PDB Chemical Component OL2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OL2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 C02 1.528 1.530
C02 O03 1.395 1.429
O03 C04 1.398 1.356
C04 C05 1.401 1.384
C04 C28 1.404 1.403
C05 C06 1.399 1.393
C06 C07 1.383 1.482
C06 C26 1.400 1.398
C07 N08 1.335 1.326
C07 C24 1.398 1.404
N08 C09 1.338 1.330
C09 C10 1.385 1.483
C09 C22 1.398 1.395
C10 C11 1.399 1.393
C10 C21 1.401 1.394
C11 C12 1.401 1.384
C12 O13 1.403 1.360
C12 C15 1.402 1.391
O13 C14 1.401 1.429
C15 O16 1.401 1.361
C15 C18 1.410 1.391
O16 C17 1.409 1.429
C18 O19 1.400 1.360
C18 C21 1.402 1.383
O19 C20 1.396 1.430
C22 N23 1.337 1.320
N23 C24 1.342 1.328
C24 N25 1.449 1.387
C26 C27 1.397 1.365
C27 C28 1.397 1.399
C28 C29 1.523 1.474
C29 O30 1.186 1.215
C29 O31 1.400 1.348
C01 H011 1.100 1.090
C01 H012 1.100 1.090
C01 H013 1.101 1.090
C02 H021 1.100 1.090
C02 H022 1.100 1.090
C05 H05 1.080 1.080
C26 H26 1.080 1.079
C22 H22 1.079 1.080
C11 H11 1.080 1.080
C21 H21 1.080 1.080
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C14 H143 1.100 1.090
C17 H171 1.099 1.090
C17 H172 1.100 1.090
C17 H173 1.100 1.089
C20 H201 1.100 1.090
C20 H202 1.100 1.090
C20 H203 1.100 1.090
N25 H251 1.000 0.970
N25 H252 1.000 0.970
C27 H27 1.080 1.080
O31 H31 0.950 0.967

Bond Angles for OL2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 C02 O03 116.5 109.5
C02 C01 H011 109.5 109.4
C02 C01 H012 109.5 109.5
C02 C01 H013 109.4 109.4
C01 C02 H021 107.2 109.5
C01 C02 H022 105.6 109.5
C02 O03 C04 120.6 117.0
O03 C02 H021 107.2 109.5
O03 C02 H022 105.6 109.5
O03 C04 C05 120.1 120.2
O03 C04 C28 119.9 120.1
C05 C04 C28 120.0 119.7
C04 C05 C06 119.3 119.9
C04 C05 H05 120.3 120.1
C04 C28 C27 120.5 119.9
C04 C28 C29 120.8 120.1
C05 C06 C07 121.1 119.9
C05 C06 C26 120.5 120.1
C06 C05 H05 120.3 120.0
C07 C06 C26 118.4 119.9
C06 C07 N08 119.4 120.1
C06 C07 C24 120.5 120.1
C06 C26 C27 120.2 120.3
C06 C26 H26 119.9 119.9
N08 C07 C24 119.5 119.9
C07 N08 C09 120.6 119.9
C07 C24 N23 119.7 119.9
C07 C24 N25 120.1 120.1
N08 C09 C10 118.2 119.9
N08 C09 C22 120.1 120.1
C10 C09 C22 121.7 120.0
C09 C10 C11 118.6 120.0
C09 C10 C21 121.1 120.0
C09 C22 N23 119.3 120.2
C09 C22 H22 120.4 119.9
C11 C10 C21 120.3 119.9
C10 C11 C12 119.9 120.0
C10 C11 H11 120.0 120.0
C10 C21 C18 120.1 119.9
C10 C21 H21 120.0 120.0
C11 C12 O13 120.1 120.0
C11 C12 C15 120.0 120.0
C12 C11 H11 120.0 120.0
O13 C12 C15 119.9 120.0
C12 O13 C14 119.7 117.0
C12 C15 O16 117.9 119.9
C12 C15 C18 120.1 120.1
O13 C14 H141 109.5 109.5
O13 C14 H142 109.4 109.4
O13 C14 H143 109.5 109.5
O16 C15 C18 122.0 120.0
C15 O16 C17 119.0 117.0
C15 C18 O19 121.5 119.9
C15 C18 C21 119.6 120.1
O16 C17 H171 109.5 109.5
O16 C17 H172 109.4 109.4
O16 C17 H173 109.4 109.5
O19 C18 C21 118.9 120.0
C18 O19 C20 119.0 117.0
C18 C21 H21 120.0 120.1
O19 C20 H201 109.5 109.5
O19 C20 H202 109.5 109.5
O19 C20 H203 109.4 109.5
C22 N23 C24 120.7 120.1
N23 C22 H22 120.4 119.9
N23 C24 N25 120.2 120.0
C24 N25 H251 109.5 119.9
C24 N25 H252 109.4 120.0
C26 C27 C28 119.4 120.1
C27 C26 H26 119.9 119.8
C26 C27 H27 120.3 119.9
C27 C28 C29 118.6 120.0
C28 C27 H27 120.3 119.9
C28 C29 O30 120.1 120.0
C28 C29 O31 118.3 120.0
O30 C29 O31 120.4 120.0
C29 O31 H31 109.5 117.0
H011 C01 H012 109.5 109.5
H011 C01 H013 109.5 109.5
H012 C01 H013 109.5 109.5
H021 C02 H022 115.1 109.5
H141 C14 H142 109.5 109.5
H141 C14 H143 109.5 109.4
H142 C14 H143 109.5 109.5
H171 C17 H172 109.5 109.5
H171 C17 H173 109.4 109.5
H172 C17 H173 109.5 109.5
H201 C20 H202 109.5 109.4
H201 C20 H203 109.4 109.5
H202 C20 H203 109.5 109.5
H251 N25 H252 109.4 120.1

Torsion Angles for OL2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C01 C02 O03 C04 198.1 180.0
O03 C02 C01 H021 240.0 240.0
O03 C02 C01 H022 116.8 120.0
H011 C01 C02 H012 240.0 240.0
H011 C01 C02 H013 120.0 120.0
H012 C01 C02 H013 240.0 240.1
H021 C02 C01 H022 236.8 240.0
O03 C02 C01 H011 298.0 60.0
O03 C02 C01 H012 58.0 180.0
O03 C02 C01 H013 178.0 300.0
C01 C02 O03 H021 120.0 120.0
C01 C02 O03 H022 243.2 240.0
C02 O03 C04 C05 52.7 360.0
C02 O03 C04 C28 230.7 179.7
H021 C02 O03 H022 123.2 120.0
C04 O03 C02 H021 78.1 60.0
C04 O03 C02 H022 314.9 300.1
C05 C04 O03 C28 181.9 180.3
O03 C04 C05 C06 178.3 180.0
O03 C04 C05 H05 358.3 360.0
O03 C04 C28 C27 181.4 179.7
O03 C04 C28 C29 1.7 360.0
O03 C04 C05 C28 178.1 179.7
C05 C04 C28 C27 359.5 359.4
C05 C04 C28 C29 179.8 179.7
C04 C05 C06 C07 178.5 180.0
C04 C05 C06 C26 0.6 0.0
C06 C05 C04 H05 180.0 180.0
O03 C04 C28 C05 181.9 180.3
C28 C04 C05 C06 0.2 0.3
C28 C04 C05 H05 180.2 180.2
C26 C27 C28 C04 0.1 0.6
C27 C28 C04 C29 179.7 179.7
C04 C28 C27 H27 180.0 180.3
C04 C28 C29 O30 313.7 0.0
C04 C28 C29 O31 146.0 180.0
C06 C05 C04 C28 0.2 0.3
C04 C05 C06 H05 180.0 180.0
C07 C06 C05 C26 177.9 180.0
C05 C06 C07 N08 304.6 44.2
C05 C06 C07 C24 133.5 223.9
C05 C06 C26 C27 358.9 0.0
C05 C06 C26 H26 178.9 180.0
C05 C06 C07 C26 182.1 180.0
C07 C06 C05 H05 358.5 0.0
C07 C06 C26 C27 180.9 180.0
C07 C06 C26 H26 0.9 360.0
N08 C07 C06 C24 171.1 180.3
C06 C07 N08 C09 183.1 180.0
C06 C07 C24 N23 176.3 179.7
C06 C07 C24 N25 354.4 0.0
C05 C06 C26 C07 178.0 180.0
C26 C06 C05 H05 180.6 180.0
C26 C06 C07 N08 122.6 224.2
C26 C06 C07 C24 311.4 43.9
C06 C26 C27 C28 0.8 359.7
C27 C26 C06 H26 180.0 180.1
C06 C26 C27 H27 180.8 180.0
N08 C07 C06 C26 122.6 224.2
C06 C07 N08 C24 188.8 179.7
N08 C07 C24 N23 5.2 359.4
N08 C07 C24 N25 183.2 179.7
C07 N08 C09 C10 181.6 180.0
C07 N08 C09 C22 3.3 360.0
C24 C07 C06 C26 311.4 43.9
C06 C07 C24 N08 171.1 180.3
C24 C07 N08 C09 354.4 0.3
C22 N23 C24 C07 357.6 0.6
N23 C24 C07 N25 182.0 179.7
C07 C24 N25 H251 347.1 8.6
C07 C24 N25 H252 107.1 188.6
C09 N08 C07 C24 354.4 0.3
C10 C09 N08 C22 178.3 180.0
N08 C09 C10 C11 356.0 185.0
N08 C09 C10 C21 177.2 4.8
N08 C09 C22 N23 359.6 0.1
N08 C09 C22 H22 179.6 180.0
N08 C09 C10 C22 181.7 180.0
C10 C09 C22 N23 181.3 180.1
C10 C09 C22 H22 1.3 360.0
C11 C10 C09 C21 178.8 180.2
C09 C10 C11 C12 180.9 180.0
C09 C10 C11 H11 0.8 0.0
C09 C10 C21 C18 179.0 179.7
C09 C10 C21 H21 358.9 360.0
N08 C09 C22 C10 178.3 180.0
C22 C09 C10 C11 174.3 5.0
C22 C09 C10 C21 355.5 184.8
C09 C22 N23 C24 0.0 359.6
N23 C22 C09 H22 180.0 180.1
C11 C10 C09 C22 174.3 5.0
C09 C10 C11 C21 181.2 179.8
C11 C10 C21 C18 0.2 359.5
C11 C10 C21 H21 180.2 179.8
C10 C11 C12 O13 181.0 180.0
C10 C11 C12 C15 0.1 0.1
C12 C11 C10 H11 180.0 180.0
C21 C10 C09 C22 355.5 184.8
C09 C10 C21 C11 178.8 180.2
C21 C10 C11 C12 359.7 0.2
C21 C10 C11 H11 179.6 180.2
C15 C18 C21 C10 0.2 0.5
O19 C18 C21 C10 179.1 180.3
C18 C21 C10 H21 180.0 179.7
C12 C11 C10 C21 359.7 0.2
C10 C11 C12 H11 180.0 180.0
O13 C12 C11 C15 180.9 179.9
C11 C12 O13 C14 6.7 0.1
C11 C12 C15 O16 178.4 180.0
C11 C12 C15 C18 0.3 359.9
C11 C12 O13 C15 179.1 180.1
O13 C12 C11 H11 1.0 360.0
O13 C12 C15 O16 357.5 0.1
O13 C12 C15 C18 179.4 180.0
C12 O13 C14 H141 276.4 59.9
C12 O13 C14 H142 36.4 179.9
C12 O13 C14 H143 156.4 299.9
C11 C12 C15 O13 180.9 179.9
C15 C12 C11 H11 180.1 180.0
C15 C12 O13 C14 187.6 180.0
O16 C15 C12 C18 178.1 180.1
C12 C15 O16 C17 290.1 90.0
C12 C15 C18 O19 180.7 180.0
C12 C15 C18 C21 359.6 359.8
C14 O13 C12 C15 187.6 180.0
H141 C14 O13 H142 240.0 240.0
H141 C14 O13 H143 120.0 120.0
H142 C14 O13 H143 240.0 240.0
C12 C15 O16 C18 181.9 179.9
O16 C15 C18 O19 2.7 360.0
O16 C15 C18 C21 181.5 179.7
C15 O16 C17 H171 272.3 300.0
C15 O16 C17 H172 32.4 60.0
C15 O16 C17 H173 152.4 180.0
C10 C21 C18 C15 0.2 0.5
C12 C15 C18 O16 178.0 180.1
C18 C15 O16 C17 108.2 270.1
O19 C18 C15 C21 181.2 180.3
C15 C18 O19 C20 296.9 180.0
C15 C18 C21 H21 180.2 180.3
C17 O16 C15 C18 108.2 270.1
H171 C17 O16 H172 240.0 240.0
H171 C17 O16 H173 120.0 120.0
H172 C17 O16 H173 240.0 240.0
C10 C21 C18 O19 179.1 180.3
C15 C18 O19 C21 178.8 179.7
O19 C18 C21 H21 359.1 0.0
C18 O19 C20 H201 233.3 300.0
C18 O19 C20 H202 353.3 60.0
C18 O19 C20 H203 113.3 180.0
C10 C21 C18 H21 180.0 180.3
C15 C18 C21 O19 181.1 180.3
C21 C18 O19 C20 118.0 0.3
C20 O19 C18 C21 118.0 0.3
H201 C20 O19 H202 240.0 240.1
H201 C20 O19 H203 120.0 120.0
H202 C20 O19 H203 240.0 240.0
C07 C24 N23 C22 357.6 0.6
C09 C22 N23 H22 180.0 179.9
C22 N23 C24 N25 179.6 180.3
C07 C24 N23 N25 178.0 180.3
C24 N23 C22 H22 180.0 179.7
N23 C24 N25 H251 165.1 188.9
N23 C24 N25 H252 285.1 8.9
C07 C24 N25 N23 182.0 179.7
H251 N25 C24 H252 240.0 180.0
C04 C28 C27 C26 0.1 0.6
C06 C26 C27 H26 180.0 179.9
C26 C27 C28 C29 179.8 180.3
C28 C27 C26 H27 180.0 179.7
C04 C28 C27 C29 180.3 180.3
C28 C27 C26 H26 180.7 179.7
C26 C27 C28 H27 180.0 180.3
C27 C28 C29 O30 134.0 180.3
C27 C28 C29 O31 326.3 0.3
C04 C28 C29 C27 179.7 179.7
C29 C28 C27 H27 359.8 360.0
O30 C29 C28 O31 167.7 180.0
C28 C29 O31 H31 167.7 180.0
C28 C29 O30 O31 192.5 180.0
O30 C29 O31 H31 0.0 0.0
C28 C29 O31 O30 167.7 180.0
H011 C01 C02 O03 298.0 60.0
C02 C01 H011 H012 120.0 120.0
C02 C01 H011 H013 240.0 240.0
H011 C01 C02 H021 58.0 180.0
H011 C01 C02 H022 181.2 300.0
H012 C01 H011 H013 120.0 120.0
H012 C01 C02 O03 58.0 180.0
C02 C01 H012 H011 240.0 240.0
C02 C01 H012 H013 120.0 119.9
H012 C01 C02 H021 178.0 300.0
H012 C01 C02 H022 301.2 60.0
H011 C01 H012 H013 240.0 239.9
H013 C01 C02 O03 178.0 300.0
C02 C01 H013 H011 120.0 120.0
C02 C01 H013 H012 240.0 240.1
H013 C01 C02 H021 298.0 60.0
H013 C01 C02 H022 61.2 180.0
H011 C01 H013 H012 120.0 120.1
C01 C02 H021 O03 234.2 240.0
H021 C02 C01 H011 58.0 180.0
H021 C02 C01 H012 178.0 300.0
H021 C02 C01 H013 298.0 60.0
C01 C02 H021 H022 117.1 120.0
H021 C02 O03 C04 78.1 60.0
O03 C02 H021 H022 242.9 240.0
C01 C02 H022 O03 124.0 120.0
H022 C02 C01 H011 181.2 300.0
H022 C02 C01 H012 301.2 60.0
H022 C02 C01 H013 61.2 180.0
C01 C02 H022 H021 242.0 240.0
H022 C02 O03 C04 314.9 300.1
O03 C02 H022 H021 118.0 120.0
H05 C05 C04 C28 180.2 180.2
C04 C05 H05 C06 180.0 180.0
H05 C05 C06 C07 358.5 0.0
H05 C05 C06 C26 180.6 180.0
C06 C26 H26 C27 180.0 180.1
H26 C26 C27 C28 180.7 179.7
H26 C26 C27 H27 0.8 0.1
C09 C22 H22 N23 180.0 180.1
H22 C22 N23 C24 180.0 179.7
H11 C11 C10 C21 179.6 180.2
C10 C11 H11 C12 180.0 180.0
H11 C11 C12 O13 1.0 360.0
H11 C11 C12 C15 180.1 180.0
C10 C21 H21 C18 180.0 179.7
O13 C14 H141 H142 120.0 119.9
O13 C14 H141 H143 240.0 240.0
H142 C14 H141 H143 120.0 120.0
O13 C14 H142 H141 240.0 240.0
O13 C14 H142 H143 120.0 120.0
H141 C14 H142 H143 240.0 240.0
O13 C14 H143 H141 120.0 120.0
O13 C14 H143 H142 240.0 240.0
H141 C14 H143 H142 120.0 120.0
O16 C17 H171 H172 120.0 120.0
O16 C17 H171 H173 240.0 240.0
H172 C17 H171 H173 120.0 120.0
O16 C17 H172 H171 240.0 240.0
O16 C17 H172 H173 120.0 120.0
H171 C17 H172 H173 240.0 240.0
O16 C17 H173 H171 120.0 120.0
O16 C17 H173 H172 240.0 240.0
H171 C17 H173 H172 120.0 120.0
O19 C20 H201 H202 120.0 120.0
O19 C20 H201 H203 240.0 240.0
H202 C20 H201 H203 120.0 120.0
O19 C20 H202 H201 240.0 240.0
O19 C20 H202 H203 120.0 120.0
H201 C20 H202 H203 240.0 240.0
O19 C20 H203 H201 120.0 120.0
O19 C20 H203 H202 240.0 240.0
H201 C20 H203 H202 120.0 120.0
C24 N25 H251 H252 120.0 180.0
C24 N25 H252 H251 240.0 180.0
C26 C27 H27 C28 180.0 179.7
H27 C27 C26 H26 0.8 0.1
H27 C27 C28 C29 359.8 360.0