PDB Chemical Component OK3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OK3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.419 1.469
C02 C03 1.528 1.507
C03 C04 1.388 1.383
C03 C08 1.398 1.383
C04 C05 1.406 1.379
C05 C06 1.394 1.396
C06 C07 1.383 1.395
C06 C09 1.542 1.478
C07 C08 1.388 1.379
C09 O10 1.227 1.216
C09 N11 1.448 1.348
N11 C12 1.449 1.465
C12 C13 1.476 1.533
C12 B17 1.666 1.602
C13 C14 1.516 1.509
C14 C15 1.380 1.382
C14 C23 1.392 1.385
C15 O16 1.469 1.353
C15 C20 1.402 1.408
O16 B17 1.420 1.361
B17 O18 1.680 1.367
B17 O19 1.664 1.368
C20 C21 1.390 1.396
C20 C24 1.516 1.474
C21 C22 1.410 1.378
C22 C23 1.407 1.384
C24 O25 1.258 1.215
C24 O26 1.263 1.347
N01 H011 1.000 1.010
N01 H012 1.000 1.010
C02 H021 1.099 1.090
C02 H022 1.100 1.090
C04 H04 1.080 1.081
C08 H08 1.080 1.081
C05 H05 1.080 1.080
C07 H07 1.080 1.081
N11 H11 1.000 0.970
C12 H12 1.100 1.090
C13 H131 1.100 1.090
C13 H132 1.100 1.091
C23 H23 1.080 1.080
O18 H18 0.950 0.967
O19 H19 0.950 0.968
C21 H21 1.080 1.080
C22 H22 1.080 1.080
O26 H26 0.950 0.967

Bond Angles for OK3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N01 C02 C03 109.8 109.5
C02 N01 H011 109.5 111.0
C02 N01 H012 109.5 111.0
N01 C02 H021 109.4 109.5
N01 C02 H022 109.4 109.5
C02 C03 C04 120.5 119.9
C02 C03 C08 120.1 119.9
C03 C02 H021 109.4 109.5
C03 C02 H022 109.4 109.5
C04 C03 C08 119.5 120.3
C03 C04 C05 120.2 120.2
C03 C04 H04 119.9 119.9
C03 C08 C07 119.4 120.1
C03 C08 H08 120.3 119.9
C04 C05 C06 120.3 119.8
C05 C04 H04 119.9 119.9
C04 C05 H05 119.9 120.1
C05 C06 C07 118.5 119.7
C05 C06 C09 119.6 120.1
C06 C05 H05 119.9 120.1
C07 C06 C09 121.6 120.2
C06 C07 C08 122.0 119.9
C06 C07 H07 119.0 120.1
C06 C09 O10 120.4 120.0
C06 C09 N11 121.8 120.0
C07 C08 H08 120.3 119.9
C08 C07 H07 119.0 120.1
O10 C09 N11 117.8 120.0
C09 N11 C12 120.9 120.0
C09 N11 H11 119.6 120.0
N11 C12 C13 118.4 109.9
N11 C12 B17 101.3 109.8
C12 N11 H11 119.6 120.0
N11 C12 H12 108.2 109.8
C13 C12 B17 114.4 107.6
C12 C13 C14 111.6 109.1
C13 C12 H12 107.9 109.8
C12 C13 H131 108.9 109.5
C12 C13 H132 108.9 109.5
C12 B17 O16 114.6 108.6
C12 B17 O18 111.3 109.6
C12 B17 O19 112.9 109.6
B17 C12 H12 105.8 109.9
C13 C14 C15 121.3 121.6
C13 C14 C23 117.7 118.3
C14 C13 H131 108.9 109.6
C14 C13 H132 108.9 109.5
C15 C14 C23 121.0 120.1
C14 C15 O16 119.3 123.0
C14 C15 C20 121.0 119.3
C14 C23 C22 118.6 120.8
C14 C23 H23 120.7 119.6
O16 C15 C20 119.7 117.7
C15 O16 B17 109.7 116.6
C15 C20 C21 118.8 120.0
C15 C20 C24 119.0 120.0
O16 B17 O18 106.0 109.6
O16 B17 O19 104.3 109.6
O18 B17 O19 107.3 109.8
B17 O18 H18 109.5 114.0
B17 O19 H19 109.5 114.0
C21 C20 C24 122.1 120.0
C20 C21 C22 120.3 119.8
C20 C21 H21 119.8 120.1
C20 C24 O25 116.6 120.0
C20 C24 O26 124.0 120.0
C21 C22 C23 120.2 120.1
C22 C21 H21 119.8 120.1
C21 C22 H22 119.9 119.9
C22 C23 H23 120.7 119.6
C23 C22 H22 119.9 120.0
O25 C24 O26 119.2 120.0
C24 O26 H26 109.5 117.0
H011 N01 H012 109.5 111.0
H021 C02 H022 109.5 109.5
H131 C13 H132 109.5 109.6

Torsion Angles for OK3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N01 C02 C03 C04 86.2 90.0
N01 C02 C03 C08 266.6 269.8
C03 C02 N01 H021 239.9 240.0
C03 C02 N01 H022 120.0 120.0
H011 N01 C02 H012 240.0 236.1
H021 C02 N01 H022 240.1 240.0
C03 C02 N01 H011 180.0 180.0
C03 C02 N01 H012 300.0 303.9
N01 C02 C03 H021 120.0 120.0
N01 C02 C03 H022 240.0 240.0
C04 C03 C02 C08 179.6 180.2
C02 C03 C04 C05 180.3 180.0
C02 C03 C04 H04 0.3 360.0
C02 C03 C08 C07 179.5 179.8
C02 C03 C08 H08 359.5 360.0
H021 C02 C03 H022 119.9 120.0
C02 C03 C04 C08 180.4 179.8
C04 C03 C02 H021 326.1 330.0
C04 C03 C02 H022 206.2 210.0
C04 C03 C08 C07 359.9 359.6
C04 C03 C08 H08 179.9 179.8
C03 C04 C05 C06 358.6 0.1
C05 C04 C03 H04 180.0 180.0
C03 C04 C05 H05 178.6 180.0
C02 C03 C08 C04 179.6 180.2
C08 C03 C02 H021 146.5 149.8
C08 C03 C02 H022 26.6 29.8
C08 C03 C04 C05 359.9 0.2
C08 C03 C04 H04 179.9 180.2
C06 C07 C08 C03 1.9 0.4
C07 C08 C03 H08 180.0 179.8
C03 C08 C07 H07 181.9 180.3
C05 C04 C03 C08 359.9 0.2
C03 C04 C05 H04 180.0 180.0
C04 C05 C06 C07 3.1 359.9
C04 C05 C06 C09 177.9 180.0
C06 C05 C04 H05 180.0 180.0
C06 C05 C04 H04 178.6 180.1
C04 C05 C06 H05 180.0 180.0
C07 C06 C05 C09 185.2 179.9
C05 C06 C07 C08 356.6 359.9
C05 C06 C07 H07 176.6 180.0
C05 C06 C09 O10 17.4 360.0
C05 C06 C09 N11 200.9 180.0
C03 C08 C07 C06 1.9 0.4
C05 C06 C07 C09 174.7 180.1
C07 C06 C05 H05 183.1 179.9
C07 C06 C09 O10 192.0 180.1
C07 C06 C09 N11 15.5 0.0
C06 C07 C08 H08 181.9 180.2
C08 C07 C06 H07 180.0 179.9
C05 C06 C09 C07 185.4 179.9
C09 C06 C05 H05 357.9 0.0
C09 C06 C07 C08 181.9 179.8
C09 C06 C07 H07 2.0 359.9
O10 C09 C06 N11 176.6 180.0
C06 C09 N11 C12 174.4 180.0
C06 C09 N11 H11 354.4 359.9
C03 C08 C07 H08 180.0 180.2
C08 C07 C06 C09 181.9 179.8
C06 C07 C08 H07 180.0 180.1
C06 C09 O10 N11 183.3 180.0
O10 C09 N11 C12 357.7 0.0
O10 C09 N11 H11 177.7 179.9
C06 C09 N11 O10 176.6 180.0
C09 N11 C12 C13 92.1 135.0
C09 N11 C12 B17 218.1 253.2
C12 N11 C09 H11 180.0 180.1
C09 N11 C12 H12 329.1 14.1
C09 N11 C12 H11 180.0 179.9
C13 C12 N11 B17 234.1 241.8
N11 C12 C13 C14 91.8 164.3
C13 C12 N11 H12 123.0 120.9
N11 C12 C13 H131 212.1 284.2
N11 C12 C13 H132 331.5 44.5
N11 C12 B17 O16 216.8 174.7
N11 C12 B17 O18 96.7 54.9
N11 C12 B17 O19 336.0 294.4
B17 C12 N11 H12 249.0 239.1
N11 C12 C13 B17 119.4 119.5
C13 C12 N11 H11 272.2 315.1
N11 C12 C13 H12 236.8 239.1
C13 C12 B17 O16 345.4 294.2
C13 C12 B17 O18 225.2 174.5
C13 C12 B17 O19 104.6 54.0
B17 C12 C13 H12 117.4 119.6
C12 C13 C14 C15 36.2 344.2
C12 C13 C14 C23 217.2 164.2
C14 C13 C12 H131 239.7 240.1
C14 C13 C12 H132 120.3 119.9
H131 C13 C12 H132 240.6 239.8
N11 C12 B17 C13 231.4 240.4
B17 C12 N11 H11 38.1 73.3
N11 C12 B17 H12 112.8 120.9
B17 C12 C13 C14 332.4 44.8
C13 C12 B17 H12 241.4 240.5
B17 C12 C13 H131 92.7 164.7
B17 C12 C13 H132 212.1 284.9
C15 O16 B17 C12 50.9 52.6
O16 B17 C12 O18 120.1 119.8
O16 B17 C12 O19 240.8 240.3
O18 B17 C12 O19 120.7 120.5
C12 B17 O18 H18 180.0 180.0
C12 B17 O19 H19 180.0 180.0
C14 C13 C12 B17 332.4 44.8
C14 C13 C12 H12 215.0 285.2
C12 C13 C14 H131 120.3 119.9
C12 C13 C14 H132 239.7 240.1
C15 C14 C13 C23 178.9 180.0
C13 C14 C15 O16 1.6 0.5
C13 C14 C15 C20 180.2 180.3
C13 C14 C23 C22 178.7 179.8
C13 C14 C23 H23 358.7 359.8
H131 C13 C14 H132 119.4 120.2
C13 C14 C15 C23 181.1 180.0
C15 C14 C13 H131 275.8 224.3
C15 C14 C13 H132 156.4 104.1
C15 C14 C23 C22 359.7 359.8
C15 C14 C23 H23 179.7 179.8
O16 C15 C14 C20 181.4 180.2
C14 C15 O16 B17 313.3 338.8
C14 C15 C20 C21 2.1 359.8
C14 C15 C20 C24 177.4 179.7
C13 C14 C23 C15 178.9 180.0
C23 C14 C13 H131 96.9 44.3
C23 C14 C13 H132 337.5 284.0
C23 C14 C15 O16 180.5 180.5
C23 C14 C15 C20 359.1 0.3
C21 C22 C23 C14 0.2 360.0
C22 C23 C14 H23 180.0 180.0
C14 C23 C22 H22 180.3 180.1
C12 B17 O16 C15 50.9 52.6
O16 C15 C14 C23 180.5 180.5
C14 C15 O16 C20 178.6 179.8
O16 C15 C20 C21 180.7 179.6
O16 C15 C20 C24 356.0 359.5
C15 O16 B17 O18 173.9 172.4
C15 O16 B17 O19 287.0 293.0
C20 C15 C14 C23 359.1 0.3
C14 C15 C20 O16 181.4 180.2
C20 C15 O16 B17 134.7 159.0
C21 C20 C15 C24 184.7 180.1
C15 C20 C21 C22 357.9 360.0
C15 C20 C21 H21 177.9 180.0
C15 C20 C24 O25 217.1 0.0
C15 C20 C24 O26 31.8 180.0
C12 B17 O16 O18 236.9 240.3
C12 B17 O16 O19 123.9 119.7
O16 B17 C12 H12 104.0 53.8
B17 O16 C15 C20 134.7 159.0
O18 B17 O16 O19 246.9 239.4
O16 B17 O18 H18 54.9 60.9
O16 B17 O19 H19 305.0 299.1
C12 B17 O18 O16 125.1 119.1
C12 B17 O18 O19 236.1 239.6
O18 B17 C12 H12 343.8 294.0
O16 B17 O18 O19 111.0 120.5
O18 B17 O19 H19 57.1 59.6
C12 B17 O19 O16 235.0 241.0
C12 B17 O19 O18 122.9 120.4
O19 B17 C12 H12 223.2 173.5
O16 B17 O19 O18 247.9 239.5
O19 B17 O18 H18 303.9 300.4
C15 C20 C21 C24 175.1 179.9
C21 C20 C24 O25 32.2 180.0
C21 C20 C24 O26 206.9 359.9
C20 C21 C22 C23 1.0 0.1
C22 C21 C20 H21 180.0 179.9
C20 C21 C22 H22 181.0 180.1
C15 C20 C24 C21 184.9 180.1
C24 C20 C21 C22 182.8 180.1
C24 C20 C21 H21 2.8 0.1
O25 C24 C20 O26 185.3 180.0
C20 C24 O26 H26 185.4 180.0
C14 C23 C22 C21 0.2 360.0
C22 C21 C20 C24 182.8 180.1
C20 C21 C22 H21 180.0 180.1
C21 C22 C23 H23 180.2 180.0
C23 C22 C21 H22 180.0 180.1
C14 C23 C22 H23 180.0 180.0
C23 C22 C21 H21 180.9 180.1
C21 C22 C23 H22 180.0 179.9
C20 C24 O25 O26 175.0 180.0
O25 C24 O26 H26 360.0 359.9
C20 C24 O26 O25 185.4 180.0
H011 N01 C02 C03 180.0 180.0
C02 N01 H011 H012 120.0 123.9
H011 N01 C02 H021 300.0 300.0
H011 N01 C02 H022 60.0 60.0
H012 N01 C02 C03 300.0 303.9
C02 N01 H012 H011 240.0 236.1
H012 N01 C02 H021 60.1 63.9
H012 N01 C02 H022 180.0 183.9
N01 C02 H021 C03 239.7 240.0
H021 C02 N01 H011 300.0 300.0
H021 C02 N01 H012 60.1 63.9
N01 C02 H021 H022 119.8 120.0
H021 C02 C03 C04 326.1 330.0
H021 C02 C03 C08 146.5 149.8
C03 C02 H021 H022 240.2 240.0
N01 C02 H022 C03 120.3 120.0
H022 C02 N01 H011 60.0 60.0
H022 C02 N01 H012 180.0 183.9
N01 C02 H022 H021 240.2 240.0
H022 C02 C03 C04 206.2 210.0
H022 C02 C03 C08 26.6 29.8
C03 C02 H022 H021 119.8 120.0
H04 C04 C03 C08 179.9 180.2
C03 C04 H04 C05 180.0 180.0
H04 C04 C05 C06 178.6 180.1
H04 C04 C05 H05 358.6 0.0
C03 C08 H08 C07 180.0 179.8
H08 C08 C07 H07 1.9 0.1
C04 C05 H05 C06 180.0 180.0
H05 C05 C04 H04 358.6 0.0
H05 C05 C06 C07 183.1 179.9
H05 C05 C06 C09 357.9 0.0
H07 C07 C06 C09 2.0 359.9
C06 C07 H07 C08 180.0 179.9
H07 C07 C08 H08 1.9 0.1
C09 N11 H11 C12 180.0 180.1
H11 N11 C12 C13 272.2 315.1
H11 N11 C12 B17 38.1 73.3
H11 N11 C12 H12 149.1 194.2
N11 C12 H12 C13 129.2 120.9
N11 C12 H12 B17 252.1 239.1
H12 C12 N11 H11 149.1 194.2
C13 C12 H12 B17 122.8 118.2
H12 C12 C13 C14 215.0 285.2
H12 C12 C13 H131 335.3 45.1
H12 C12 C13 H132 94.7 165.3
H12 C12 B17 O16 104.0 53.8
H12 C12 B17 O18 343.8 294.0
H12 C12 B17 O19 223.2 173.5
H131 C13 C12 B17 92.7 164.7
C12 C13 H131 C14 238.1 240.4
H131 C13 C12 H12 335.3 45.1
C12 C13 H131 H132 119.0 120.2
H131 C13 C14 C15 275.8 224.3
H131 C13 C14 C23 96.9 44.3
C14 C13 H131 H132 241.0 239.8
H132 C13 C12 B17 212.1 284.9
C12 C13 H132 C14 121.9 119.6
H132 C13 C12 H12 94.7 165.3
C12 C13 H132 H131 241.0 239.8
H132 C13 C14 C15 156.4 104.1
H132 C13 C14 C23 337.5 284.0
C14 C13 H132 H131 119.0 120.2
C14 C23 H23 C22 180.0 180.0
H23 C23 C22 H22 0.3 0.0
H18 O18 B17 O19 303.9 300.4
H21 C21 C20 C24 2.8 0.1
C20 C21 H21 C22 180.0 179.9
H21 C21 C22 C23 180.9 180.1
H21 C21 C22 H22 0.9 0.0
C21 C22 H22 C23 180.0 180.1
H22 C22 C21 H21 0.9 0.0
H22 C22 C23 H23 0.3 0.0