PDB Chemical Component OMZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OMZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.439 |
1.469 |
| CA |
C |
1.543 |
1.507 |
| CA |
CB |
1.564 |
1.531 |
| C |
O |
1.239 |
1.208 |
| C |
OXT |
1.330 |
1.341 |
| CL |
CE1 |
1.726 |
1.736 |
| CB |
OC |
1.410 |
1.429 |
| CB |
CG |
1.515 |
1.507 |
| CG |
CD1 |
1.390 |
1.382 |
| CG |
CD2 |
1.392 |
1.383 |
| CD1 |
CE1 |
1.387 |
1.382 |
| CD2 |
CE2 |
1.378 |
1.382 |
| CE1 |
CZ |
1.385 |
1.388 |
| CE2 |
CZ |
1.391 |
1.387 |
| CZ |
OH |
1.400 |
1.360 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| OC |
HC |
0.950 |
0.967 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.081 |
1.081 |
| OH |
HH |
0.950 |
0.967 |
Bond Angles for OMZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
114.9 |
109.5 |
| N |
CA |
CB |
113.3 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
103.3 |
109.5 |
| C |
CA |
CB |
111.4 |
109.5 |
| CA |
C |
O |
117.5 |
120.0 |
| CA |
C |
OXT |
117.7 |
120.0 |
| C |
CA |
HA |
105.5 |
109.5 |
| CA |
CB |
OC |
107.8 |
109.4 |
| CA |
CB |
CG |
112.5 |
109.5 |
| CB |
CA |
HA |
107.5 |
109.5 |
| CA |
CB |
HB |
109.1 |
109.5 |
| O |
C |
OXT |
124.8 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.1 |
| CL |
CE1 |
CZ |
118.6 |
120.0 |
| OC |
CB |
CG |
111.1 |
109.5 |
| OC |
CB |
HB |
110.6 |
109.5 |
| CB |
OC |
HC |
109.5 |
114.0 |
| CB |
CG |
CD1 |
118.7 |
119.9 |
| CB |
CG |
CD2 |
122.0 |
119.9 |
| CG |
CB |
HB |
105.8 |
109.5 |
| CD1 |
CG |
CD2 |
119.2 |
120.1 |
| CG |
CD1 |
CE1 |
119.9 |
120.0 |
| CG |
CD1 |
HD1 |
120.1 |
120.0 |
| CG |
CD2 |
CE2 |
121.1 |
120.0 |
| CG |
CD2 |
HD2 |
119.5 |
120.0 |
| CD1 |
CE1 |
CZ |
120.4 |
119.9 |
| CE1 |
CD1 |
HD1 |
120.0 |
120.0 |
| CD2 |
CE2 |
CZ |
119.5 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.5 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.3 |
120.0 |
| CE1 |
CZ |
CE2 |
119.9 |
119.9 |
| CE1 |
CZ |
OH |
121.4 |
120.1 |
| CE2 |
CZ |
OH |
118.7 |
120.1 |
| CZ |
CE2 |
HE2 |
120.2 |
120.0 |
| CZ |
OH |
HH |
109.5 |
114.0 |
| H |
N |
H2 |
109.4 |
111.0 |
Torsion Angles for OMZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
230.3 |
240.0 |
| N |
CA |
C |
O |
196.8 |
20.0 |
| N |
CA |
C |
OXT |
16.8 |
200.0 |
| C |
CA |
N |
HA |
114.4 |
120.0 |
| N |
CA |
CB |
OC |
46.1 |
180.0 |
| N |
CA |
CB |
CG |
283.3 |
60.0 |
| CB |
CA |
N |
HA |
244.1 |
240.0 |
| N |
CA |
CB |
HB |
166.3 |
300.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
C |
CB |
130.6 |
120.0 |
| C |
CA |
N |
H |
222.3 |
300.0 |
| C |
CA |
N |
H2 |
342.2 |
63.9 |
| N |
CA |
C |
HA |
247.0 |
240.0 |
| C |
CA |
CB |
OC |
177.6 |
300.0 |
| C |
CA |
CB |
CG |
54.8 |
180.0 |
| CB |
CA |
C |
HA |
116.4 |
120.0 |
| C |
CA |
CB |
HB |
297.7 |
60.0 |
| O |
C |
CA |
OXT |
180.0 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| N |
CA |
CB |
C |
228.5 |
240.0 |
| CB |
CA |
N |
H |
352.0 |
60.0 |
| CB |
CA |
N |
H2 |
111.9 |
183.9 |
| N |
CA |
CB |
HA |
113.4 |
120.0 |
| CB |
CA |
C |
O |
66.2 |
260.0 |
| CB |
CA |
C |
OXT |
246.2 |
80.0 |
| C |
CA |
CB |
HA |
244.9 |
240.0 |
| OC |
CB |
CA |
CG |
122.8 |
120.0 |
| OC |
CB |
CA |
HB |
239.8 |
240.0 |
| CA |
CB |
OC |
HC |
183.6 |
300.0 |
| CA |
CB |
CG |
CD1 |
265.0 |
265.0 |
| CA |
CB |
CG |
CD2 |
81.5 |
84.9 |
| CG |
CB |
CA |
HB |
117.0 |
120.0 |
| O |
C |
CA |
CB |
66.2 |
260.0 |
| CA |
C |
O |
OXT |
180.0 |
179.9 |
| O |
C |
CA |
HA |
309.8 |
140.0 |
| O |
C |
OXT |
HXT |
0.0 |
359.9 |
| OXT |
C |
CA |
CB |
246.2 |
80.0 |
| CA |
C |
OXT |
O |
180.0 |
180.1 |
| OXT |
C |
CA |
HA |
129.9 |
320.0 |
| CD1 |
CE1 |
CL |
CZ |
178.0 |
179.7 |
| CL |
CE1 |
CD1 |
HD1 |
1.5 |
0.3 |
| CL |
CE1 |
CZ |
CE2 |
180.0 |
179.7 |
| CL |
CE1 |
CZ |
OH |
1.8 |
359.7 |
| CA |
CB |
OC |
CG |
236.4 |
240.0 |
| OC |
CB |
CA |
HA |
292.7 |
60.0 |
| CA |
CB |
OC |
HB |
119.2 |
120.0 |
| OC |
CB |
CG |
CD1 |
144.0 |
145.0 |
| OC |
CB |
CG |
CD2 |
320.6 |
324.9 |
| CG |
CB |
OC |
HB |
242.9 |
240.0 |
| CA |
CB |
CG |
OC |
120.9 |
120.0 |
| CG |
CB |
CA |
HA |
169.9 |
300.0 |
| CA |
CB |
CG |
HB |
241.0 |
240.0 |
| OC |
CB |
CG |
HB |
120.0 |
120.0 |
| CG |
CB |
OC |
HC |
307.3 |
60.0 |
| CD1 |
CG |
CB |
CD2 |
183.4 |
180.1 |
| CB |
CG |
CD1 |
CE1 |
175.5 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
355.5 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
184.7 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
4.7 |
0.1 |
| CB |
CG |
CD1 |
CD2 |
176.7 |
179.9 |
| CD1 |
CG |
CB |
HB |
24.0 |
25.0 |
| CD1 |
CG |
CD2 |
CE2 |
1.3 |
359.9 |
| CD1 |
CG |
CD2 |
HD2 |
181.3 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
359.6 |
360.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CB |
CG |
CD2 |
CD1 |
183.4 |
180.1 |
| CD2 |
CG |
CB |
HB |
200.6 |
204.9 |
| CD2 |
CG |
CD1 |
CE1 |
358.8 |
0.1 |
| CD2 |
CG |
CD1 |
HD1 |
178.8 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
0.2 |
0.1 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.9 |
| CG |
CD2 |
CE2 |
HE2 |
180.2 |
180.0 |
| CL |
CE1 |
CD1 |
CZ |
182.0 |
180.3 |
| CE1 |
CD1 |
CG |
CD2 |
358.8 |
0.1 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
179.9 |
| CD1 |
CE1 |
CZ |
CE2 |
2.0 |
0.0 |
| CD1 |
CE1 |
CZ |
OH |
183.7 |
180.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.1 |
| CE1 |
CZ |
CE2 |
CD2 |
358.1 |
360.0 |
| CD2 |
CE2 |
CZ |
OH |
176.4 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.1 |
| CZ |
CE1 |
CD1 |
HD1 |
179.6 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
358.1 |
360.0 |
| CE2 |
CZ |
CE1 |
OH |
178.2 |
180.0 |
| CE1 |
CZ |
CE2 |
HE2 |
178.2 |
180.1 |
| CE1 |
CZ |
OH |
HH |
93.2 |
90.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
OH |
181.7 |
180.0 |
| CE2 |
CZ |
OH |
HH |
274.9 |
270.0 |
| CE1 |
CZ |
OH |
CE2 |
178.3 |
180.0 |
| OH |
CZ |
CE2 |
HE2 |
356.4 |
0.1 |
| H |
N |
CA |
C |
222.3 |
300.0 |
| H |
N |
CA |
CB |
352.0 |
60.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
107.9 |
180.0 |
| H2 |
N |
CA |
C |
342.2 |
63.9 |
| H2 |
N |
CA |
CB |
111.9 |
183.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
227.9 |
303.9 |
| N |
CA |
HA |
C |
121.0 |
120.0 |
| N |
CA |
HA |
CB |
240.0 |
240.0 |
| HA |
CA |
N |
H |
107.9 |
180.0 |
| HA |
CA |
N |
H2 |
227.9 |
303.9 |
| C |
CA |
HA |
CB |
119.0 |
120.0 |
| HA |
CA |
C |
O |
309.8 |
140.0 |
| HA |
CA |
C |
OXT |
129.9 |
320.0 |
| HA |
CA |
CB |
OC |
292.7 |
60.0 |
| HA |
CA |
CB |
CG |
169.9 |
300.0 |
| HA |
CA |
CB |
HB |
52.9 |
180.0 |
| CA |
CB |
HB |
OC |
241.5 |
240.0 |
| CA |
CB |
HB |
CG |
121.2 |
120.0 |
| HB |
CB |
CA |
HA |
52.9 |
180.0 |
| OC |
CB |
HB |
CG |
239.7 |
240.0 |
| HB |
CB |
OC |
HC |
64.4 |
180.0 |
| HB |
CB |
CG |
CD1 |
24.0 |
25.0 |
| HB |
CB |
CG |
CD2 |
200.6 |
204.9 |
| HC |
OC |
CB |
CG |
307.3 |
60.0 |
| HC |
OC |
CB |
HB |
64.4 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
178.8 |
180.0 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
CE1 |
CZ |
179.6 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.9 |
| HD2 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.2 |
359.9 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.1 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.2 |
359.9 |
| HE2 |
CE2 |
CZ |
OH |
356.4 |
0.1 |