PDB Chemical Component ONH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ONH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.257 |
1.208 |
| C |
OXT |
1.276 |
1.342 |
| C |
CA |
1.525 |
1.507 |
| N |
CA |
1.477 |
1.469 |
| N |
HN |
1.000 |
1.009 |
| N |
HNA |
1.000 |
1.008 |
| CB |
CA |
1.530 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.518 |
1.530 |
| CB |
HB |
1.100 |
1.091 |
| CB |
HBA |
1.100 |
1.090 |
| CD |
CG |
1.512 |
1.531 |
| CD |
NE |
1.440 |
1.469 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.089 |
| OZ |
NE |
1.407 |
1.463 |
| CG |
HG |
1.100 |
1.089 |
| CG |
HGA |
1.100 |
1.090 |
| OXT |
HOXT |
0.950 |
0.967 |
| OZ |
HOZ |
0.950 |
0.967 |
| NE |
HNE |
1.000 |
1.009 |
Bond Angles for ONH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
121.5 |
120.0 |
| O |
C |
CA |
118.6 |
120.0 |
| CA |
C |
OXT |
119.9 |
120.0 |
| C |
OXT |
HOXT |
109.5 |
117.0 |
| C |
CA |
N |
112.3 |
109.5 |
| C |
CA |
HA |
106.2 |
109.4 |
| CA |
N |
HN |
109.5 |
111.0 |
| CA |
N |
HNA |
109.5 |
111.0 |
| N |
CA |
HA |
107.5 |
109.5 |
| HN |
N |
HNA |
109.4 |
111.0 |
| CB |
CA |
HA |
108.0 |
109.5 |
| CG |
CB |
HB |
109.0 |
109.5 |
| CG |
CB |
HBA |
108.9 |
109.5 |
| CB |
CG |
CD |
109.2 |
109.5 |
| CB |
CG |
HG |
109.6 |
109.5 |
| CB |
CG |
HGA |
109.6 |
109.5 |
| HB |
CB |
HBA |
110.0 |
109.5 |
| NE |
CD |
CG |
110.4 |
109.5 |
| CG |
CD |
HD |
109.1 |
109.4 |
| CG |
CD |
HDA |
109.1 |
109.5 |
| CD |
CG |
HG |
109.6 |
109.5 |
| CD |
CG |
HGA |
109.6 |
109.4 |
| NE |
CD |
HD |
109.2 |
109.4 |
| NE |
CD |
HDA |
109.2 |
109.5 |
| CD |
NE |
HNE |
107.1 |
111.0 |
| HD |
CD |
HDA |
109.8 |
109.5 |
| OZ |
NE |
HNE |
107.1 |
111.0 |
| HG |
CG |
HGA |
109.4 |
109.5 |
Torsion Angles for ONH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
179.2 |
180.3 |
| O |
C |
OXT |
HOXT |
0.0 |
0.3 |
| O |
C |
CA |
N |
346.6 |
339.7 |
| O |
C |
CA |
HA |
229.4 |
219.7 |
| O |
C |
OXT |
CA |
179.2 |
180.3 |
| OXT |
C |
CA |
N |
165.8 |
160.0 |
| OXT |
C |
CA |
HA |
48.6 |
40.0 |
| O |
C |
CA |
OXT |
180.8 |
179.7 |
| CA |
C |
OXT |
HOXT |
180.8 |
180.0 |
| C |
CA |
N |
HN |
180.0 |
60.0 |
| C |
CA |
N |
HNA |
300.0 |
183.9 |
| N |
CA |
C |
HA |
117.2 |
120.0 |
| CB |
CA |
C |
HA |
242.4 |
240.0 |
| N |
CA |
C |
OXT |
165.8 |
160.0 |
| C |
CA |
N |
HA |
243.6 |
240.0 |
| HN |
N |
CA |
HNA |
240.0 |
236.1 |
| CB |
CA |
N |
HA |
117.7 |
120.0 |
| CA |
N |
HN |
HNA |
120.0 |
123.9 |
| HN |
N |
CA |
HA |
296.4 |
180.0 |
| CA |
N |
HNA |
HN |
240.0 |
236.1 |
| HNA |
N |
CA |
HA |
56.4 |
303.9 |
| CB |
CA |
C |
OXT |
291.0 |
280.0 |
| C |
CA |
CB |
HA |
116.5 |
119.9 |
| CB |
CA |
N |
HN |
54.1 |
300.0 |
| CB |
CA |
N |
HNA |
174.1 |
63.9 |
| N |
CA |
CB |
HA |
242.6 |
240.0 |
| HA |
CA |
C |
OXT |
48.6 |
40.0 |
| C |
CA |
HA |
N |
120.4 |
120.0 |
| HA |
CA |
N |
HN |
296.4 |
180.0 |
| HA |
CA |
N |
HNA |
56.4 |
303.9 |
| CG |
CB |
CA |
HA |
61.2 |
55.1 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| NE |
CD |
CG |
CB |
180.9 |
180.0 |
| CB |
CG |
CD |
HD |
300.9 |
60.0 |
| CB |
CG |
CD |
HDA |
60.9 |
300.0 |
| CD |
CG |
CB |
HG |
240.0 |
240.0 |
| CD |
CG |
CB |
HGA |
120.0 |
119.9 |
| HG |
CG |
CB |
HGA |
240.0 |
240.0 |
| HB |
CB |
CA |
HA |
181.3 |
175.0 |
| CG |
CB |
HB |
HBA |
240.7 |
240.0 |
| HB |
CB |
CG |
CD |
58.9 |
60.0 |
| HB |
CB |
CG |
HG |
178.9 |
180.0 |
| HB |
CB |
CG |
HGA |
298.9 |
300.1 |
| HBA |
CB |
CA |
HA |
301.2 |
295.0 |
| CG |
CB |
HBA |
HB |
119.3 |
120.0 |
| HBA |
CB |
CG |
CD |
298.9 |
300.0 |
| HBA |
CB |
CG |
HG |
58.9 |
60.0 |
| HBA |
CB |
CG |
HGA |
178.9 |
180.1 |
| CD |
CG |
CB |
HB |
58.9 |
60.0 |
| CD |
CG |
CB |
HBA |
298.9 |
300.0 |
| CB |
CG |
CD |
HG |
120.0 |
120.1 |
| CB |
CG |
CD |
HGA |
240.0 |
240.0 |
| NE |
CD |
CG |
HD |
240.0 |
119.9 |
| NE |
CD |
CG |
HDA |
120.0 |
239.9 |
| CG |
CD |
NE |
HNE |
293.0 |
304.0 |
| HD |
CD |
CG |
HDA |
240.0 |
120.0 |
| HG |
CG |
CD |
HGA |
120.0 |
119.9 |
| CB |
CG |
CD |
NE |
180.9 |
180.0 |
| CG |
CD |
NE |
HD |
120.0 |
240.0 |
| CG |
CD |
NE |
HDA |
240.0 |
120.1 |
| NE |
CD |
CG |
HG |
60.9 |
59.9 |
| NE |
CD |
CG |
HGA |
300.9 |
300.0 |
| HD |
CD |
NE |
HDA |
120.0 |
240.0 |
| OZ |
NE |
CD |
HNE |
240.0 |
236.0 |
| NE |
CD |
HD |
CG |
120.8 |
240.0 |
| CG |
CD |
HD |
HDA |
119.6 |
240.0 |
| HD |
CD |
CG |
HG |
180.9 |
300.0 |
| HD |
CD |
CG |
HGA |
60.9 |
180.0 |
| NE |
CD |
HD |
HDA |
240.4 |
120.0 |
| HD |
CD |
NE |
HNE |
173.0 |
63.9 |
| NE |
CD |
HDA |
CG |
239.2 |
120.0 |
| CG |
CD |
HDA |
HD |
240.4 |
120.0 |
| HDA |
CD |
CG |
HG |
300.9 |
180.0 |
| HDA |
CD |
CG |
HGA |
180.9 |
60.0 |
| NE |
CD |
HDA |
HD |
119.6 |
240.0 |
| HDA |
CD |
NE |
HNE |
53.0 |
183.9 |
| OZ |
NE |
CD |
HD |
53.0 |
300.0 |
| OZ |
NE |
CD |
HDA |
293.0 |
59.9 |
| CD |
NE |
OZ |
HNE |
120.0 |
124.0 |
| HG |
CG |
CB |
HB |
178.9 |
180.0 |
| HG |
CG |
CB |
HBA |
58.9 |
60.0 |
| CB |
CG |
HG |
CD |
240.2 |
240.0 |
| CB |
CG |
HG |
HGA |
120.1 |
120.1 |
| HG |
CG |
CD |
HD |
180.9 |
300.0 |
| HG |
CG |
CD |
HDA |
300.9 |
180.0 |
| CD |
CG |
HG |
HGA |
239.9 |
240.1 |
| HGA |
CG |
CB |
HB |
298.9 |
300.1 |
| HGA |
CG |
CB |
HBA |
178.9 |
180.1 |
| CB |
CG |
HGA |
CD |
119.8 |
120.0 |
| CB |
CG |
HGA |
HG |
239.9 |
239.9 |
| HGA |
CG |
CD |
HD |
60.9 |
180.0 |
| HGA |
CG |
CD |
HDA |
180.9 |
60.0 |
| CD |
CG |
HGA |
HG |
120.1 |
119.9 |
| HOZ |
OZ |
NE |
HNE |
60.0 |
56.0 |
| HNE |
NE |
CD |
CG |
293.0 |
304.0 |
| HNE |
NE |
CD |
HD |
173.0 |
63.9 |
| HNE |
NE |
CD |
HDA |
53.0 |
183.9 |