PDB Chemical Component OMT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OMT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.452 |
1.470 |
| N |
H |
1.021 |
1.010 |
| N |
H2 |
1.020 |
1.008 |
| CA |
CB |
1.506 |
1.529 |
| CA |
C |
1.503 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.496 |
1.529 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.114 |
1.090 |
| CG |
SD |
1.699 |
1.813 |
| CG |
HG2 |
1.114 |
1.089 |
| CG |
HG3 |
1.114 |
1.091 |
| SD |
CE |
1.590 |
1.813 |
| SD |
OD1 |
1.439 |
1.421 |
| SD |
OD2 |
1.421 |
1.421 |
| CE |
HE1 |
1.115 |
1.090 |
| CE |
HE2 |
1.116 |
1.090 |
| CE |
HE3 |
1.115 |
1.089 |
| C |
O |
1.233 |
1.209 |
| C |
OXT |
1.337 |
1.342 |
| OXT |
HXT |
0.949 |
0.968 |
Bond Angles for OMT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.4 |
106.7 |
| CA |
N |
H2 |
111.5 |
106.7 |
| N |
CA |
CB |
111.4 |
109.5 |
| N |
CA |
C |
100.3 |
109.4 |
| N |
CA |
HA |
113.4 |
109.4 |
| H |
N |
H2 |
111.4 |
106.7 |
| CB |
CA |
C |
107.3 |
109.6 |
| CB |
CA |
HA |
107.1 |
109.5 |
| CA |
CB |
CG |
116.9 |
109.5 |
| CA |
CB |
HB2 |
109.5 |
109.5 |
| CA |
CB |
HB3 |
109.5 |
109.4 |
| C |
CA |
HA |
117.1 |
109.5 |
| CA |
C |
O |
118.3 |
120.0 |
| CA |
C |
OXT |
116.8 |
120.1 |
| CG |
CB |
HB2 |
109.6 |
109.5 |
| CG |
CB |
HB3 |
109.6 |
109.4 |
| CB |
CG |
SD |
109.6 |
109.5 |
| CB |
CG |
HG2 |
112.1 |
109.5 |
| CB |
CG |
HG3 |
112.1 |
109.4 |
| HB2 |
CB |
HB3 |
100.6 |
109.5 |
| SD |
CG |
HG2 |
112.1 |
109.5 |
| SD |
CG |
HG3 |
112.1 |
109.4 |
| CG |
SD |
CE |
110.3 |
99.5 |
| CG |
SD |
OD1 |
105.6 |
109.0 |
| CG |
SD |
OD2 |
113.4 |
109.0 |
| HG2 |
CG |
HG3 |
98.3 |
109.4 |
| CE |
SD |
OD1 |
113.0 |
109.0 |
| CE |
SD |
OD2 |
107.2 |
109.0 |
| SD |
CE |
HE1 |
110.3 |
109.5 |
| SD |
CE |
HE2 |
112.0 |
109.4 |
| SD |
CE |
HE3 |
111.9 |
109.4 |
| OD1 |
SD |
OD2 |
107.5 |
119.5 |
| HE1 |
CE |
HE2 |
111.8 |
109.5 |
| HE1 |
CE |
HE3 |
111.9 |
109.5 |
| HE2 |
CE |
HE3 |
98.5 |
109.5 |
| O |
C |
OXT |
124.8 |
119.9 |
| C |
OXT |
HXT |
116.8 |
120.0 |
Torsion Angles for OMT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
246.6 |
239.9 |
| CB |
CA |
N |
HA |
120.9 |
120.0 |
| N |
CA |
CB |
CG |
201.7 |
300.0 |
| N |
CA |
CB |
HB2 |
327.0 |
180.0 |
| N |
CA |
CB |
HB3 |
76.4 |
60.0 |
| C |
CA |
N |
HA |
234.3 |
240.1 |
| N |
CA |
C |
O |
322.1 |
329.9 |
| N |
CA |
C |
OXT |
144.3 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
293.3 |
173.8 |
| H |
N |
CA |
HA |
59.0 |
293.8 |
| CA |
N |
H2 |
H |
125.3 |
113.7 |
| H2 |
N |
CA |
CB |
54.7 |
300.0 |
| H2 |
N |
CA |
C |
168.1 |
60.1 |
| H2 |
N |
CA |
HA |
293.8 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
CB |
C |
108.9 |
120.0 |
| N |
CA |
CB |
HA |
235.5 |
240.1 |
| C |
CA |
CB |
HA |
126.6 |
120.0 |
| CB |
CA |
C |
O |
78.5 |
89.9 |
| CB |
CA |
C |
OXT |
260.8 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.1 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
SD |
84.5 |
180.0 |
| CA |
CB |
CG |
HG2 |
209.8 |
59.9 |
| CA |
CB |
CG |
HG3 |
319.3 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
120.0 |
| C |
CA |
N |
H |
293.3 |
173.8 |
| C |
CA |
N |
H2 |
168.1 |
60.1 |
| N |
CA |
C |
CB |
243.5 |
239.9 |
| N |
CA |
C |
HA |
123.1 |
119.9 |
| CB |
CA |
C |
HA |
239.6 |
240.0 |
| C |
CA |
CB |
CG |
92.8 |
180.0 |
| C |
CA |
CB |
HB2 |
218.1 |
60.0 |
| C |
CA |
CB |
HB3 |
327.5 |
300.0 |
| O |
C |
CA |
OXT |
177.7 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| HA |
CA |
N |
H |
59.0 |
293.8 |
| HA |
CA |
N |
H2 |
293.8 |
180.0 |
| N |
CA |
HA |
CB |
123.3 |
120.0 |
| N |
CA |
HA |
C |
243.9 |
240.1 |
| CB |
CA |
HA |
C |
120.5 |
120.1 |
| HA |
CA |
CB |
CG |
326.2 |
60.0 |
| HA |
CA |
CB |
HB2 |
91.5 |
299.9 |
| HA |
CA |
CB |
HB3 |
200.9 |
180.0 |
| HA |
CA |
C |
O |
199.0 |
210.0 |
| HA |
CA |
C |
OXT |
21.2 |
30.1 |
| CG |
CB |
CA |
C |
92.8 |
180.0 |
| CG |
CB |
CA |
HA |
326.2 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
239.9 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.1 |
| SD |
CG |
CB |
HG2 |
234.8 |
120.0 |
| SD |
CG |
CB |
HG3 |
125.2 |
240.0 |
| CB |
CG |
SD |
CE |
39.5 |
180.0 |
| CB |
CG |
SD |
OD1 |
161.9 |
66.0 |
| CB |
CG |
SD |
OD2 |
279.3 |
293.9 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
120.0 |
| HB2 |
CB |
CA |
C |
218.1 |
60.0 |
| HB2 |
CB |
CA |
HA |
91.5 |
299.9 |
| CA |
CB |
HB2 |
CG |
230.6 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
115.3 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
244.7 |
119.9 |
| HB2 |
CB |
CG |
SD |
319.3 |
300.1 |
| HB2 |
CB |
CG |
HG2 |
84.5 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
194.1 |
60.1 |
| HB3 |
CB |
CA |
C |
327.5 |
300.0 |
| HB3 |
CB |
CA |
HA |
200.9 |
180.0 |
| CA |
CB |
HB3 |
CG |
129.4 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
244.8 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
115.3 |
240.0 |
| HB3 |
CB |
CG |
SD |
209.8 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
335.0 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
84.6 |
180.0 |
| SD |
CG |
CB |
HB2 |
319.3 |
300.1 |
| SD |
CG |
CB |
HB3 |
209.8 |
60.0 |
| CB |
CG |
SD |
HG2 |
125.2 |
239.9 |
| CB |
CG |
SD |
HG3 |
234.8 |
120.0 |
| HG2 |
CG |
SD |
HG3 |
109.6 |
240.1 |
| CE |
SD |
CG |
OD1 |
237.6 |
114.0 |
| CE |
SD |
CG |
OD2 |
120.2 |
246.0 |
| CG |
SD |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SD |
CE |
HE2 |
305.3 |
300.0 |
| CG |
SD |
CE |
HE3 |
54.7 |
60.0 |
| OD1 |
SD |
CG |
OD2 |
242.6 |
132.0 |
| HG2 |
CG |
CB |
HB2 |
84.5 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
335.0 |
300.0 |
| CB |
CG |
HG2 |
SD |
236.1 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
118.1 |
240.0 |
| SD |
CG |
HG2 |
HG3 |
241.9 |
119.9 |
| HG2 |
CG |
SD |
CE |
274.3 |
300.0 |
| HG2 |
CG |
SD |
OD1 |
36.7 |
186.1 |
| HG2 |
CG |
SD |
OD2 |
154.1 |
54.0 |
| HG3 |
CG |
CB |
HB2 |
194.1 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
84.6 |
180.0 |
| CB |
CG |
HG3 |
SD |
123.8 |
240.0 |
| CB |
CG |
HG3 |
HG2 |
241.9 |
120.0 |
| SD |
CG |
HG3 |
HG2 |
118.1 |
240.0 |
| HG3 |
CG |
SD |
CE |
164.7 |
60.0 |
| HG3 |
CG |
SD |
OD1 |
287.1 |
306.0 |
| HG3 |
CG |
SD |
OD2 |
44.5 |
174.0 |
| CE |
SD |
CG |
HG2 |
274.3 |
300.0 |
| CE |
SD |
CG |
HG3 |
164.7 |
60.0 |
| CG |
SD |
CE |
OD1 |
117.9 |
246.0 |
| CG |
SD |
CE |
OD2 |
236.1 |
114.0 |
| OD1 |
SD |
CE |
OD2 |
118.2 |
227.9 |
| HE1 |
CE |
SD |
HE2 |
234.8 |
240.0 |
| HE1 |
CE |
SD |
HE3 |
125.3 |
120.0 |
| HE2 |
CE |
SD |
HE3 |
250.5 |
240.0 |
| OD1 |
SD |
CG |
HG2 |
36.7 |
186.1 |
| OD1 |
SD |
CG |
HG3 |
287.1 |
306.0 |
| CG |
SD |
OD1 |
CE |
239.4 |
107.6 |
| CG |
SD |
OD1 |
OD2 |
121.3 |
233.8 |
| CE |
SD |
OD1 |
OD2 |
241.9 |
126.2 |
| OD1 |
SD |
CE |
HE1 |
62.2 |
293.9 |
| OD1 |
SD |
CE |
HE2 |
187.4 |
54.0 |
| OD1 |
SD |
CE |
HE3 |
296.8 |
174.0 |
| OD2 |
SD |
CG |
HG2 |
154.1 |
54.0 |
| OD2 |
SD |
CG |
HG3 |
44.5 |
174.0 |
| CG |
SD |
OD2 |
CE |
121.9 |
252.4 |
| CG |
SD |
OD2 |
OD1 |
243.7 |
126.2 |
| CE |
SD |
OD2 |
OD1 |
121.8 |
233.8 |
| OD2 |
SD |
CE |
HE1 |
303.9 |
66.0 |
| OD2 |
SD |
CE |
HE2 |
69.1 |
186.0 |
| OD2 |
SD |
CE |
HE3 |
178.6 |
306.1 |
| HE1 |
CE |
SD |
OD1 |
62.2 |
293.9 |
| HE1 |
CE |
SD |
OD2 |
303.9 |
66.0 |
| SD |
CE |
HE1 |
HE2 |
125.3 |
120.0 |
| SD |
CE |
HE1 |
HE3 |
234.7 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.4 |
120.1 |
| HE2 |
CE |
SD |
OD1 |
187.4 |
54.0 |
| HE2 |
CE |
SD |
OD2 |
69.1 |
186.0 |
| SD |
CE |
HE2 |
HE1 |
235.7 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
117.8 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
242.2 |
240.0 |
| HE3 |
CE |
SD |
OD1 |
296.8 |
174.0 |
| HE3 |
CE |
SD |
OD2 |
178.6 |
306.1 |
| SD |
CE |
HE3 |
HE1 |
124.4 |
120.0 |
| SD |
CE |
HE3 |
HE2 |
242.1 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
117.8 |
120.1 |
| O |
C |
CA |
HA |
199.0 |
210.0 |
| CA |
C |
O |
OXT |
182.5 |
180.1 |
| O |
C |
OXT |
HXT |
2.5 |
360.0 |
| OXT |
C |
CA |
HA |
21.2 |
30.1 |
| CA |
C |
OXT |
O |
177.6 |
179.9 |