PDB Chemical Component OHO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OHO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C |
1.314 |
1.347 |
N |
C1 |
1.465 |
1.464 |
N |
HN |
1.021 |
0.969 |
C |
O |
1.194 |
1.215 |
C |
OXT |
1.520 |
1.347 |
OXT |
HXT |
0.950 |
0.967 |
C1 |
C2 |
1.516 |
1.530 |
C1 |
C6 |
1.510 |
1.529 |
C1 |
H1 |
1.114 |
1.091 |
C2 |
C3 |
1.526 |
1.529 |
C2 |
H21 |
1.115 |
1.089 |
C2 |
H22 |
1.114 |
1.090 |
C3 |
C4 |
1.529 |
1.529 |
C3 |
H31 |
1.114 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.511 |
1.529 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.115 |
1.090 |
C5 |
C6 |
1.523 |
1.529 |
C5 |
H51 |
1.116 |
1.089 |
C5 |
H52 |
1.115 |
1.090 |
C6 |
H61 |
1.115 |
1.091 |
C6 |
H62 |
1.115 |
1.090 |
Bond Angles for OHO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
N |
C1 |
120.2 |
120.0 |
C |
N |
HN |
114.5 |
120.0 |
N |
C |
O |
128.5 |
120.0 |
N |
C |
OXT |
121.7 |
120.1 |
C1 |
N |
HN |
125.3 |
120.0 |
N |
C1 |
C2 |
117.5 |
109.5 |
N |
C1 |
C6 |
115.1 |
109.5 |
N |
C1 |
H1 |
99.8 |
109.5 |
O |
C |
OXT |
108.6 |
119.9 |
C |
OXT |
HXT |
121.7 |
120.0 |
C2 |
C1 |
C6 |
113.1 |
109.5 |
C2 |
C1 |
H1 |
102.6 |
109.4 |
C1 |
C2 |
C3 |
110.8 |
109.5 |
C1 |
C2 |
H21 |
111.7 |
109.5 |
C1 |
C2 |
H22 |
111.7 |
109.4 |
C6 |
C1 |
H1 |
106.0 |
109.5 |
C1 |
C6 |
C5 |
110.1 |
109.5 |
C1 |
C6 |
H61 |
112.0 |
109.4 |
C1 |
C6 |
H62 |
112.0 |
109.5 |
C3 |
C2 |
H21 |
111.7 |
109.5 |
C3 |
C2 |
H22 |
111.7 |
109.4 |
C2 |
C3 |
C4 |
111.8 |
109.5 |
C2 |
C3 |
H31 |
111.4 |
109.5 |
C2 |
C3 |
H32 |
111.4 |
109.5 |
H21 |
C2 |
H22 |
98.7 |
109.4 |
C4 |
C3 |
H31 |
111.3 |
109.4 |
C4 |
C3 |
H32 |
111.3 |
109.5 |
C3 |
C4 |
C5 |
109.9 |
109.4 |
C3 |
C4 |
H41 |
112.1 |
109.5 |
C3 |
C4 |
H42 |
112.1 |
109.5 |
H31 |
C3 |
H32 |
99.0 |
109.4 |
C5 |
C4 |
H41 |
112.0 |
109.5 |
C5 |
C4 |
H42 |
112.0 |
109.5 |
C4 |
C5 |
C6 |
110.7 |
109.5 |
C4 |
C5 |
H51 |
111.8 |
109.5 |
C4 |
C5 |
H52 |
111.8 |
109.5 |
H41 |
C4 |
H42 |
98.4 |
109.4 |
C6 |
C5 |
H51 |
111.8 |
109.4 |
C6 |
C5 |
H52 |
111.8 |
109.4 |
C5 |
C6 |
H61 |
111.9 |
109.5 |
C5 |
C6 |
H62 |
111.9 |
109.5 |
H51 |
C5 |
H52 |
98.6 |
109.4 |
H61 |
C6 |
H62 |
98.4 |
109.4 |
Torsion Angles for OHO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N |
C |
HN |
180.0 |
180.1 |
C |
N |
C1 |
C2 |
94.9 |
149.9 |
C |
N |
C1 |
C6 |
232.1 |
270.0 |
C |
N |
C1 |
H1 |
345.0 |
30.0 |
O |
C |
N |
OXT |
194.0 |
180.1 |
N |
C |
OXT |
HXT |
180.0 |
180.0 |
C |
N |
C1 |
HN |
180.0 |
179.9 |
C1 |
N |
C |
O |
11.5 |
0.1 |
C1 |
N |
C |
OXT |
177.5 |
180.0 |
C2 |
C1 |
N |
C6 |
222.8 |
239.9 |
C2 |
C1 |
N |
H1 |
109.9 |
119.9 |
N |
C1 |
C2 |
C3 |
85.2 |
180.0 |
N |
C1 |
C2 |
H21 |
210.5 |
300.1 |
N |
C1 |
C2 |
H22 |
320.0 |
60.0 |
C6 |
C1 |
N |
H1 |
247.1 |
240.0 |
N |
C1 |
C6 |
C5 |
276.2 |
180.0 |
N |
C1 |
C6 |
H61 |
41.4 |
300.0 |
N |
C1 |
C6 |
H62 |
150.9 |
59.9 |
C |
N |
HN |
C1 |
180.0 |
180.1 |
HN |
N |
C |
O |
191.5 |
180.0 |
HN |
N |
C |
OXT |
357.5 |
359.9 |
HN |
N |
C1 |
C2 |
274.9 |
330.0 |
HN |
N |
C1 |
C6 |
52.1 |
90.1 |
HN |
N |
C1 |
H1 |
165.0 |
210.1 |
O |
C |
N |
C1 |
11.5 |
0.1 |
O |
C |
N |
HN |
191.5 |
180.0 |
N |
C |
O |
OXT |
167.5 |
179.9 |
O |
C |
OXT |
HXT |
348.5 |
359.9 |
OXT |
C |
N |
C1 |
177.5 |
180.0 |
OXT |
C |
N |
HN |
357.5 |
359.9 |
N |
C |
OXT |
O |
191.5 |
180.1 |
C2 |
C1 |
N |
HN |
274.9 |
330.0 |
N |
C1 |
C2 |
C6 |
138.0 |
120.1 |
N |
C1 |
C2 |
H1 |
251.7 |
240.1 |
C6 |
C1 |
C2 |
H1 |
113.7 |
120.0 |
C2 |
C1 |
C6 |
C5 |
55.2 |
300.1 |
C2 |
C1 |
C6 |
H61 |
180.5 |
60.1 |
C2 |
C1 |
C6 |
H62 |
290.0 |
180.0 |
C3 |
C2 |
C1 |
H21 |
234.8 |
239.9 |
C3 |
C2 |
C1 |
H22 |
125.2 |
119.9 |
C1 |
C2 |
C3 |
C4 |
53.0 |
300.1 |
C1 |
C2 |
C3 |
H31 |
178.3 |
60.1 |
C1 |
C2 |
C3 |
H32 |
287.8 |
180.0 |
H21 |
C2 |
C1 |
H22 |
250.5 |
240.0 |
C6 |
C1 |
N |
HN |
52.1 |
90.1 |
N |
C1 |
C6 |
C2 |
220.9 |
239.9 |
N |
C1 |
C6 |
H1 |
109.3 |
120.0 |
C2 |
C1 |
C6 |
H1 |
248.3 |
240.1 |
C6 |
C1 |
C2 |
C3 |
307.2 |
59.9 |
C6 |
C1 |
C2 |
H21 |
72.5 |
180.0 |
C6 |
C1 |
C2 |
H22 |
182.0 |
299.9 |
C4 |
C5 |
C6 |
C1 |
301.9 |
60.0 |
C1 |
C6 |
C5 |
H51 |
176.6 |
299.9 |
C1 |
C6 |
C5 |
H52 |
67.2 |
180.0 |
C5 |
C6 |
C1 |
H61 |
234.8 |
240.0 |
C5 |
C6 |
C1 |
H62 |
125.3 |
120.1 |
H61 |
C6 |
C1 |
H62 |
250.5 |
240.1 |
H1 |
C1 |
N |
HN |
165.0 |
210.1 |
N |
C1 |
H1 |
C2 |
121.3 |
119.9 |
N |
C1 |
H1 |
C6 |
240.2 |
239.9 |
C2 |
C1 |
H1 |
C6 |
118.9 |
120.0 |
H1 |
C1 |
C2 |
C3 |
193.5 |
299.9 |
H1 |
C1 |
C2 |
H21 |
318.8 |
60.0 |
H1 |
C1 |
C2 |
H22 |
68.3 |
180.0 |
H1 |
C1 |
C6 |
C5 |
166.9 |
60.0 |
H1 |
C1 |
C6 |
H61 |
292.1 |
180.0 |
H1 |
C1 |
C6 |
H62 |
41.7 |
299.9 |
C3 |
C2 |
C1 |
C6 |
307.2 |
59.9 |
C3 |
C2 |
C1 |
H1 |
193.5 |
299.9 |
C1 |
C2 |
C3 |
H21 |
125.2 |
120.1 |
C1 |
C2 |
C3 |
H22 |
234.8 |
240.1 |
H21 |
C2 |
C3 |
H22 |
109.5 |
120.0 |
C4 |
C3 |
C2 |
H31 |
234.8 |
240.0 |
C4 |
C3 |
C2 |
H32 |
125.2 |
120.1 |
C2 |
C3 |
C4 |
C5 |
303.4 |
60.0 |
C2 |
C3 |
C4 |
H41 |
68.6 |
180.0 |
C2 |
C3 |
C4 |
H42 |
178.1 |
300.0 |
H31 |
C3 |
C2 |
H32 |
250.4 |
240.1 |
H21 |
C2 |
C1 |
C6 |
72.5 |
180.0 |
H21 |
C2 |
C1 |
H1 |
318.8 |
60.0 |
C1 |
C2 |
H21 |
C3 |
235.3 |
239.9 |
C1 |
C2 |
H21 |
H22 |
117.6 |
120.0 |
C3 |
C2 |
H21 |
H22 |
242.3 |
240.0 |
H21 |
C2 |
C3 |
C4 |
287.8 |
180.0 |
H21 |
C2 |
C3 |
H31 |
53.0 |
300.0 |
H21 |
C2 |
C3 |
H32 |
162.6 |
59.9 |
H22 |
C2 |
C1 |
C6 |
182.0 |
299.9 |
H22 |
C2 |
C1 |
H1 |
68.3 |
180.0 |
C1 |
C2 |
H22 |
C3 |
124.7 |
120.0 |
C1 |
C2 |
H22 |
H21 |
242.4 |
240.0 |
C3 |
C2 |
H22 |
H21 |
117.6 |
120.0 |
H22 |
C2 |
C3 |
C4 |
178.2 |
60.0 |
H22 |
C2 |
C3 |
H31 |
303.5 |
180.0 |
H22 |
C2 |
C3 |
H32 |
53.0 |
300.0 |
C4 |
C3 |
C2 |
H21 |
287.8 |
180.0 |
C4 |
C3 |
C2 |
H22 |
178.2 |
60.0 |
C2 |
C3 |
C4 |
H31 |
125.3 |
120.0 |
C2 |
C3 |
C4 |
H32 |
234.8 |
239.9 |
H31 |
C3 |
C4 |
H32 |
109.5 |
119.9 |
C5 |
C4 |
C3 |
H41 |
234.8 |
240.0 |
C5 |
C4 |
C3 |
H42 |
125.2 |
120.0 |
C3 |
C4 |
C5 |
C6 |
59.0 |
300.0 |
C3 |
C4 |
C5 |
H51 |
184.3 |
60.0 |
C3 |
C4 |
C5 |
H52 |
293.7 |
180.0 |
H41 |
C4 |
C3 |
H42 |
250.5 |
240.0 |
H31 |
C3 |
C2 |
H21 |
53.0 |
300.0 |
H31 |
C3 |
C2 |
H22 |
303.5 |
180.0 |
C2 |
C3 |
H31 |
C4 |
234.5 |
239.9 |
C2 |
C3 |
H31 |
H32 |
117.3 |
120.0 |
C4 |
C3 |
H31 |
H32 |
242.8 |
240.1 |
H31 |
C3 |
C4 |
C5 |
178.1 |
299.9 |
H31 |
C3 |
C4 |
H41 |
303.3 |
60.0 |
H31 |
C3 |
C4 |
H42 |
52.9 |
180.0 |
H32 |
C3 |
C2 |
H21 |
162.6 |
59.9 |
H32 |
C3 |
C2 |
H22 |
53.0 |
300.0 |
C2 |
C3 |
H32 |
C4 |
125.4 |
120.1 |
C2 |
C3 |
H32 |
H31 |
242.7 |
240.0 |
C4 |
C3 |
H32 |
H31 |
117.2 |
119.9 |
H32 |
C3 |
C4 |
C5 |
68.6 |
180.1 |
H32 |
C3 |
C4 |
H41 |
193.8 |
300.1 |
H32 |
C3 |
C4 |
H42 |
303.4 |
60.1 |
C1 |
C6 |
C5 |
C4 |
301.9 |
60.0 |
C5 |
C4 |
C3 |
H31 |
178.1 |
299.9 |
C5 |
C4 |
C3 |
H32 |
68.6 |
180.1 |
C3 |
C4 |
C5 |
H41 |
125.3 |
120.0 |
C3 |
C4 |
C5 |
H42 |
234.7 |
240.0 |
H41 |
C4 |
C5 |
H42 |
109.4 |
120.0 |
C6 |
C5 |
C4 |
H51 |
234.7 |
240.0 |
C6 |
C5 |
C4 |
H52 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
H61 |
176.6 |
300.0 |
C4 |
C5 |
C6 |
H62 |
67.2 |
180.0 |
H51 |
C5 |
C4 |
H52 |
250.6 |
240.0 |
H41 |
C4 |
C3 |
H31 |
303.3 |
60.0 |
H41 |
C4 |
C3 |
H32 |
193.8 |
300.1 |
C3 |
C4 |
H41 |
C5 |
236.0 |
240.0 |
C3 |
C4 |
H41 |
H42 |
118.0 |
120.0 |
C5 |
C4 |
H41 |
H42 |
242.1 |
240.0 |
H41 |
C4 |
C5 |
C6 |
293.7 |
180.0 |
H41 |
C4 |
C5 |
H51 |
59.0 |
300.0 |
H41 |
C4 |
C5 |
H52 |
168.4 |
60.0 |
H42 |
C4 |
C3 |
H31 |
52.9 |
180.0 |
H42 |
C4 |
C3 |
H32 |
303.4 |
60.1 |
C3 |
C4 |
H42 |
C5 |
124.1 |
120.0 |
C3 |
C4 |
H42 |
H41 |
242.0 |
240.0 |
C5 |
C4 |
H42 |
H41 |
117.9 |
120.0 |
H42 |
C4 |
C5 |
C6 |
184.3 |
60.0 |
H42 |
C4 |
C5 |
H51 |
309.6 |
180.0 |
H42 |
C4 |
C5 |
H52 |
59.0 |
300.0 |
C5 |
C6 |
C1 |
H1 |
166.9 |
60.0 |
C1 |
C6 |
C5 |
H61 |
125.3 |
120.0 |
C1 |
C6 |
C5 |
H62 |
234.7 |
239.9 |
C6 |
C5 |
C4 |
H41 |
293.7 |
180.0 |
C6 |
C5 |
C4 |
H42 |
184.3 |
60.0 |
C4 |
C5 |
C6 |
H51 |
125.3 |
120.1 |
C4 |
C5 |
C6 |
H52 |
234.7 |
240.0 |
H51 |
C5 |
C6 |
H52 |
109.4 |
119.9 |
H61 |
C6 |
C5 |
H62 |
109.4 |
120.0 |
H51 |
C5 |
C4 |
H41 |
59.0 |
300.0 |
H51 |
C5 |
C4 |
H42 |
309.6 |
180.0 |
C4 |
C5 |
H51 |
C6 |
235.3 |
239.9 |
C4 |
C5 |
H51 |
H52 |
117.6 |
120.0 |
C6 |
C5 |
H51 |
H52 |
242.4 |
240.1 |
H51 |
C5 |
C6 |
H61 |
51.3 |
180.0 |
H51 |
C5 |
C6 |
H62 |
301.9 |
60.0 |
H52 |
C5 |
C4 |
H41 |
168.4 |
60.0 |
H52 |
C5 |
C4 |
H42 |
59.0 |
300.0 |
C4 |
C5 |
H52 |
C6 |
124.7 |
120.0 |
C4 |
C5 |
H52 |
H51 |
242.4 |
240.0 |
C6 |
C5 |
H52 |
H51 |
117.6 |
119.9 |
H52 |
C5 |
C6 |
H61 |
301.9 |
60.0 |
H52 |
C5 |
C6 |
H62 |
192.5 |
300.1 |
H61 |
C6 |
C1 |
H1 |
292.1 |
180.0 |
C1 |
C6 |
H61 |
C5 |
235.8 |
240.0 |
C1 |
C6 |
H61 |
H62 |
118.0 |
119.9 |
H61 |
C6 |
C5 |
H51 |
51.3 |
180.0 |
H61 |
C6 |
C5 |
H52 |
301.9 |
60.0 |
C5 |
C6 |
H61 |
H62 |
242.2 |
240.0 |
H62 |
C6 |
C1 |
H1 |
41.7 |
299.9 |
C1 |
C6 |
H62 |
C5 |
124.2 |
120.1 |
C1 |
C6 |
H62 |
H61 |
242.1 |
240.1 |
H62 |
C6 |
C5 |
H51 |
301.9 |
60.0 |
H62 |
C6 |
C5 |
H52 |
192.5 |
300.1 |
C5 |
C6 |
H62 |
H61 |
117.8 |
120.0 |