PDB Chemical Component OMX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OMX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.441 |
1.469 |
| CA |
C |
1.517 |
1.507 |
| CA |
CB |
1.560 |
1.529 |
| C |
O |
1.233 |
1.208 |
| C |
OXT |
1.326 |
1.342 |
| CB |
OC |
1.414 |
1.430 |
| CB |
CG |
1.512 |
1.507 |
| CG |
CD1 |
1.394 |
1.383 |
| CG |
CD2 |
1.376 |
1.383 |
| CD1 |
CE1 |
1.379 |
1.382 |
| CD2 |
CE2 |
1.357 |
1.381 |
| CE1 |
CZ |
1.378 |
1.387 |
| CE2 |
CZ |
1.388 |
1.387 |
| CZ |
OH |
1.406 |
1.359 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.091 |
| CB |
HB |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| OC |
HC |
0.950 |
0.967 |
| CD1 |
HD1 |
1.080 |
1.079 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
| OH |
HH |
0.950 |
0.967 |
Bond Angles for OMX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
110.3 |
109.5 |
| N |
CA |
CB |
110.4 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
HA |
107.5 |
109.4 |
| C |
CA |
CB |
115.6 |
109.5 |
| CA |
C |
O |
122.2 |
120.0 |
| CA |
C |
OXT |
115.9 |
120.0 |
| C |
CA |
HA |
106.5 |
109.4 |
| CA |
CB |
OC |
105.5 |
109.4 |
| CA |
CB |
CG |
107.9 |
109.5 |
| CB |
CA |
HA |
106.1 |
109.5 |
| CA |
CB |
HB |
108.7 |
109.5 |
| O |
C |
OXT |
121.6 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| OC |
CB |
CG |
114.6 |
109.5 |
| OC |
CB |
HB |
110.7 |
109.5 |
| CB |
OC |
HC |
109.5 |
114.0 |
| CB |
CG |
CD1 |
120.2 |
119.9 |
| CB |
CG |
CD2 |
120.1 |
120.0 |
| CG |
CB |
HB |
109.3 |
109.5 |
| CD1 |
CG |
CD2 |
118.9 |
120.1 |
| CG |
CD1 |
CE1 |
120.7 |
120.0 |
| CG |
CD1 |
HD1 |
119.7 |
120.0 |
| CG |
CD2 |
CE2 |
121.0 |
120.1 |
| CG |
CD2 |
HD2 |
119.5 |
120.0 |
| CD1 |
CE1 |
CZ |
118.6 |
119.9 |
| CE1 |
CD1 |
HD1 |
119.7 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.7 |
120.0 |
| CD2 |
CE2 |
CZ |
119.6 |
119.9 |
| CE2 |
CD2 |
HD2 |
119.5 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.2 |
120.1 |
| CE1 |
CZ |
CE2 |
120.7 |
119.9 |
| CE1 |
CZ |
OH |
118.6 |
120.0 |
| CZ |
CE1 |
HE1 |
120.7 |
120.1 |
| CE2 |
CZ |
OH |
120.5 |
120.1 |
| CZ |
CE2 |
HE2 |
120.2 |
120.0 |
| CZ |
OH |
HH |
109.5 |
114.0 |
| H |
N |
H2 |
109.5 |
111.0 |
Torsion Angles for OMX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
129.0 |
120.1 |
| N |
CA |
C |
O |
334.6 |
340.0 |
| N |
CA |
C |
OXT |
149.0 |
160.0 |
| C |
CA |
N |
HA |
244.3 |
240.1 |
| N |
CA |
CB |
OC |
66.8 |
65.0 |
| N |
CA |
CB |
CG |
303.8 |
305.0 |
| CB |
CA |
N |
HA |
115.3 |
120.0 |
| N |
CA |
CB |
HB |
185.5 |
185.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
C |
CB |
233.9 |
239.9 |
| C |
CA |
N |
H |
180.0 |
296.1 |
| C |
CA |
N |
H2 |
300.0 |
60.1 |
| N |
CA |
C |
HA |
116.3 |
119.9 |
| C |
CA |
CB |
OC |
300.7 |
305.0 |
| C |
CA |
CB |
CG |
177.8 |
185.0 |
| CB |
CA |
C |
HA |
242.4 |
240.0 |
| C |
CA |
CB |
HB |
59.4 |
65.0 |
| O |
C |
CA |
OXT |
185.6 |
180.0 |
| CA |
C |
OXT |
HXT |
185.5 |
180.0 |
| N |
CA |
CB |
C |
126.1 |
120.0 |
| CB |
CA |
N |
H |
50.9 |
176.0 |
| CB |
CA |
N |
H2 |
171.0 |
300.0 |
| N |
CA |
CB |
HA |
243.9 |
240.0 |
| CB |
CA |
C |
O |
100.7 |
100.0 |
| CB |
CA |
C |
OXT |
275.1 |
280.0 |
| C |
CA |
CB |
HA |
117.8 |
120.0 |
| OC |
CB |
CA |
CG |
122.9 |
120.0 |
| OC |
CB |
CA |
HB |
241.3 |
240.0 |
| CA |
CB |
OC |
HC |
180.0 |
300.0 |
| CA |
CB |
CG |
CD1 |
88.2 |
265.0 |
| CA |
CB |
CG |
CD2 |
278.0 |
84.7 |
| CG |
CB |
CA |
HB |
118.4 |
120.0 |
| O |
C |
CA |
CB |
100.7 |
100.0 |
| CA |
C |
O |
OXT |
174.1 |
180.0 |
| O |
C |
CA |
HA |
218.3 |
220.1 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| OXT |
C |
CA |
CB |
275.1 |
280.0 |
| CA |
C |
OXT |
O |
185.5 |
180.0 |
| OXT |
C |
CA |
HA |
32.7 |
40.0 |
| CA |
CB |
OC |
CG |
241.5 |
240.0 |
| OC |
CB |
CA |
HA |
182.9 |
185.0 |
| CA |
CB |
OC |
HB |
117.4 |
120.0 |
| OC |
CB |
CG |
CD1 |
331.1 |
145.0 |
| OC |
CB |
CG |
CD2 |
160.9 |
324.8 |
| CG |
CB |
OC |
HB |
235.9 |
240.0 |
| CA |
CB |
CG |
OC |
117.1 |
120.0 |
| CG |
CB |
CA |
HA |
60.0 |
65.0 |
| CA |
CB |
CG |
HB |
242.0 |
240.0 |
| OC |
CB |
CG |
HB |
124.9 |
120.0 |
| CG |
CB |
OC |
HC |
298.5 |
60.0 |
| CD1 |
CG |
CB |
CD2 |
170.2 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
191.1 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
11.1 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
168.9 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
348.9 |
360.0 |
| CB |
CG |
CD1 |
CD2 |
189.7 |
179.8 |
| CD1 |
CG |
CB |
HB |
206.2 |
25.0 |
| CD1 |
CG |
CD2 |
CE2 |
358.7 |
359.8 |
| CD1 |
CG |
CD2 |
HD2 |
178.7 |
179.8 |
| CG |
CD1 |
CE1 |
CZ |
2.8 |
360.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
HE1 |
182.8 |
180.0 |
| CB |
CG |
CD2 |
CD1 |
170.3 |
180.2 |
| CD2 |
CG |
CB |
HB |
36.0 |
204.8 |
| CD2 |
CG |
CD1 |
CE1 |
1.4 |
0.2 |
| CD2 |
CG |
CD1 |
HD1 |
181.4 |
180.3 |
| CG |
CD2 |
CE2 |
CZ |
357.0 |
359.9 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
HE2 |
177.0 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
1.4 |
0.2 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
352.8 |
359.8 |
| CD1 |
CE1 |
CZ |
OH |
176.8 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
7.4 |
0.3 |
| CD2 |
CE2 |
CZ |
OH |
183.3 |
180.1 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HD1 |
182.8 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
7.4 |
0.3 |
| CE2 |
CZ |
CE1 |
OH |
176.0 |
179.8 |
| CE1 |
CZ |
CE2 |
HE2 |
187.4 |
180.2 |
| CE1 |
CZ |
OH |
HH |
180.0 |
90.0 |
| CZ |
CE2 |
CD2 |
HD2 |
177.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
184.1 |
180.2 |
| CE2 |
CZ |
CE1 |
HE1 |
172.8 |
179.8 |
| CE2 |
CZ |
OH |
HH |
4.0 |
270.2 |
| CE1 |
CZ |
OH |
CE2 |
176.0 |
179.8 |
| OH |
CZ |
CE1 |
HE1 |
356.8 |
360.0 |
| OH |
CZ |
CE2 |
HE2 |
3.3 |
0.0 |
| H |
N |
CA |
C |
180.0 |
296.1 |
| H |
N |
CA |
CB |
50.9 |
176.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
295.7 |
56.0 |
| H2 |
N |
CA |
C |
300.0 |
60.1 |
| H2 |
N |
CA |
CB |
171.0 |
300.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
55.7 |
180.0 |
| N |
CA |
HA |
C |
241.8 |
240.1 |
| N |
CA |
HA |
CB |
118.1 |
120.0 |
| HA |
CA |
N |
H |
295.7 |
56.0 |
| HA |
CA |
N |
H2 |
55.7 |
180.0 |
| C |
CA |
HA |
CB |
236.3 |
240.0 |
| HA |
CA |
C |
O |
218.3 |
220.1 |
| HA |
CA |
C |
OXT |
32.7 |
40.0 |
| HA |
CA |
CB |
OC |
182.9 |
185.0 |
| HA |
CA |
CB |
CG |
60.0 |
65.0 |
| HA |
CA |
CB |
HB |
301.6 |
305.0 |
| CA |
CB |
HB |
OC |
244.6 |
240.1 |
| CA |
CB |
HB |
CG |
117.5 |
120.0 |
| HB |
CB |
CA |
HA |
301.6 |
305.0 |
| OC |
CB |
HB |
CG |
232.9 |
240.0 |
| HB |
CB |
OC |
HC |
62.6 |
180.0 |
| HB |
CB |
CG |
CD1 |
206.2 |
25.0 |
| HB |
CB |
CG |
CD2 |
36.0 |
204.8 |
| HC |
OC |
CB |
CG |
298.5 |
60.0 |
| HC |
OC |
CB |
HB |
62.6 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
181.4 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
182.8 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
2.9 |
359.9 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
177.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
357.0 |
0.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
2.9 |
359.9 |
| HE1 |
CE1 |
CZ |
CE2 |
172.8 |
179.8 |
| HE1 |
CE1 |
CZ |
OH |
356.8 |
360.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
357.0 |
0.0 |
| HE2 |
CE2 |
CZ |
OH |
3.3 |
0.0 |