PDB Chemical Component OGX

Ideal Model

Chemical Description

Name 2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine
Formula C12 H19 N6 O7 P S
Formal charge 0
Molecular weight 422.354 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 46
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP2 HO3'
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-(2-sulfanylethyl)phosphonamidic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)NCCS)O3)C(=O)N1
SMILES (CACTVS) NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(=O)NCCS)O3)C(=O)N1
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO[P@](=O)(NCCS)O)O
InChI descriptor InChI=1S/C12H19N6O7PS/c13-11-16-9-8(10(20)17-11)15-12(21)18(9)7-3-5(19)6(25-7)4-24-26(22,23)14-1-2-27/h5-7,19,27H,1-4H2,(H,15,21)(H2,14,22,23)(H3,13,16,17,20)/t5-,6+,7+/m0/s1
InChIKey descriptor QTNBODRGZGXUEH-RRKCRQDMSA-N

Status Information

Last modified 2011-06-04
Created 2009-09-10
Release status REL
Model PDB code 3JR5
Processing site RCSB