PDB Chemical Component OMY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OMY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.496 |
1.468 |
| OCZ |
CZ |
1.406 |
1.359 |
| CZ |
CE2 |
1.397 |
1.387 |
| CZ |
CE1 |
1.434 |
1.389 |
| CE2 |
CD2 |
1.398 |
1.381 |
| CD2 |
CG |
1.416 |
1.383 |
| CG |
CD1 |
1.412 |
1.383 |
| CG |
CB |
1.592 |
1.507 |
| CD1 |
CE1 |
1.423 |
1.382 |
| CE1 |
CL |
1.752 |
1.737 |
| C |
O |
1.236 |
1.208 |
| C |
CA |
1.610 |
1.507 |
| C |
OXT |
1.362 |
1.343 |
| CA |
CB |
1.602 |
1.530 |
| CB |
ODE |
1.534 |
1.429 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.101 |
1.089 |
| OCZ |
HCZ |
0.950 |
0.967 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CD1 |
HD1 |
1.080 |
1.079 |
| CB |
HB |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| ODE |
HDE |
0.950 |
0.967 |
Bond Angles for OMY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
106.0 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
HA |
122.3 |
109.5 |
| OCZ |
CZ |
CE2 |
117.0 |
120.1 |
| OCZ |
CZ |
CE1 |
124.9 |
120.0 |
| CZ |
OCZ |
HCZ |
109.5 |
114.0 |
| CZ |
CE2 |
CD2 |
119.8 |
119.9 |
| CZ |
CE2 |
HE2 |
120.1 |
120.0 |
| CZ |
CE1 |
CL |
120.5 |
120.0 |
| CE2 |
CD2 |
CG |
123.9 |
120.1 |
| CD2 |
CE2 |
HE2 |
120.1 |
120.0 |
| CE2 |
CD2 |
HD2 |
118.1 |
119.9 |
| CD2 |
CG |
CD1 |
116.6 |
120.1 |
| CD2 |
CG |
CB |
119.4 |
120.0 |
| CD1 |
CG |
CB |
123.9 |
120.0 |
| CG |
CD1 |
HD1 |
119.7 |
120.0 |
| CA |
CB |
CG |
99.8 |
109.5 |
| CG |
CB |
ODE |
103.7 |
109.5 |
| CG |
CB |
HB |
121.6 |
109.5 |
| CD1 |
CE1 |
CL |
118.3 |
120.1 |
| C |
CA |
HA |
104.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CA |
CB |
ODE |
116.8 |
109.5 |
| CB |
CA |
HA |
100.5 |
109.4 |
| CA |
CB |
HB |
109.6 |
109.5 |
| ODE |
CB |
HB |
105.9 |
109.4 |
| CB |
ODE |
HDE |
109.5 |
114.0 |
| H |
N |
H2 |
109.5 |
111.0 |
Torsion Angles for OMY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
CG |
309.7 |
304.9 |
| C |
CA |
N |
HA |
244.0 |
240.0 |
| N |
CA |
CB |
ODE |
60.6 |
65.0 |
| CB |
CA |
N |
HA |
113.9 |
120.0 |
| N |
CA |
CB |
HB |
181.0 |
184.9 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| OCZ |
CZ |
CE2 |
CD2 |
180.1 |
180.0 |
| OCZ |
CZ |
CE2 |
HE2 |
0.0 |
359.7 |
| OCZ |
CZ |
CE1 |
CL |
359.9 |
360.0 |
| OCZ |
CZ |
CE2 |
CE1 |
179.9 |
180.0 |
| CE2 |
CZ |
OCZ |
HCZ |
231.2 |
89.9 |
| CZ |
CE2 |
CD2 |
CG |
359.2 |
359.7 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.3 |
| CZ |
CE2 |
CD2 |
HD2 |
179.1 |
179.7 |
| OCZ |
CZ |
CE1 |
CE2 |
180.1 |
180.0 |
| CE1 |
CZ |
OCZ |
HCZ |
51.1 |
269.9 |
| CE1 |
CZ |
CE2 |
CD2 |
0.1 |
0.0 |
| CE1 |
CZ |
CE2 |
HE2 |
180.1 |
179.7 |
| CD1 |
CE1 |
CZ |
CL |
181.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.7 |
| CE2 |
CD2 |
CG |
CD1 |
0.6 |
0.6 |
| CE2 |
CD2 |
CG |
CB |
182.7 |
180.0 |
| CG |
CD2 |
CE2 |
HE2 |
179.2 |
180.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CD1 |
CG |
CD2 |
CB |
177.8 |
180.6 |
| CD2 |
CG |
CD1 |
HD1 |
180.5 |
179.4 |
| CA |
CB |
CG |
CD2 |
96.2 |
85.6 |
| CD2 |
CG |
CB |
ODE |
335.3 |
325.6 |
| CD2 |
CG |
CB |
HB |
216.5 |
205.6 |
| CD2 |
CG |
CD1 |
CB |
182.3 |
179.4 |
| CA |
CB |
CG |
CD1 |
278.5 |
265.0 |
| CD1 |
CG |
CB |
ODE |
157.6 |
145.0 |
| CD1 |
CG |
CB |
HB |
38.8 |
25.0 |
| CG |
CD1 |
CE1 |
CL |
179.9 |
180.3 |
| CD2 |
CG |
CB |
CD1 |
177.7 |
180.6 |
| CB |
CG |
CD1 |
HD1 |
358.2 |
0.0 |
| CA |
CB |
CG |
ODE |
120.9 |
120.0 |
| CG |
CB |
CA |
HA |
77.8 |
65.0 |
| CA |
CB |
CG |
HB |
239.7 |
240.0 |
| ODE |
CB |
CG |
HB |
118.8 |
120.0 |
| CG |
CB |
ODE |
HDE |
50.4 |
60.0 |
| CZ |
CE1 |
CD1 |
CL |
179.0 |
180.0 |
| O |
C |
CA |
HA |
206.8 |
220.0 |
| C |
CA |
N |
H |
261.2 |
60.0 |
| C |
CA |
N |
H2 |
21.3 |
184.0 |
| N |
CA |
C |
HA |
128.2 |
120.1 |
| C |
CA |
CB |
ODE |
304.0 |
305.0 |
| CB |
CA |
C |
HA |
246.7 |
240.0 |
| C |
CA |
CB |
HB |
64.4 |
65.0 |
| OXT |
C |
CA |
HA |
19.0 |
40.0 |
| CB |
CA |
N |
H |
131.1 |
300.0 |
| CB |
CA |
N |
H2 |
251.1 |
64.0 |
| N |
CA |
CB |
HA |
231.9 |
240.0 |
| CD2 |
CG |
CB |
CA |
96.2 |
85.6 |
| CD1 |
CG |
CB |
CA |
278.5 |
265.0 |
| CG |
CB |
CA |
ODE |
249.1 |
240.0 |
| CG |
CB |
CA |
HB |
128.7 |
120.0 |
| C |
CA |
CB |
HA |
115.2 |
120.0 |
| ODE |
CB |
CA |
HB |
239.6 |
240.0 |
| CA |
CB |
ODE |
HDE |
301.8 |
300.0 |
| CA |
CB |
ODE |
CG |
251.4 |
240.0 |
| CG |
CB |
ODE |
HB |
230.9 |
240.0 |
| ODE |
CB |
CA |
HA |
188.7 |
185.0 |
| CA |
CB |
ODE |
HB |
122.3 |
120.0 |
| H |
N |
CA |
CB |
131.1 |
300.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
17.2 |
180.0 |
| H2 |
N |
CA |
CB |
251.1 |
64.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
137.2 |
304.0 |
| N |
CA |
HA |
CB |
116.6 |
120.0 |
| HA |
CA |
N |
H |
17.2 |
180.0 |
| HA |
CA |
N |
H2 |
137.2 |
304.0 |
| HA |
CA |
CB |
CG |
77.8 |
65.0 |
| HA |
CA |
CB |
ODE |
188.7 |
185.0 |
| HA |
CA |
CB |
HB |
309.1 |
305.0 |
| HCZ |
OCZ |
CZ |
CE2 |
231.2 |
89.9 |
| HCZ |
OCZ |
CZ |
CE1 |
51.1 |
269.9 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.3 |
| HE2 |
CE2 |
CD2 |
CG |
179.2 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.2 |
0.1 |
| CE2 |
CD2 |
HD2 |
CG |
180.0 |
179.9 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.2 |
0.1 |
| HD2 |
CD2 |
CG |
CD1 |
180.6 |
180.6 |
| HD2 |
CD2 |
CG |
CB |
2.7 |
360.0 |
| HD1 |
CD1 |
CG |
CB |
358.2 |
0.0 |
| HD1 |
CD1 |
CE1 |
CL |
359.8 |
0.3 |
| CA |
CB |
HB |
CG |
115.5 |
120.0 |
| CG |
CB |
HB |
ODE |
117.7 |
120.0 |
| CA |
CB |
HB |
ODE |
233.2 |
240.0 |
| HB |
CB |
CA |
HA |
309.1 |
305.0 |
| HB |
CB |
ODE |
HDE |
179.5 |
180.0 |
| HDE |
ODE |
CB |
HB |
179.5 |
180.0 |