PDB Chemical Component OIL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OIL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
CA |
1.511 |
1.507 |
| C |
OXT |
1.430 |
1.342 |
| O |
C |
1.227 |
1.208 |
| O1 |
HO1 |
0.950 |
0.967 |
| CA |
O1 |
1.455 |
1.429 |
| CA |
CB |
1.524 |
1.531 |
| CA |
HA |
1.100 |
1.089 |
| CB |
CG1 |
1.533 |
1.529 |
| CB |
HB |
1.100 |
1.090 |
| CD1 |
HD1 |
1.100 |
1.090 |
| CD1 |
HD1A |
1.100 |
1.090 |
| CD1 |
HD1B |
1.100 |
1.090 |
| CG1 |
CD1 |
1.525 |
1.529 |
| CG1 |
HG1 |
1.100 |
1.090 |
| CG1 |
HG1A |
1.100 |
1.090 |
| CG2 |
CB |
1.539 |
1.530 |
| CG2 |
HG2 |
1.100 |
1.090 |
| CG2 |
HG2A |
1.100 |
1.090 |
| CG2 |
HG2B |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for OIL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
119.4 |
120.0 |
| O |
C |
CA |
121.2 |
120.0 |
| C |
CA |
O1 |
108.2 |
109.5 |
| C |
CA |
CB |
112.1 |
109.5 |
| C |
CA |
HA |
107.3 |
109.5 |
| O |
C |
OXT |
119.4 |
120.1 |
| C |
OXT |
HXT |
109.5 |
116.9 |
| CA |
O1 |
HO1 |
109.5 |
114.0 |
| CB |
CA |
HA |
110.1 |
109.5 |
| CA |
CB |
CG1 |
113.6 |
109.5 |
| CA |
CB |
HB |
103.6 |
109.5 |
| CG1 |
CB |
HB |
105.2 |
109.5 |
| CB |
CG1 |
CD1 |
114.6 |
109.5 |
| CB |
CG1 |
HG1 |
107.8 |
109.5 |
| CB |
CG1 |
HG1A |
107.8 |
109.5 |
| CG2 |
CB |
HB |
102.9 |
109.5 |
| HD1 |
CD1 |
HD1A |
109.5 |
109.4 |
| HD1 |
CD1 |
HD1B |
109.5 |
109.5 |
| CG1 |
CD1 |
HD1 |
109.5 |
109.5 |
| HD1A |
CD1 |
HD1B |
109.5 |
109.4 |
| CG1 |
CD1 |
HD1A |
109.5 |
109.5 |
| CG1 |
CD1 |
HD1B |
109.5 |
109.5 |
| HG1 |
CG1 |
HG1A |
111.1 |
109.4 |
| HG2 |
CG2 |
HG2A |
109.5 |
109.4 |
| HG2 |
CG2 |
HG2B |
109.4 |
109.5 |
| HG2A |
CG2 |
HG2B |
109.5 |
109.5 |
Torsion Angles for OIL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
180.0 |
179.7 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| C |
CA |
O1 |
HO1 |
16.7 |
60.0 |
| CB |
CA |
C |
HA |
239.0 |
240.0 |
| C |
CA |
CB |
CG1 |
163.6 |
180.0 |
| C |
CA |
CB |
HB |
277.3 |
300.0 |
| O |
C |
OXT |
CA |
180.0 |
180.3 |
| OXT |
C |
CA |
O1 |
139.3 |
175.0 |
| OXT |
C |
CA |
CB |
255.0 |
295.0 |
| OXT |
C |
CA |
HA |
16.0 |
55.0 |
| CA |
C |
O |
OXT |
180.0 |
180.3 |
| O |
C |
CA |
O1 |
319.2 |
354.8 |
| O |
C |
CA |
CB |
74.9 |
114.7 |
| O |
C |
CA |
HA |
195.9 |
234.8 |
| O |
C |
OXT |
HXT |
360.0 |
0.3 |
| O1 |
CA |
C |
OXT |
139.3 |
175.0 |
| C |
CA |
O1 |
CB |
120.1 |
120.0 |
| C |
CA |
O1 |
HA |
240.8 |
240.0 |
| CB |
CA |
C |
OXT |
255.0 |
295.0 |
| C |
CA |
CB |
O1 |
242.6 |
240.0 |
| C |
CA |
CB |
HA |
119.4 |
120.1 |
| CB |
CA |
O1 |
HO1 |
256.6 |
300.0 |
| CG1 |
CB |
CA |
HB |
246.4 |
240.0 |
| CA |
CB |
CG1 |
CD1 |
169.7 |
175.0 |
| CA |
CB |
CG1 |
HG1 |
289.7 |
295.1 |
| CA |
CB |
CG1 |
HG1A |
49.8 |
55.0 |
| CG2 |
CB |
CA |
HB |
111.7 |
120.0 |
| HA |
CA |
C |
OXT |
16.0 |
55.0 |
| C |
CA |
HA |
O1 |
119.7 |
120.0 |
| C |
CA |
HA |
CB |
237.7 |
240.0 |
| HA |
CA |
O1 |
HO1 |
135.8 |
180.0 |
| HA |
CA |
CB |
CG1 |
44.3 |
60.0 |
| HA |
CA |
CB |
HB |
157.9 |
180.0 |
| CG1 |
CB |
CA |
HA |
44.3 |
60.0 |
| CA |
CB |
CG1 |
HB |
112.7 |
120.0 |
| CG2 |
CB |
CG1 |
HB |
247.9 |
240.0 |
| CB |
CG1 |
CD1 |
HD1 |
180.0 |
300.0 |
| CB |
CG1 |
CD1 |
HD1A |
300.0 |
60.0 |
| CB |
CG1 |
CD1 |
HD1B |
60.0 |
180.0 |
| HG1 |
CG1 |
CB |
HG1A |
240.0 |
240.1 |
| HB |
CB |
CA |
HA |
157.9 |
180.0 |
| CA |
CB |
HB |
CG1 |
240.4 |
240.0 |
| HB |
CB |
CG1 |
CD1 |
57.1 |
55.0 |
| HB |
CB |
CG1 |
HG1 |
177.0 |
175.1 |
| HB |
CB |
CG1 |
HG1A |
297.1 |
295.0 |
| HD1A |
CD1 |
HD1 |
HD1B |
120.0 |
119.9 |
| CG1 |
CD1 |
HD1 |
HD1A |
120.0 |
120.0 |
| CG1 |
CD1 |
HD1 |
HD1B |
240.0 |
240.0 |
| HD1 |
CD1 |
HD1A |
HD1B |
240.0 |
240.1 |
| CG1 |
CD1 |
HD1A |
HD1 |
240.0 |
240.0 |
| CG1 |
CD1 |
HD1A |
HD1B |
120.0 |
120.0 |
| HD1 |
CD1 |
HD1B |
HD1A |
120.0 |
119.9 |
| CG1 |
CD1 |
HD1B |
HD1 |
120.0 |
120.1 |
| CG1 |
CD1 |
HD1B |
HD1A |
240.0 |
240.0 |
| CD1 |
CG1 |
CB |
HB |
57.1 |
55.0 |
| CB |
CG1 |
CD1 |
HG1 |
120.0 |
120.0 |
| CB |
CG1 |
CD1 |
HG1A |
240.0 |
240.0 |
| HD1 |
CD1 |
CG1 |
HD1A |
240.0 |
240.0 |
| HD1 |
CD1 |
CG1 |
HD1B |
120.0 |
120.0 |
| HD1A |
CD1 |
CG1 |
HD1B |
240.0 |
240.0 |
| HG1 |
CG1 |
CB |
HB |
177.0 |
175.1 |
| CB |
CG1 |
HG1 |
CD1 |
235.8 |
240.0 |
| CB |
CG1 |
HG1 |
HG1A |
117.9 |
119.9 |
| HG1 |
CG1 |
CD1 |
HD1 |
60.0 |
180.0 |
| HG1 |
CG1 |
CD1 |
HD1A |
180.0 |
300.0 |
| HG1 |
CG1 |
CD1 |
HD1B |
300.0 |
60.0 |
| HG1A |
CG1 |
CB |
HB |
297.1 |
295.0 |
| CB |
CG1 |
HG1A |
CD1 |
124.2 |
120.0 |
| CB |
CG1 |
HG1A |
HG1 |
242.1 |
240.0 |
| HG1A |
CG1 |
CD1 |
HD1 |
300.0 |
60.0 |
| HG1A |
CG1 |
CD1 |
HD1A |
60.0 |
180.0 |
| HG1A |
CG1 |
CD1 |
HD1B |
180.0 |
300.0 |
| CG2 |
CB |
CA |
HA |
269.6 |
299.9 |
| CA |
CB |
CG2 |
HB |
247.9 |
240.0 |
| CG1 |
CB |
CG2 |
HB |
113.4 |
120.0 |
| CG2 |
CB |
CG1 |
HG1 |
65.0 |
55.1 |
| CG2 |
CB |
CG1 |
HG1A |
185.0 |
175.0 |
| HG2 |
CG2 |
CB |
HB |
292.1 |
300.0 |
| HG2A |
CG2 |
HG2 |
HG2B |
120.0 |
120.0 |
| HG2A |
CG2 |
CB |
HB |
52.2 |
60.0 |
| HG2 |
CG2 |
HG2A |
HG2B |
240.0 |
240.0 |
| HG2B |
CG2 |
CB |
HB |
172.2 |
180.0 |
| HG2 |
CG2 |
HG2B |
HG2A |
120.0 |
120.0 |