PDB Chemical Component OJP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OJP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N9 |
CB |
1.382 |
1.369 |
| N9 |
C1 |
1.344 |
1.351 |
| CB |
CA |
1.392 |
1.348 |
| C6 |
C7 |
1.525 |
1.530 |
| C6 |
C5 |
1.523 |
1.531 |
| C7 |
C8 |
1.510 |
1.530 |
| C1 |
C5 |
1.493 |
1.506 |
| C1 |
N |
1.338 |
1.305 |
| CA |
N |
1.391 |
1.341 |
| CA |
C |
1.473 |
1.507 |
| O |
C |
1.430 |
1.429 |
| N10 |
C8 |
1.439 |
1.465 |
| N10 |
C4 |
1.376 |
1.348 |
| C3 |
C4 |
1.472 |
1.470 |
| C3 |
C2 |
1.333 |
1.331 |
| C4 |
O11 |
1.210 |
1.216 |
| CB |
H1 |
1.079 |
1.080 |
| C2 |
H2 |
1.080 |
1.081 |
| C2 |
H3 |
1.080 |
1.080 |
| C3 |
H4 |
1.080 |
1.080 |
| C |
H5 |
1.100 |
1.090 |
| C |
H6 |
1.100 |
1.090 |
| C5 |
H7 |
1.100 |
1.090 |
| C5 |
H8 |
1.099 |
1.090 |
| C6 |
H9 |
1.101 |
1.090 |
| C6 |
H10 |
1.100 |
1.091 |
| C7 |
H11 |
1.100 |
1.090 |
| C7 |
H12 |
1.099 |
1.091 |
| C8 |
H13 |
1.100 |
1.091 |
| C8 |
H14 |
1.099 |
1.089 |
| N9 |
H15 |
1.000 |
0.969 |
| N10 |
H17 |
1.000 |
0.970 |
| O |
H18 |
0.950 |
0.967 |
Bond Angles for OJP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N9 |
CB |
H1 |
125.6 |
126.6 |
| N9 |
C1 |
N |
107.1 |
108.7 |
| CB |
CA |
N |
103.2 |
108.0 |
| CB |
CA |
C |
131.7 |
126.0 |
| CA |
CB |
H1 |
125.6 |
126.6 |
| C6 |
C7 |
C8 |
115.1 |
109.5 |
| C7 |
C6 |
H9 |
108.6 |
109.5 |
| C7 |
C6 |
H10 |
108.7 |
109.4 |
| C6 |
C7 |
H11 |
108.1 |
109.5 |
| C6 |
C7 |
H12 |
108.0 |
109.4 |
| C6 |
C5 |
H7 |
108.1 |
109.5 |
| C6 |
C5 |
H8 |
108.1 |
109.5 |
| C8 |
C7 |
H11 |
108.1 |
109.5 |
| C8 |
C7 |
H12 |
108.0 |
109.5 |
| C7 |
C8 |
H13 |
108.4 |
109.5 |
| C7 |
C8 |
H14 |
108.4 |
109.5 |
| C5 |
C1 |
N |
125.1 |
125.7 |
| C1 |
C5 |
H7 |
108.1 |
109.5 |
| C1 |
C5 |
H8 |
108.1 |
109.5 |
| CA |
N |
C1 |
112.1 |
109.3 |
| C |
CA |
N |
125.2 |
126.0 |
| CA |
C |
H5 |
109.1 |
109.4 |
| CA |
C |
H6 |
109.1 |
109.5 |
| O |
C |
H5 |
109.1 |
109.5 |
| O |
C |
H6 |
109.1 |
109.5 |
| N10 |
C8 |
H13 |
108.4 |
109.4 |
| N10 |
C8 |
H14 |
108.4 |
109.5 |
| N10 |
C4 |
O11 |
123.8 |
120.0 |
| C3 |
C4 |
O11 |
122.1 |
120.0 |
| C4 |
C3 |
H4 |
122.4 |
120.1 |
| C3 |
C2 |
H2 |
120.0 |
120.0 |
| C3 |
C2 |
H3 |
120.0 |
120.0 |
| H2 |
C2 |
H3 |
120.0 |
120.0 |
| H5 |
C |
H6 |
109.5 |
109.5 |
| H7 |
C5 |
H8 |
109.4 |
109.4 |
| H9 |
C6 |
H10 |
109.5 |
109.5 |
| H11 |
C7 |
H12 |
109.5 |
109.5 |
| H13 |
C8 |
H14 |
109.5 |
109.5 |
Torsion Angles for OJP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N9 |
CB |
CA |
N |
1.0 |
0.3 |
| CA |
CB |
N9 |
H1 |
180.0 |
179.7 |
| C1 |
N9 |
CB |
H1 |
179.1 |
180.3 |
| C5 |
C1 |
N9 |
N |
179.4 |
180.3 |
| N9 |
C1 |
C5 |
H7 |
277.8 |
244.6 |
| N9 |
C1 |
C5 |
H8 |
159.4 |
4.6 |
| CA |
N |
C1 |
N9 |
0.3 |
0.4 |
| N9 |
CB |
CA |
H1 |
180.0 |
180.3 |
| CB |
CA |
N |
C1 |
359.2 |
359.6 |
| C |
CA |
CB |
N |
180.2 |
179.9 |
| CB |
CA |
C |
H5 |
112.3 |
120.0 |
| CB |
CA |
C |
H6 |
231.9 |
240.0 |
| C7 |
C6 |
C5 |
H7 |
300.2 |
60.0 |
| C7 |
C6 |
C5 |
H8 |
58.6 |
300.0 |
| C8 |
C7 |
C6 |
H11 |
239.2 |
240.0 |
| C8 |
C7 |
C6 |
H12 |
120.8 |
120.0 |
| C6 |
C7 |
C8 |
H13 |
56.0 |
300.0 |
| C6 |
C7 |
C8 |
H14 |
174.7 |
60.0 |
| H9 |
C6 |
C7 |
H10 |
241.0 |
120.0 |
| H11 |
C7 |
C6 |
H12 |
241.6 |
240.0 |
| C6 |
C5 |
C1 |
N |
217.9 |
305.0 |
| C1 |
C5 |
C6 |
H7 |
239.2 |
120.0 |
| C1 |
C5 |
C6 |
H8 |
120.8 |
240.0 |
| H7 |
C5 |
C6 |
H8 |
241.6 |
119.9 |
| C8 |
C7 |
C6 |
H9 |
51.5 |
60.0 |
| C8 |
C7 |
C6 |
H10 |
170.5 |
300.0 |
| C6 |
C7 |
C8 |
H11 |
120.8 |
120.0 |
| C6 |
C7 |
C8 |
H12 |
239.2 |
240.1 |
| N10 |
C8 |
C7 |
H13 |
239.4 |
240.1 |
| N10 |
C8 |
C7 |
H14 |
120.6 |
120.0 |
| H11 |
C7 |
C8 |
H12 |
118.4 |
120.0 |
| H13 |
C8 |
C7 |
H14 |
241.3 |
240.0 |
| N9 |
C1 |
C5 |
N |
180.7 |
179.6 |
| C6 |
C5 |
C1 |
H7 |
120.8 |
240.0 |
| C6 |
C5 |
C1 |
H8 |
239.2 |
120.0 |
| CA |
N |
C1 |
C5 |
180.9 |
180.1 |
| H7 |
C5 |
C1 |
H8 |
118.4 |
240.0 |
| N |
C1 |
C5 |
H7 |
97.1 |
65.0 |
| N |
C1 |
C5 |
H8 |
338.7 |
184.9 |
| C |
CA |
N |
C1 |
179.0 |
179.6 |
| N9 |
C1 |
N |
CA |
0.3 |
0.4 |
| CB |
CA |
N |
C |
180.1 |
179.9 |
| N |
CA |
CB |
H1 |
181.0 |
180.0 |
| C5 |
C1 |
N |
CA |
180.9 |
180.1 |
| N |
CA |
C |
H5 |
292.5 |
300.0 |
| N |
CA |
C |
H6 |
52.1 |
60.0 |
| CB |
CA |
C |
N |
179.8 |
180.1 |
| C |
CA |
CB |
H1 |
1.1 |
359.9 |
| O |
C |
CA |
H5 |
239.8 |
240.0 |
| O |
C |
CA |
H6 |
120.2 |
120.0 |
| H5 |
C |
CA |
H6 |
240.4 |
240.0 |
| CA |
C |
O |
H5 |
120.2 |
120.0 |
| CA |
C |
O |
H6 |
239.8 |
240.0 |
| H5 |
C |
O |
H6 |
119.5 |
120.0 |
| N10 |
C8 |
C7 |
H11 |
174.5 |
60.0 |
| N10 |
C8 |
C7 |
H12 |
56.1 |
300.0 |
| C7 |
C8 |
N10 |
H13 |
120.6 |
119.9 |
| C7 |
C8 |
N10 |
H14 |
239.4 |
240.0 |
| C8 |
N10 |
C4 |
O11 |
356.5 |
359.9 |
| H13 |
C8 |
N10 |
H14 |
118.8 |
120.1 |
| C3 |
C4 |
N10 |
O11 |
180.7 |
180.1 |
| N10 |
C4 |
C3 |
H4 |
41.7 |
360.0 |
| N10 |
C4 |
C3 |
O11 |
179.3 |
179.9 |
| C4 |
C3 |
C2 |
H2 |
360.0 |
0.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
180.0 |
180.1 |
| O11 |
C4 |
C3 |
H4 |
222.4 |
180.0 |
| H1 |
CB |
CA |
N |
181.0 |
180.0 |
| H1 |
CB |
CA |
C |
1.1 |
359.9 |
| C3 |
C2 |
H2 |
H3 |
180.0 |
179.9 |
| C3 |
C2 |
H3 |
H2 |
180.0 |
180.1 |
| H4 |
C3 |
C4 |
O11 |
222.4 |
180.0 |
| H4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| H4 |
C3 |
C2 |
H3 |
360.0 |
360.0 |
| H5 |
C |
CA |
N |
292.5 |
300.0 |
| CA |
C |
H5 |
H6 |
119.3 |
120.0 |
| O |
C |
H5 |
H6 |
240.7 |
240.0 |
| H6 |
C |
CA |
N |
52.1 |
60.0 |
| CA |
C |
H6 |
H5 |
240.7 |
240.0 |
| O |
C |
H6 |
H5 |
119.3 |
120.0 |
| C6 |
C5 |
H7 |
H8 |
117.5 |
240.0 |
| H7 |
C5 |
C1 |
N |
97.1 |
65.0 |
| C1 |
C5 |
H7 |
H8 |
242.5 |
120.0 |
| C6 |
C5 |
H8 |
H7 |
242.5 |
120.0 |
| H8 |
C5 |
C1 |
N |
338.7 |
184.9 |
| C1 |
C5 |
H8 |
H7 |
117.5 |
240.0 |
| H9 |
C6 |
C7 |
C8 |
51.5 |
60.0 |
| C7 |
C6 |
H9 |
H10 |
118.5 |
240.0 |
| H9 |
C6 |
C7 |
H11 |
172.3 |
180.0 |
| H9 |
C6 |
C7 |
H12 |
290.7 |
300.0 |
| H9 |
C6 |
C5 |
H7 |
179.7 |
180.0 |
| H9 |
C6 |
C5 |
H8 |
298.1 |
60.1 |
| H10 |
C6 |
C7 |
C8 |
170.5 |
300.0 |
| C7 |
C6 |
H10 |
H9 |
241.5 |
120.0 |
| H10 |
C6 |
C7 |
H11 |
291.3 |
60.0 |
| H10 |
C6 |
C7 |
H12 |
49.7 |
180.0 |
| H10 |
C6 |
C5 |
H7 |
60.7 |
300.0 |
| H10 |
C6 |
C5 |
H8 |
179.1 |
180.0 |
| C6 |
C7 |
H11 |
C8 |
234.9 |
240.0 |
| H11 |
C7 |
C6 |
H9 |
172.3 |
180.0 |
| H11 |
C7 |
C6 |
H10 |
291.3 |
60.0 |
| C6 |
C7 |
H11 |
H12 |
117.5 |
119.9 |
| C8 |
C7 |
H11 |
H12 |
242.6 |
239.9 |
| H11 |
C7 |
C8 |
H13 |
295.1 |
179.9 |
| H11 |
C7 |
C8 |
H14 |
53.8 |
300.0 |
| C6 |
C7 |
H12 |
C8 |
125.1 |
120.0 |
| H12 |
C7 |
C6 |
H9 |
290.7 |
300.0 |
| H12 |
C7 |
C6 |
H10 |
49.7 |
180.0 |
| C6 |
C7 |
H12 |
H11 |
242.5 |
240.0 |
| C8 |
C7 |
H12 |
H11 |
117.5 |
120.0 |
| H12 |
C7 |
C8 |
H13 |
176.8 |
59.9 |
| H12 |
C7 |
C8 |
H14 |
295.5 |
179.9 |
| H13 |
C8 |
C7 |
H11 |
295.1 |
179.9 |
| H13 |
C8 |
C7 |
H12 |
176.8 |
59.9 |
| C7 |
C8 |
H13 |
H14 |
118.1 |
120.0 |
| N10 |
C8 |
H13 |
H14 |
241.9 |
240.0 |
| H14 |
C8 |
C7 |
H11 |
53.8 |
300.0 |
| H14 |
C8 |
C7 |
H12 |
295.5 |
179.9 |
| C7 |
C8 |
H14 |
H13 |
241.9 |
240.0 |
| N10 |
C8 |
H14 |
H13 |
118.1 |
120.0 |
| H15 |
N9 |
CB |
H1 |
359.2 |
0.3 |
| H15 |
N9 |
C1 |
N |
180.3 |
179.8 |
| H17 |
N10 |
C8 |
H13 |
178.7 |
240.1 |
| H17 |
N10 |
C8 |
H14 |
59.9 |
120.0 |
| H17 |
N10 |
C4 |
O11 |
176.4 |
179.9 |
| H18 |
O |
C |
H5 |
59.8 |
60.0 |
| H18 |
O |
C |
H6 |
300.2 |
300.0 |