PDB Chemical Component OMG

Ideal Model

Chemical Description

Name O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
Formula C11 H16 N5 O8 P
Formal charge 0
Molecular weight 377.247 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-methylguanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-4-methoxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N
SMILES (CACTVS) CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N
Stereo SMILES (OpenEye) CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H16N5O8P/c1-22-7-6(17)4(2-23-25(19,20)21)24-10(7)16-3-13-5-8(16)14-11(12)15-9(5)18/h3-4,6-7,10,17H,2H2,1H3,(H2,19,20,21)(H3,12,14,15,18)/t4-,6-,7-,10-/m1/s1
InChIKey descriptor YPMKZCOIEXUDSS-KQYNXXCUSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1EVV
Processing site EBI