44.7 |
220.0 |
| CA |
C |
O |
OXT |
177.5 |
180.1 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
102.6 |
280.0 |
| OXT |
C |
CA |
HA |
222.4 |
40.0 |
| CA |
C |
OXT |
O |
182.5 |
179.9 |
| CG |
CB |
CA |
HA |
164.4 |
54.9 |
| CA |
CB |
CG |
HB1 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB2 |
241.6 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
121.6 |
119.9 |
| CD |
CG |
CB |
HG1 |
240.0 |
239.9 |
| CD |
CG |
CB |
HG2 |
119.1 |
119.9 |
| CB |
CG |
CD |
OD |
43.1 |
0.0 |
| CB |
CG |
CD |
CE |
225.2 |
180.0 |
| HG1 |
CG |
CB |
HG2 |
239.1 |
240.0 |
| HB1 |
CB |
CA |
HA |
284.4 |
175.0 |
| CA |
CB |
HB1 |
CG |
237.0 |
239.9 |
| CA |
CB |
HB1 |
HB2 |
118.5 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
241.5 |
240.1 |
| HB1 |
CB |
CG |
CD |
78.0 |
59.9 |
| HB1 |
CB |
CG |
HG1 |
198.0 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
318.9 |
300.0 |
| HB2 |
CB |
CA |
HA |
46.0 |
295.0 |
| CA |
CB |
HB2 |
CG |
122.0 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
241.0 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
119.0 |
120.0 |
| HB2 |
CB |
CG |
CD |
316.4 |
300.0 |
| HB2 |
CB |
CG |
HG1 |
76.4 |
60.1 |
| HB2 |
CB |
CG |
HG2 |
197.3 |
180.0 |
| CD |
CG |
CB |
HB1 |
78.0 |
59.9 |
| CD |
CG |
CB |
HB2 |
316.4 |
300.0 |
| CB |
CG |
CD |
HG1 |
120.0 |
120.1 |
| CB |
CG |
CD |
HG2 |
240.9 |
240.1 |
| HG1 |
CG |
CD |
HG2 |
120.9 |
120.0 |
| OD |
CD |
CG |
CE |
177.9 |
180.0 |
| CG |
CD |
CE |
HE1 |
172.8 |
90.1 |
| CG |
CD |
CE |
HE2 |
292.8 |
210.0 |
| CG |
CD |
CE |
HE3 |
52.8 |
330.0 |
| HG1 |
CG |
CB |
HB1 |
198.0 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
76.4 |
60.1 |
| CB |
CG |
HG1 |
CD |
238.3 |
239.9 |
| CB |
CG |
HG1 |
HG2 |
119.2 |
119.9 |
| CD |
CG |
HG1 |
HG2 |
240.9 |
240.0 |
| HG1 |
CG |
CD |
OD |
283.1 |
240.0 |
| HG1 |
CG |
CD |
CE |
105.2 |
59.9 |
| HG2 |
CG |
CB |
HB1 |
318.9 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
197.3 |
180.0 |
| CB |
CG |
HG2 |
CD |
121.1 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
240.5 |
240.0 |
| CD |
CG |
HG2 |
HG1 |
119.4 |
120.0 |
| HG2 |
CG |
CD |
OD |
162.2 |
120.0 |
| HG2 |
CG |
CD |
CE |
344.4 |
299.9 |
| OD |
CD |
CG |
HG1 |
283.1 |
240.0 |
| OD |
CD |
CG |
HG2 |
162.2 |
120.0 |
| CG |
CD |
OD |
CE |
182.2 |
180.0 |
| OD |
CD |
CE |
HE1 |
354.9 |
270.0 |
| OD |
CD |
CE |
HE2 |
115.0 |
30.0 |
| OD |
CD |
CE |
HE3 |
235.0 |
150.0 |
| CE |
CD |
CG |
HG1 |
105.2 |
59.9 |
| CE |
CD |
CG |
HG2 |
344.4 |
299.9 |
| CG |
CD |
CE |
OD |
177.9 |
180.0 |
| HE1 |
CE |
CD |
HE2 |
240.0 |
240.0 |
| HE1 |
CE |
CD |
HE3 |
120.0 |
120.0 |
| HE2 |
CE |
CD |
HE3 |
240.0 |
240.0 |
| CD |
CE |
HE1 |
HE2 |
120.0 |
120.0 |
| CD |
CE |
HE1 |
HE3 |
240.0 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
120.0 |
120.0 |
| CD |
CE |
HE2 |
HE1 |
240.0 |
240.0 |
| CD |
CE |
HE2 |
HE3 |
120.0 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
240.0 |
239.9 |
| CD |
CE |
HE3 |
HE1 |
120.0 |
120.0 |
| CD |
CE |
HE3 |
HE2 |
240.0 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
120.0 |
120.0 |