PDB Chemical Component ON9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ON9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C30 C29 1.505 1.508
C28 O5 1.417 1.429
C15 C16 1.407 1.382
C15 C14 1.418 1.382
O5 C2 1.403 1.356
C16 C17 1.418 1.382
O6 C29 1.221 1.213
C29 C1 1.505 1.464
C14 C12 1.405 1.384
C2 C1 1.429 1.405
C2 C3 1.415 1.384
C17 C11 1.400 1.385
C1 C 1.435 1.406
C12 C11 1.400 1.383
C12 C13 1.489 1.514
C3 C4 1.404 1.382
C11 C10 1.492 1.513
C O7 1.392 1.356
C C5 1.418 1.385
O7 C31 1.424 1.429
C13 C9 1.548 1.543
C4 C5 1.409 1.383
C4 C6 1.528 1.507
C10 C9 1.560 1.543
C27 O3 1.417 1.452
C9 C8 1.552 1.530
C8 C7 1.544 1.529
C6 C7 1.591 1.530
C6 O4 1.400 1.429
O3 C26 1.399 1.348
C7 C18 1.574 1.530
C26 C20 1.486 1.471
C26 O2 1.225 1.215
C19 C20 1.399 1.378
C19 N 1.383 1.346
C20 C21 1.444 1.468
N C18 1.481 1.465
N C22 1.397 1.364
C21 C22 1.390 1.344
C21 C23 1.498 1.506
C23 C24 1.539 1.531
C24 C25 1.519 1.507
C25 O 1.218 1.209
C25 O1 1.356 1.342
C30 H1 1.100 1.089
C30 H2 1.100 1.090
C30 H3 1.100 1.089
C31 H4 1.100 1.091
C31 H5 1.099 1.090
C31 H6 1.100 1.090
C28 H7 1.100 1.090
C28 H8 1.100 1.090
C28 H9 1.100 1.089
C27 H10 1.100 1.089
C27 H11 1.100 1.090
C27 H12 1.100 1.090
C23 H13 1.100 1.090
C23 H14 1.100 1.090
C24 H15 1.100 1.090
C24 H16 1.100 1.089
C22 H17 1.081 1.080
C3 H18 1.080 1.081
C6 H19 1.100 1.091
C5 H20 1.080 1.080
C8 H21 1.100 1.091
C8 H22 1.100 1.089
C7 H23 1.100 1.090
O1 H24 0.950 0.967
C9 H25 1.100 1.090
C13 H26 1.100 1.090
C13 H27 1.099 1.090
C10 H28 1.100 1.090
C10 H29 1.100 1.090
C17 H30 1.080 1.079
O4 H31 0.950 0.967
C16 H32 1.080 1.080
C15 H33 1.080 1.079
C14 H34 1.080 1.080
C18 H35 1.100 1.090
C18 H36 1.100 1.090
C19 H37 1.080 1.081

Bond Angles for ON9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C30 C29 C1 116.6 120.0
C29 C30 H1 109.5 109.4
C29 C30 H2 109.5 109.4
C29 C30 H3 109.4 109.4
C28 O5 C2 119.4 117.0
O5 C28 H7 109.5 109.4
O5 C28 H8 109.5 109.5
O5 C28 H9 109.5 109.5
C15 C16 H32 119.7 120.0
C14 C15 H33 119.8 120.0
C15 C14 H34 120.8 119.8
O5 C2 C3 119.3 120.2
C16 C17 H30 120.6 119.9
C29 C1 C 121.3 120.2
C2 C1 C 117.3 119.5
C2 C3 C4 120.9 120.3
C2 C3 H18 119.5 119.8
C1 C O7 118.8 120.2
C1 C C5 121.5 119.7
C12 C13 H26 110.9 110.3
C12 C13 H27 110.9 110.4
C3 C4 C5 119.9 120.6
C3 C4 C6 116.8 119.8
C4 C3 H18 119.6 119.9
C11 C10 C9 104.4 105.2
C11 C10 H28 110.7 110.4
C11 C10 H29 110.7 110.4
C C5 H20 120.1 119.9
O7 C31 H4 109.5 109.5
O7 C31 H5 109.5 109.5
O7 C31 H6 109.5 109.5
C13 C9 H25 109.8 110.8
C4 C5 H20 120.2 119.9
C4 C6 O4 107.9 109.5
C4 C6 H19 107.0 109.4
C10 C9 H25 109.7 111.0
C27 O3 C26 125.3 117.1
O3 C27 H10 109.5 109.5
O3 C27 H11 109.5 109.5
O3 C27 H12 109.5 109.4
C9 C8 H21 106.8 109.4
C9 C8 H22 106.7 109.5
C6 C7 C8 113.0 109.5
C8 C7 C18 111.2 109.5
C7 C8 H21 106.8 109.5
C7 C8 H22 106.8 109.5
C8 C7 H23 107.0 109.5
C7 C6 O4 112.5 109.5
C6 C7 C18 111.9 109.4
C7 C6 H19 106.3 109.5
C6 C7 H23 106.5 109.4
O4 C6 H19 108.6 109.4
C6 O4 H31 109.5 114.0
O3 C26 O2 110.7 119.9
C18 C7 H23 106.7 109.5
C7 C18 H35 107.3 109.5
C7 C18 H36 107.3 109.5
C20 C26 O2 122.5 120.0
C26 C20 C21 126.2 127.0
N C19 H37 125.8 125.9
C20 C21 C22 106.7 106.3
N C18 H35 107.3 109.5
N C18 H36 107.3 109.5
N C22 H17 125.6 125.5
C21 C22 H17 125.6 125.4
C21 C23 H13 108.1 109.5
C21 C23 H14 108.1 109.5
C23 C24 C25 112.4 109.5
C24 C23 H13 108.1 109.5
C24 C23 H14 108.1 109.4
C23 C24 H15 108.7 109.4
C23 C24 H16 108.7 109.5
C24 C25 O 125.5 120.0
C24 C25 O1 119.7 120.0
C25 C24 H15 108.7 109.5
C25 C24 H16 108.7 109.5
O1 C25 O 114.8 120.0
C25 O1 H24 109.5 117.0
H1 C30 H2 109.4 109.5
H1 C30 H3 109.5 109.5
H2 C30 H3 109.5 109.5
H4 C31 H5 109.5 109.4
H4 C31 H6 109.5 109.5
H5 C31 H6 109.5 109.5
H7 C28 H8 109.4 109.5
H7 C28 H9 109.5 109.5
H8 C28 H9 109.5 109.5
H10 C27 H11 109.5 109.5
H10 C27 H12 109.5 109.5
H11 C27 H12 109.4 109.4
H13 C23 H14 109.5 109.5
H15 C24 H16 109.5 109.5
H21 C8 H22 109.5 109.5
H26 C13 H27 109.4 110.3
H28 C10 H29 109.5 110.3
H35 C18 H36 109.5 109.4

Torsion Angles for ON9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C30 C29 C1 C 114.0 274.2
H1 C30 C29 H2 240.0 240.0
H1 C30 C29 H3 120.0 120.0
H2 C30 C29 H3 240.0 240.0
C28 O5 C2 C3 35.4 359.9
H7 C28 O5 H8 240.0 240.0
H7 C28 O5 H9 120.0 120.0
H8 C28 O5 H9 240.0 240.0
C15 C16 C17 H30 179.5 180.0
C14 C15 C16 H32 181.4 179.7
C2 O5 C28 H7 180.0 60.0
C2 O5 C28 H8 300.0 180.0
C2 O5 C28 H9 60.0 300.0
O5 C2 C1 C 181.0 180.2
O5 C2 C3 C4 180.8 180.0
O5 C2 C3 H18 0.8 0.1
O6 C29 C30 H1 0.0 175.0
O6 C29 C30 H2 120.0 295.0
O6 C29 C30 H3 240.0 55.0
O6 C29 C1 C 294.7 94.2
C1 C29 C30 H1 180.8 355.0
C1 C29 C30 H2 300.7 115.0
C1 C29 C30 H3 60.8 235.0
C2 C1 C29 C 177.8 180.3
C29 C1 C O7 357.5 0.0
C29 C1 C C5 176.4 179.8
C14 C12 C13 H26 279.6 43.8
C14 C12 C13 H27 41.5 281.8
C28 O5 C2 C1 214.9 180.0
C29 C1 C2 C 182.1 179.7
C2 C1 C O7 179.7 179.7
C2 C1 C C5 358.5 359.5
C3 C2 C1 C 0.6 0.3
C2 C3 C4 C5 357.7 0.0
C2 C3 C4 C6 174.2 180.0
C4 C3 C2 H18 180.0 179.9
C17 C11 C10 H28 310.8 316.4
C17 C11 C10 H29 72.4 78.6
C1 C C5 H20 180.5 180.3
C12 C11 C10 H28 127.1 136.1
C12 C11 C10 H29 248.7 258.3
C12 C13 C9 H25 143.5 144.8
H26 C13 C12 H27 238.2 122.1
C2 C3 C4 H18 180.0 180.1
C3 C4 C5 H20 181.3 180.0
C3 C4 C6 O4 130.8 145.0
C3 C4 C6 H19 14.0 25.1
C11 C10 C9 H25 221.5 215.3
H28 C10 C11 H29 238.4 237.8
C1 C O7 C5 178.9 179.8
O7 C C5 H20 359.4 0.0
C O7 C31 H4 180.0 60.0
C O7 C31 H5 300.0 180.0
C O7 C31 H6 60.0 300.0
C1 C C5 O7 181.2 180.2
C4 C5 C H20 180.0 180.2
H4 C31 O7 H5 240.0 240.0
H4 C31 O7 H6 120.0 120.0
H5 C31 O7 H6 240.0 240.0
C11 C10 C9 C13 339.0 333.6
C10 C9 C13 H25 242.7 241.6
C13 C9 C8 H21 299.3 65.7
C13 C9 C8 H22 56.3 305.8
C1 C C5 C4 0.5 0.5
C3 C4 C5 C6 176.2 180.0
C5 C4 C3 H18 177.7 179.9
C C5 C4 H20 180.0 179.8
C5 C4 C6 O4 307.0 325.0
C5 C4 C6 H19 190.3 205.0
C3 C4 C6 C5 183.7 180.0
C6 C4 C3 H18 354.2 359.9
C7 C6 C4 O4 125.9 120.0
C4 C6 C7 C18 189.5 180.0
C7 C6 C4 H19 242.6 240.0
C4 C6 C7 H23 305.7 300.0
O4 C6 C4 H19 116.7 119.9
C4 C6 O4 H31 180.0 60.0
C11 C10 C9 H28 119.2 119.0
C11 C10 C9 H29 240.8 241.1
C13 C9 C10 H25 117.4 118.3
C10 C9 C8 H21 183.5 312.7
C10 C9 C8 H22 300.5 192.7
C27 O3 C26 O2 178.7 360.0
H10 C27 O3 H11 240.0 240.0
H10 C27 O3 H12 120.0 120.0
H11 C27 O3 H12 240.0 240.1
C9 C8 C7 C18 112.3 64.5
C7 C8 C9 H21 238.5 119.9
C7 C8 C9 H22 121.5 239.9
C9 C8 C7 H23 356.1 304.5
H21 C8 C9 H22 243.0 120.0
C9 C8 C7 H21 121.5 240.1
C9 C8 C7 H22 238.5 120.0
C8 C7 C6 O4 186.5 180.0
C6 C7 C8 C18 126.9 120.0
C8 C7 C6 H19 305.2 300.0
C6 C7 C8 H23 243.0 240.0
C18 C7 C8 H23 116.2 120.1
C8 C7 C18 H35 192.2 184.1
C8 C7 C18 H36 309.7 304.1
H21 C8 C7 H22 117.0 240.0
C3 C4 C6 C7 256.6 265.0
C4 C6 C7 O4 236.5 240.0
C4 C6 C7 H19 117.8 120.0
C8 C7 C6 C18 233.5 240.0
C6 C7 C8 H21 117.7 304.4
C6 C7 C8 H22 0.7 64.5
C8 C7 C6 H23 117.3 120.0
O4 C6 C7 H19 241.2 240.0
C7 C6 O4 H31 53.0 300.0
C18 C7 C6 H23 243.8 240.0
C6 C7 C18 H35 64.7 64.1
C6 C7 C18 H36 182.3 184.1
C4 C6 O4 H19 244.4 240.1
O4 C6 C7 C8 186.5 180.0
O4 C6 C7 C18 313.0 300.0
C7 C6 O4 H19 117.4 120.0
O4 C6 C7 H23 69.2 60.0
C26 O3 C27 H10 180.0 180.1
C26 O3 C27 H11 300.0 300.1
C26 O3 C27 H12 60.0 60.0
C20 C26 O3 O2 180.8 180.0
C6 C7 C18 C8 232.5 240.0
C18 C7 C8 H21 350.8 184.5
C18 C7 C8 H22 233.8 304.5
C8 C7 C18 H23 243.6 240.0
C18 C7 C6 O4 313.0 300.0
C18 C7 C6 H19 71.7 60.0
C6 C7 C18 H23 116.1 120.0
N C18 C7 H35 238.8 240.0
N C18 C7 H36 121.2 120.0
H35 C18 C7 H36 242.4 240.0
C27 O3 C26 C20 359.6 180.0
O3 C26 C20 O2 179.1 180.0
C26 C20 C21 C22 184.3 180.0
O2 C26 C20 C21 113.5 0.0
C19 N C18 H35 152.8 330.1
C19 N C18 H36 35.3 210.2
C19 N C22 H17 178.9 180.4
C21 C20 C26 O2 113.5 0.0
C20 C21 C22 H17 180.5 179.7
C20 C21 C23 H13 338.1 325.2
C20 C21 C23 H14 96.5 205.3
N C18 C7 H23 187.4 184.1
C7 C18 N H35 121.2 120.0
C7 C18 N H36 238.8 239.9
C18 N C22 H17 353.7 0.0
H35 C18 N H36 117.5 119.9
C21 C22 N H17 180.0 180.0
N C22 C21 H17 180.0 180.0
C22 C21 C23 H13 156.9 145.0
C22 C21 C23 H14 275.3 25.0
C24 C23 C21 H13 239.2 120.0
C24 C23 C21 H14 120.8 240.0
C21 C23 C24 H15 180.9 300.0
C21 C23 C24 H16 300.0 60.0
H13 C23 C21 H14 241.6 120.0
C21 C23 C24 H13 120.8 240.0
C21 C23 C24 H14 239.2 120.0
C23 C24 C25 O 278.5 359.9
C23 C24 C25 O1 99.0 180.0
C25 C24 C23 H15 239.6 240.0
C25 C24 C23 H16 120.4 120.0
H13 C23 C24 H14 118.4 240.0
H15 C24 C23 H16 240.8 240.0
C25 C24 C23 H13 299.7 300.0
C25 C24 C23 H14 181.3 60.0
C23 C24 C25 H15 120.4 119.9
C23 C24 C25 H16 239.6 240.0
O1 C25 C24 O 180.5 180.1
C24 C25 O1 H24 179.6 180.0
H15 C24 C25 H16 119.1 120.1
C24 C25 O O1 180.4 180.1
O C25 C24 H15 158.1 240.0
O C25 C24 H16 38.9 120.0
O C25 O1 H24 0.0 0.1
C24 C25 O1 O 179.6 179.9
O1 C25 C24 H15 338.5 60.1
O1 C25 C24 H16 219.4 300.0
H1 C30 C29 C1 180.8 355.0
C29 C30 H1 H2 120.0 120.0
C29 C30 H1 H3 240.0 240.0
H2 C30 H1 H3 120.0 120.1
H2 C30 C29 C1 300.7 115.0
C29 C30 H2 H1 240.0 240.0
C29 C30 H2 H3 120.0 119.9
H1 C30 H2 H3 240.0 239.9
H3 C30 C29 C1 60.8 235.0
C29 C30 H3 H1 120.0 120.0
C29 C30 H3 H2 240.0 240.1
H1 C30 H3 H2 120.0 120.1
O7 C31 H4 H5 120.0 120.0
O7 C31 H4 H6 240.0 240.0
H5 C31 H4 H6 120.0 120.0
O7 C31 H5 H4 240.0 240.0
O7 C31 H5 H6 120.0 120.0
H4 C31 H5 H6 240.0 240.0
O7 C31 H6 H4 120.0 120.0
O7 C31 H6 H5 240.0 240.0
H4 C31 H6 H5 120.0 119.9
H7 C28 O5 C2 180.0 60.0
O5 C28 H7 H8 120.0 120.0
O5 C28 H7 H9 240.0 240.0
H8 C28 H7 H9 120.0 120.0
H8 C28 O5 C2 300.0 180.0
O5 C28 H8 H7 240.0 240.1
O5 C28 H8 H9 120.0 120.0
H7 C28 H8 H9 240.0 240.0
H9 C28 O5 C2 60.0 300.0
O5 C28 H9 H7 120.0 119.9
O5 C28 H9 H8 240.0 240.0
H7 C28 H9 H8 119.9 120.0
H10 C27 O3 C26 180.0 180.1
O3 C27 H10 H11 120.0 120.0
O3 C27 H10 H12 240.0 240.0
H11 C27 H10 H12 120.0 120.0
H11 C27 O3 C26 300.0 300.1
O3 C27 H11 H10 240.0 239.9
O3 C27 H11 H12 120.0 119.9
H10 C27 H11 H12 240.0 240.0
H12 C27 O3 C26 60.0 60.0
O3 C27 H12 H10 120.0 120.0
O3 C27 H12 H11 240.0 240.0
H10 C27 H12 H11 120.0 120.0
C21 C23 H13 H14 117.5 240.0
H13 C23 C24 C25 299.7 300.0
C24 C23 H13 H14 242.5 119.9
H13 C23 C24 H15 60.1 60.0
H13 C23 C24 H16 179.3 180.0
C21 C23 H14 H13 242.5 120.0
H14 C23 C24 C25 181.3 60.0
C24 C23 H14 H13 117.5 240.0
H14 C23 C24 H15 301.7 180.0
H14 C23 C24 H16 60.9 300.0
C23 C24 H15 C25 237.3 240.0
H15 C24 C23 H13 60.1 60.0
H15 C24 C23 H14 301.7 180.0
C23 C24 H15 H16 118.7 120.0
H15 C24 C25 O 158.1 240.0
H15 C24 C25 O1 338.5 60.1
C25 C24 H15 H16 241.3 240.0
C23 C24 H16 C25 122.7 120.0
H16 C24 C23 H13 179.3 180.0
H16 C24 C23 H14 60.9 300.0
C23 C24 H16 H15 241.3 240.0
H16 C24 C25 O 38.9 120.0
H16 C24 C25 O1 219.4 300.0
C25 C24 H16 H15 118.6 120.0
C2 C3 H18 C4 180.0 179.9
H18 C3 C4 C5 177.7 179.9
H18 C3 C4 C6 354.2 359.9
C4 C6 H19 O4 116.2 120.0
H19 C6 C7 C8 305.2 300.0
C7 C6 H19 O4 238.7 240.0
H19 C6 C7 C18 71.7 60.0
H19 C6 C7 H23 188.0 180.0
H19 C6 O4 H31 295.6 180.0
C9 C8 H21 H22 115.2 240.0
H21 C8 C7 C18 350.8 184.5
C7 C8 H21 H22 244.8 120.1
H21 C8 C7 H23 234.6 64.4
C9 C8 H22 H21 244.8 119.9
H22 C8 C7 C18 233.8 304.5
C7 C8 H22 H21 115.2 240.0
H22 C8 C7 H23 117.6 184.5
C6 C7 H23 C8 121.2 120.0
C8 C7 H23 C18 119.1 120.0
H23 C7 C8 H21 234.6 64.4
H23 C7 C8 H22 117.6 184.5
H23 C7 C6 O4 69.2 60.0
C6 C7 H23 C18 240.3 240.0
H23 C7 C6 H19 188.0 180.0
H23 C7 C18 H35 308.6 304.1
H23 C7 C18 H36 66.1 64.1
H24 O1 C25 O 0.0 0.1
H25 C9 C8 H21 58.7 189.1
H25 C9 C8 H22 175.7 69.2
C12 C13 H26 H27 122.7 237.9
H26 C13 C9 H25 24.4 263.7
C12 C13 H27 H26 237.3 122.1
H27 C13 C9 H25 262.6 25.8
C11 C10 H28 C9 244.7 244.2
C11 C10 H28 H29 122.3 122.2
H28 C10 C9 H25 102.3 96.3
C11 C10 H29 C9 115.3 115.7
C11 C10 H29 H28 237.7 237.8
H29 C10 C9 H25 340.7 334.3
H31 O4 C6 H19 295.6 180.0
H32 C16 C17 H30 359.5 0.1
H33 C15 C16 H32 1.4 359.9
H33 C15 C14 H34 359.9 359.7
H34 C14 C15 H33 359.9 359.7
H35 C18 C7 H23 308.6 304.1
C7 C18 H35 H36 116.2 120.0
N C18 H35 H36 243.9 240.0
H36 C18 C7 H23 66.1 64.1
C7 C18 H36 H35 243.8 240.0
N C18 H36 H35 116.1 120.0