PDB Chemical Component OMU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OMU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.385 1.345
N1 C6 1.369 1.369
N1 C1' 1.483 1.464
C2 N3 1.379 1.346
C2 O2 1.226 1.216
N3 C4 1.377 1.349
N3 HN3 1.020 0.970
C4 C5 1.430 1.414
C4 O4 1.214 1.218
C5 C6 1.364 1.350
C5 H5 1.104 1.080
C6 H6 1.104 1.079
C1' C2' 1.494 1.549
C1' O4' 1.449 1.443
C1' H1' 1.114 1.090
C2' O2' 1.440 1.429
C2' C3' 1.494 1.547
C2' H2' 1.115 1.090
O2' CM2 1.387 1.429
CM2 HM21 1.114 1.090
CM2 HM22 1.115 1.090
CM2 HM23 1.116 1.089
C3' C4' 1.509 1.540
C3' O3' 1.430 1.429
C3' H3' 1.116 1.091
C4' O4' 1.444 1.438
C4' C5' 1.529 1.529
C4' H4' 1.114 1.089
O3' HO3' 0.950 0.967
C5' O5' 1.431 1.429
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.089
O5' P 1.614 1.609
P OP1 1.481 1.480
P OP2 1.482 1.609
P OP3 1.618 1.609
OP2 HOP2 0.949 0.968
OP3 HOP3 0.949 0.966

Bond Angles for OMU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.4 120.6
C2 N1 C1' 117.4 119.7
N1 C2 N3 116.1 121.0
N1 C2 O2 122.3 119.5
C6 N1 C1' 121.2 119.7
N1 C6 C5 121.0 119.7
N1 C6 H6 119.7 120.2
N1 C1' C2' 110.8 110.8
N1 C1' O4' 111.5 110.6
N1 C1' H1' 106.3 110.5
N3 C2 O2 121.6 119.5
C2 N3 C4 126.1 120.2
C2 N3 HN3 117.1 119.9
C4 N3 HN3 116.8 119.9
N3 C4 C5 114.7 119.4
N3 C4 O4 120.8 120.3
C5 C4 O4 124.5 120.3
C4 C5 C6 120.8 119.1
C4 C5 H5 122.0 120.5
C6 C5 H5 117.2 120.4
C5 C6 H6 119.3 120.1
C2' C1' O4' 107.1 103.5
C2' C1' H1' 110.8 110.6
C1' C2' O2' 111.0 110.9
C1' C2' C3' 103.7 102.2
C1' C2' H2' 112.8 110.9
O4' C1' H1' 110.2 110.6
C1' O4' C4' 108.5 107.0
O2' C2' C3' 111.1 110.9
O2' C2' H2' 105.7 110.8
C2' O2' CM2 108.7 106.8
C3' C2' H2' 112.7 110.9
C2' C3' C4' 103.0 104.2
C2' C3' O3' 112.5 110.5
C2' C3' H3' 112.9 110.5
O2' CM2 HM21 108.8 109.5
O2' CM2 HM22 112.5 109.5
O2' CM2 HM23 112.4 109.5
HM21 CM2 HM22 112.5 109.4
HM21 CM2 HM23 112.4 109.5
HM22 CM2 HM23 97.9 109.5
C4' C3' O3' 112.5 110.6
C4' C3' H3' 112.8 110.5
C3' C4' O4' 106.0 107.3
C3' C4' C5' 111.7 109.9
C3' C4' H4' 111.3 109.9
O3' C3' H3' 103.5 110.4
C3' O3' HO3' 112.5 106.8
O4' C4' C5' 112.2 110.0
O4' C4' H4' 110.9 109.8
C5' C4' H4' 104.9 109.9
C4' C5' O5' 112.6 109.5
C4' C5' H5' 111.1 109.5
C4' C5' H5'' 111.1 109.5
O5' C5' H5' 111.1 109.4
O5' C5' H5'' 111.0 109.5
C5' O5' P 119.8 106.8
H5' C5' H5'' 99.3 109.5
O5' P OP1 108.3 109.5
O5' P OP2 108.1 109.5
O5' P OP3 103.1 109.5
OP1 P OP2 119.8 109.4
OP1 P OP3 107.9 109.5
OP2 P OP3 108.4 109.5
P OP2 HOP2 108.1 106.9
P OP3 HOP3 103.0 106.8

Torsion Angles for OMU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 179.8 179.7
C2 N1 C6 C5 359.9 0.3
C2 N1 C6 H6 179.9 180.3
C2 N1 C1' C2' 82.3 304.1
C2 N1 C1' O4' 201.6 58.3
C2 N1 C1' H1' 321.7 181.1
N3 C2 N1 O2 180.9 179.4
N1 C2 N3 C4 0.2 0.6
N1 C2 N3 HN3 180.1 180.3
C2 N1 C6 C1' 180.2 180.3
C6 N1 C2 N3 359.8 359.4
C6 N1 C2 O2 178.9 180.0
C6 N1 C1' C2' 262.5 124.4
C6 N1 C1' O4' 21.8 238.6
C6 N1 C1' H1' 142.0 1.4
C4 C5 C6 N1 0.4 360.0
N1 C6 C5 H5 180.4 179.9
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 179.8 179.7
C1' N1 C2 N3 180.1 179.7
C1' N1 C2 O2 359.1 0.3
C1' N1 C6 C5 179.7 180.0
C1' N1 C6 H6 359.7 0.0
C2' C1' N1 O4' 240.7 245.8
C2' C1' N1 H1' 120.6 123.0
N1 C1' C2' O2' 216.1 273.8
N1 C1' C2' C3' 96.8 155.6
N1 C1' C2' H2' 334.5 37.3
O4' C1' N1 H1' 239.8 237.2
N1 C1' O4' C4' 244.5 201.3
N3 C2 N1 C6 359.8 359.4
N3 C2 N1 C1' 180.1 179.7
N1 C2 N3 O2 179.1 180.6
C4 N3 C2 HN3 180.0 180.3
C2 N3 C4 C5 0.1 359.7
C2 N3 C4 O4 180.5 179.7
O2 C2 N1 C6 178.9 180.0
O2 C2 N1 C1' 359.1 0.3
N1 C2 O2 N3 181.0 179.4
O2 C2 N3 C4 181.1 180.0
O2 C2 N3 HN3 1.1 359.7
C4 N3 C2 O2 181.1 180.0
C2 N3 C4 HN3 180.0 179.7
C5 C4 N3 O4 179.6 180.0
N3 C4 C5 C6 359.7 0.0
N3 C4 C5 H5 179.6 180.1
HN3 N3 C2 O2 1.1 359.7
C2 N3 HN3 C4 180.0 180.3
HN3 N3 C4 C5 180.1 180.0
HN3 N3 C4 O4 0.5 0.0
N1 C6 C5 C4 0.4 360.0
C5 C4 N3 HN3 180.1 180.0
N3 C4 C5 O4 180.5 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 H6 180.3 180.0
O4 C4 N3 HN3 0.5 0.0
N3 C4 O4 C5 179.5 180.0
O4 C4 C5 C6 179.2 180.0
O4 C4 C5 H5 359.2 0.0
C5 C6 N1 C1' 179.7 180.0
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 O4 179.2 180.0
C4 C5 C6 H5 180.0 180.0
H5 C5 C4 O4 359.2 0.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 H6 0.3 359.9
H6 C6 N1 C1' 359.7 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 0.3 359.9
N1 C1' C2' O4' 121.9 118.6
N1 C1' C2' H1' 242.2 237.0
O4' C1' C2' H1' 120.3 118.4
C2' C1' O4' C4' 5.9 320.0
O2' C2' C1' C3' 119.3 118.2
O2' C2' C1' H2' 241.6 236.5
C1' C2' O2' CM2 78.2 152.9
C3' C2' C1' H2' 122.3 118.2
C1' C2' C3' C4' 33.7 339.1
C1' C2' C3' O3' 155.1 98.0
C1' C2' C3' H3' 271.7 220.4
N1 C1' O4' C2' 238.5 241.3
N1 C1' O4' H1' 117.9 122.8
C2' C1' O4' H1' 239.3 241.5
O4' C1' C2' O2' 94.2 155.2
O4' C1' C2' C3' 334.9 37.0
O4' C1' C2' H2' 212.6 278.7
C3' C4' O4' C1' 15.6 26.4
C1' O4' C4' C5' 137.8 146.0
C1' O4' C4' H4' 254.7 267.0
N1 C1' H1' C2' 120.6 123.1
N1 C1' H1' O4' 239.0 237.2
C2' C1' H1' O4' 118.4 114.0
H1' C1' C2' O2' 333.9 36.8
H1' C1' C2' C3' 214.6 278.6
H1' C1' C2' H2' 92.3 160.3
H1' C1' O4' C4' 126.6 78.5
O2' C2' C1' O4' 94.2 155.2
O2' C2' C1' H1' 333.9 36.8
C1' C2' O2' C3' 245.2 247.2
C1' C2' O2' H2' 122.6 123.6
C3' C2' O2' H2' 237.5 236.4
O2' C2' C3' C4' 274.4 220.9
O2' C2' C3' O3' 35.8 339.8
O2' C2' C3' H3' 152.4 102.2
C2' O2' CM2 HM21 180.0 180.0
C2' O2' CM2 HM22 305.3 300.0
C2' O2' CM2 HM23 54.8 60.0
C3' C2' C1' O4' 334.9 37.0
C3' C2' C1' H1' 214.6 278.6
C1' C2' C3' O2' 119.3 118.2
C1' C2' C3' H2' 237.7 241.7
O2' C2' C3' H2' 118.4 123.5
C3' C2' O2' CM2 193.1 265.7
C4' C3' C2' O3' 238.7 241.1
C4' C3' C2' H3' 122.0 118.7
C2' C3' C4' O4' 329.2 358.0
C2' C3' C4' C5' 206.7 238.4
C2' C3' C4' H4' 89.8 117.4
O3' C3' C2' H3' 243.4 237.5
C2' C3' O3' HO3' 180.0 180.0
H2' C2' C1' O4' 212.6 278.7
H2' C2' C1' H1' 92.3 160.3
C1' C2' H2' O2' 238.5 236.4
C1' C2' H2' C3' 117.0 112.8
O2' C2' H2' C3' 238.5 236.4
H2' C2' O2' CM2 315.6 29.3
H2' C2' C3' C4' 156.0 97.4
H2' C2' C3' O3' 277.4 216.2
H2' C2' C3' H3' 34.0 338.7
CM2 O2' C2' C3' 193.1 265.7
CM2 O2' C2' H2' 315.6 29.3
HM21 CM2 O2' HM22 234.6 240.1
HM21 CM2 O2' HM23 125.2 120.1
HM22 CM2 O2' HM23 250.6 240.0
O2' CM2 HM21 HM22 125.3 120.0
O2' CM2 HM21 HM23 234.8 239.9
HM22 CM2 HM21 HM23 109.5 120.0
O2' CM2 HM22 HM21 236.7 240.0
O2' CM2 HM22 HM23 118.4 120.0
HM21 CM2 HM22 HM23 241.6 240.0
O2' CM2 HM23 HM21 123.2 120.1
O2' CM2 HM23 HM22 241.6 240.0
HM21 CM2 HM23 HM22 118.4 119.9
C1' O4' C4' C3' 15.6 26.4
C4' C3' C2' H2' 156.0 97.4
C2' C3' C4' O3' 121.3 118.8
C2' C3' C4' H3' 238.0 241.3
O3' C3' C4' H3' 116.6 122.5
C4' C3' O3' HO3' 295.8 294.9
O4' C4' C3' C5' 122.5 119.6
O4' C4' C3' H4' 239.4 240.6
C5' C4' C3' H4' 116.9 121.0
C3' C4' C5' O5' 53.6 180.0
C3' C4' C5' H5' 178.9 300.0
C3' C4' C5' H5'' 288.4 60.0
O3' C3' C2' H2' 277.4 216.2
C2' C3' O3' C4' 244.2 245.1
C2' C3' O3' H3' 122.1 122.5
C4' C3' O3' H3' 237.9 237.4
O3' C3' C4' O4' 207.9 239.2
O3' C3' C4' C5' 85.4 119.6
O3' C3' C4' H4' 328.5 358.6
H3' C3' C2' H2' 34.0 338.7
C2' C3' H3' C4' 116.3 114.8
C2' C3' H3' O3' 238.2 237.5
C4' C3' H3' O3' 121.8 122.7
H3' C3' C4' O4' 91.2 116.7
H3' C3' C4' C5' 328.8 357.1
H3' C3' C4' H4' 211.8 236.1
H3' C3' O3' HO3' 57.9 57.4
C4' O4' C1' H1' 126.6 78.5
O4' C4' C3' O3' 207.9 239.2
O4' C4' C3' H3' 91.2 116.7
C3' C4' O4' C5' 237.8 240.5
C3' C4' O4' H4' 120.9 119.4
C5' C4' O4' H4' 243.0 239.0
O4' C4' C5' O5' 294.8 62.1
O4' C4' C5' H5' 60.1 182.1
O4' C4' C5' H5'' 169.6 302.1
C5' C4' C3' O3' 85.4 119.6
C5' C4' C3' H3' 328.8 357.1
C3' C4' C5' O4' 118.8 117.9
C3' C4' C5' H4' 239.3 238.9
O4' C4' C5' H4' 120.5 121.0
O5' C5' C4' H5' 234.7 240.1
O5' C5' C4' H5'' 125.2 120.0
C4' C5' O5' P 194.0 180.0
H5' C5' C4' H5'' 250.5 240.0
H4' C4' C3' O3' 328.5 358.6
H4' C4' C3' H3' 211.8 236.1
C3' C4' H4' O4' 242.3 242.2
C3' C4' H4' C5' 121.0 121.1
O4' C4' H4' C5' 238.7 238.9
H4' C4' C5' O5' 174.3 301.1
H4' C4' C5' H5' 299.6 61.0
H4' C4' C5' H5'' 49.1 181.1
HO3' O3' C3' H3' 57.9 57.4
O5' C5' C4' H4' 174.3 301.1
C4' C5' O5' H5' 125.3 120.0
C4' C5' O5' H5'' 234.7 240.0
H5' C5' O5' H5'' 109.5 120.0
C5' O5' P OP1 41.0 60.0
C5' O5' P OP2 172.2 179.9
C5' O5' P OP3 286.8 300.0
H5' C5' C4' H4' 299.6 61.0
C4' C5' H5' O5' 233.9 240.0
C4' C5' H5' H5'' 117.0 120.0
O5' C5' H5' H5'' 243.1 240.0
H5' C5' O5' P 68.8 60.0
H5'' C5' C4' H4' 49.1 181.1
C4' C5' H5'' O5' 126.1 120.0
C4' C5' H5'' H5' 243.1 240.0
O5' C5' H5'' H5' 117.0 119.9
H5'' C5' O5' P 319.3 300.0
P O5' C5' H5' 68.8 60.0
P O5' C5' H5'' 319.3 300.0
OP1 P O5' OP2 228.8 240.0
OP1 P O5' OP3 114.2 120.0
OP2 P O5' OP3 245.4 240.0
O5' P OP2 HOP2 180.0 180.0
O5' P OP3 HOP3 180.0 300.0
O5' P OP1 OP2 124.5 120.0
O5' P OP1 OP3 249.1 240.0
OP2 P OP1 OP3 124.6 119.9
OP1 P OP2 HOP2 304.6 300.0
OP1 P OP3 HOP3 65.6 180.0
O5' P OP2 OP1 235.4 240.0
O5' P OP2 OP3 111.0 120.0
OP1 P OP2 OP3 235.6 240.0
OP2 P OP3 HOP3 294.4 60.0
O5' P OP3 OP1 114.4 120.0
O5' P OP3 OP2 245.6 239.9
OP1 P OP3 OP2 131.2 119.9
OP3 P OP2 HOP2 69.0 59.9
HOP2 OP2 P OP3 69.0 59.9