PDB Chemical Component OLD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OLD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
N |
1.440 |
1.468 |
| N |
HN |
1.000 |
1.009 |
| N |
HNA |
1.000 |
1.009 |
| CB |
CA |
1.504 |
1.530 |
| CA |
C |
1.513 |
1.508 |
| CA |
HA |
1.100 |
1.090 |
| CG |
CB |
1.475 |
1.507 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CD2 |
CG |
1.357 |
1.346 |
| CG |
ND1 |
1.378 |
1.369 |
| NE2 |
CD2 |
1.368 |
1.342 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
ND1 |
1.314 |
1.350 |
| ND1 |
CH |
1.506 |
1.465 |
| NE2 |
CE1 |
1.328 |
1.305 |
| CE1 |
HE1 |
1.080 |
1.080 |
| C9 |
CH |
1.524 |
1.506 |
| CH |
HH |
1.101 |
1.091 |
| CH |
HHA |
1.100 |
1.090 |
| CD1 |
CG1 |
1.406 |
1.399 |
| CG1 |
CD3 |
1.422 |
1.399 |
| CG1 |
C9 |
1.381 |
1.471 |
| CE3 |
CD1 |
1.394 |
1.379 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CE3 |
CZ |
1.434 |
1.386 |
| CE3 |
HE3 |
1.080 |
1.080 |
| CE2 |
CD3 |
1.372 |
1.378 |
| CD3 |
HD3 |
1.080 |
1.080 |
| CZ |
CE2 |
1.394 |
1.385 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
BR |
1.885 |
1.891 |
| O2 |
C9 |
1.229 |
1.213 |
| O |
C |
1.229 |
1.209 |
| C |
OXT |
1.343 |
1.342 |
| OXT |
HOXT |
0.950 |
0.967 |
Bond Angles for OLD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN |
109.5 |
111.0 |
| CA |
N |
HNA |
109.4 |
111.0 |
| HN |
N |
HNA |
109.5 |
111.0 |
| CB |
CA |
C |
111.3 |
109.5 |
| CB |
CA |
HA |
111.0 |
109.5 |
| C |
CA |
HA |
106.7 |
109.4 |
| CA |
C |
OXT |
117.9 |
120.0 |
| CG |
CB |
HB |
107.3 |
109.4 |
| CG |
CB |
HBA |
105.8 |
109.4 |
| HB |
CB |
HBA |
114.7 |
109.4 |
| CD2 |
CG |
ND1 |
106.0 |
106.8 |
| CG |
ND1 |
CH |
140.4 |
126.4 |
| NE2 |
CD2 |
HD2 |
126.4 |
125.9 |
| CE1 |
ND1 |
CH |
110.1 |
126.4 |
| ND1 |
CH |
HH |
109.7 |
109.4 |
| ND1 |
CH |
HHA |
109.9 |
109.5 |
| NE2 |
CE1 |
HE1 |
125.8 |
125.6 |
| C9 |
CH |
HH |
109.7 |
109.4 |
| C9 |
CH |
HHA |
109.8 |
109.5 |
| HH |
CH |
HHA |
109.0 |
109.5 |
| CD1 |
CG1 |
CD3 |
119.6 |
119.7 |
| CD1 |
CG1 |
C9 |
122.4 |
120.1 |
| CD3 |
CG1 |
C9 |
117.9 |
120.2 |
| CG1 |
CD3 |
HD3 |
119.0 |
120.1 |
| CE3 |
CD1 |
HD1 |
120.7 |
120.0 |
| CZ |
CE3 |
HE3 |
119.7 |
119.9 |
| CE3 |
CZ |
CE2 |
120.2 |
120.3 |
| CE3 |
CZ |
BR |
121.2 |
119.8 |
| CE2 |
CD3 |
HD3 |
119.0 |
120.1 |
| CZ |
CE2 |
HE2 |
120.6 |
119.9 |
| O |
C |
OXT |
122.7 |
120.0 |
| C |
OXT |
HOXT |
109.5 |
117.0 |
Torsion Angles for OLD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN |
N |
CA |
HNA |
240.0 |
236.1 |
| CA |
N |
HN |
HNA |
120.0 |
124.0 |
| CA |
N |
HNA |
HN |
240.0 |
236.0 |
| CB |
CA |
N |
HN |
282.4 |
176.1 |
| CB |
CA |
N |
HNA |
42.4 |
300.0 |
| C |
CA |
CB |
HA |
118.6 |
120.0 |
| CB |
CA |
C |
OXT |
73.4 |
280.0 |
| C |
CA |
N |
HN |
42.7 |
296.1 |
| C |
CA |
N |
HNA |
162.7 |
60.0 |
| CB |
CA |
C |
HA |
238.8 |
240.0 |
| O |
C |
CA |
OXT |
185.3 |
180.0 |
| CA |
C |
OXT |
HOXT |
185.5 |
180.0 |
| HA |
CA |
N |
HN |
161.3 |
56.1 |
| HA |
CA |
N |
HNA |
281.3 |
180.0 |
| CB |
CA |
HA |
C |
121.4 |
120.0 |
| HA |
CA |
C |
OXT |
194.6 |
40.0 |
| CG |
CB |
CA |
C |
61.0 |
175.0 |
| CG |
CB |
CA |
HA |
302.4 |
55.0 |
| HB |
CB |
CG |
HBA |
123.0 |
119.9 |
| HB |
CB |
CA |
C |
181.0 |
295.0 |
| HB |
CB |
CA |
HA |
62.4 |
175.0 |
| CG |
CB |
HB |
HBA |
242.7 |
240.1 |
| HBA |
CB |
CA |
C |
304.0 |
55.0 |
| HBA |
CB |
CA |
HA |
185.4 |
295.0 |
| CG |
CB |
HBA |
HB |
118.2 |
119.9 |
| CD2 |
CG |
CB |
HB |
304.9 |
325.2 |
| CD2 |
CG |
CB |
HBA |
181.9 |
205.3 |
| CD2 |
CG |
ND1 |
CH |
180.1 |
179.7 |
| ND1 |
CG |
CB |
HB |
124.3 |
145.0 |
| ND1 |
CG |
CB |
HBA |
1.3 |
25.1 |
| CE1 |
ND1 |
CG |
CH |
180.7 |
180.0 |
| CG |
ND1 |
CH |
HH |
27.1 |
205.0 |
| CG |
ND1 |
CH |
HHA |
146.8 |
325.0 |
| HD2 |
CD2 |
CG |
ND1 |
179.0 |
180.2 |
| CG |
ND1 |
CE1 |
CH |
179.5 |
180.0 |
| CE1 |
ND1 |
CH |
HH |
206.4 |
25.0 |
| CE1 |
ND1 |
CH |
HHA |
326.1 |
145.0 |
| C9 |
CH |
ND1 |
HH |
240.0 |
240.1 |
| C9 |
CH |
ND1 |
HHA |
120.3 |
120.1 |
| HH |
CH |
ND1 |
HHA |
240.2 |
240.0 |
| CE1 |
NE2 |
CD2 |
HD2 |
180.9 |
179.9 |
| NE2 |
CE1 |
ND1 |
CH |
180.2 |
180.2 |
| HE1 |
CE1 |
ND1 |
CH |
0.2 |
360.0 |
| ND1 |
CH |
C9 |
HH |
120.0 |
119.9 |
| ND1 |
CH |
C9 |
HHA |
239.7 |
240.0 |
| HH |
CH |
C9 |
HHA |
119.8 |
120.0 |
| ND1 |
CH |
HH |
HHA |
120.3 |
120.0 |
| C9 |
CH |
HH |
HHA |
239.7 |
240.0 |
| ND1 |
CH |
HHA |
HH |
239.8 |
240.0 |
| C9 |
CH |
HHA |
HH |
120.2 |
120.0 |
| CD3 |
CG1 |
CD1 |
C9 |
180.4 |
180.2 |
| CD1 |
CG1 |
CD3 |
HD3 |
181.1 |
179.7 |
| CD1 |
CG1 |
CD3 |
C9 |
179.6 |
179.8 |
| CE2 |
CD3 |
CG1 |
HD3 |
180.0 |
180.0 |
| CG1 |
C9 |
CH |
HH |
112.3 |
60.1 |
| CG1 |
C9 |
CH |
HHA |
352.6 |
300.1 |
| CD1 |
CG1 |
C9 |
CD3 |
180.4 |
180.2 |
| C9 |
CG1 |
CD3 |
HD3 |
1.5 |
359.9 |
| CE3 |
CD1 |
CG1 |
CD3 |
358.9 |
360.0 |
| CE3 |
CD1 |
CG1 |
C9 |
178.5 |
179.8 |
| HD1 |
CD1 |
CG1 |
CD3 |
178.9 |
180.0 |
| HD1 |
CD1 |
CG1 |
C9 |
358.5 |
359.7 |
| CZ |
CE3 |
CD1 |
HD1 |
180.3 |
180.0 |
| CE3 |
CZ |
CE2 |
HE2 |
179.4 |
179.9 |
| HE3 |
CE3 |
CD1 |
HD1 |
0.3 |
360.0 |
| HE3 |
CE3 |
CZ |
CE2 |
180.6 |
180.3 |
| HE3 |
CE3 |
CZ |
BR |
2.2 |
0.0 |
| CE2 |
CD3 |
CG1 |
C9 |
181.5 |
180.0 |
| CG1 |
CD3 |
CE2 |
HD3 |
180.0 |
180.0 |
| CE3 |
CZ |
CE2 |
CD3 |
359.4 |
359.5 |
| HD3 |
CD3 |
CG1 |
C9 |
1.5 |
359.9 |
| CE2 |
CZ |
CE3 |
HE3 |
180.6 |
180.3 |
| CE3 |
CZ |
CE2 |
BR |
181.6 |
179.7 |
| CZ |
CE2 |
CD3 |
HD3 |
179.8 |
180.6 |
| HE2 |
CE2 |
CD3 |
HD3 |
359.8 |
0.1 |
| BR |
CZ |
CE3 |
HE3 |
2.2 |
0.0 |
| CE3 |
CZ |
BR |
CE2 |
178.4 |
180.3 |
| BR |
CZ |
CE2 |
HE2 |
357.8 |
0.2 |
| O2 |
C9 |
CH |
HH |
293.1 |
240.0 |
| O2 |
C9 |
CH |
HHA |
173.3 |
120.0 |
| O |
C |
CA |
HA |
19.9 |
220.0 |
| CA |
C |
O |
OXT |
174.4 |
180.0 |
| O |
C |
OXT |
HOXT |
0.0 |
0.0 |
| OXT |
C |
CA |
HA |
194.6 |
40.0 |