PDB Chemical Component OFL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OFL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1' |
C2' |
1.416 |
1.380 |
| C1' |
C6' |
1.413 |
1.384 |
| C1' |
H1' |
1.104 |
1.080 |
| C2' |
C3' |
1.438 |
1.389 |
| C2' |
H2' |
1.103 |
1.079 |
| C3' |
C4' |
1.454 |
1.390 |
| C3' |
N |
1.490 |
1.395 |
| C4' |
C5' |
1.439 |
1.382 |
| C4' |
C7' |
1.582 |
1.505 |
| C5' |
C6' |
1.415 |
1.382 |
| C5' |
H5' |
1.102 |
1.080 |
| C6' |
H6' |
1.103 |
1.080 |
| C7' |
F1 |
1.360 |
1.399 |
| C7' |
F2 |
1.361 |
1.398 |
| C7' |
F3 |
1.365 |
1.398 |
| N |
C5 |
1.500 |
1.389 |
| N |
HN1 |
1.020 |
0.971 |
| C1 |
C2 |
1.410 |
1.386 |
| C1 |
C6 |
1.413 |
1.379 |
| C1 |
H1 |
1.103 |
1.080 |
| C2 |
C3 |
1.412 |
1.377 |
| C2 |
H2 |
1.104 |
1.080 |
| C3 |
C4 |
1.432 |
1.398 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C5 |
1.465 |
1.403 |
| C4 |
C7 |
1.546 |
1.474 |
| C5 |
C6 |
1.435 |
1.390 |
| C6 |
H6 |
1.103 |
1.080 |
| C7 |
O1 |
1.262 |
1.348 |
| C7 |
O2 |
1.257 |
1.214 |
| O1 |
HO1 |
0.950 |
0.967 |
Bond Angles for OFL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
C1' |
C6' |
120.5 |
120.1 |
| C2' |
C1' |
H1' |
119.8 |
120.0 |
| C1' |
C2' |
C3' |
120.5 |
119.9 |
| C1' |
C2' |
H2' |
119.0 |
120.0 |
| C6' |
C1' |
H1' |
119.7 |
119.9 |
| C1' |
C6' |
C5' |
120.6 |
120.1 |
| C1' |
C6' |
H6' |
119.6 |
119.9 |
| C3' |
C2' |
H2' |
120.5 |
120.1 |
| C2' |
C3' |
C4' |
118.8 |
119.9 |
| C2' |
C3' |
N |
121.8 |
120.0 |
| C4' |
C3' |
N |
119.4 |
120.1 |
| C3' |
C4' |
C5' |
119.3 |
119.9 |
| C3' |
C4' |
C7' |
120.5 |
120.0 |
| C3' |
N |
C5 |
127.2 |
120.1 |
| C3' |
N |
HN1 |
106.0 |
120.0 |
| C5' |
C4' |
C7' |
120.2 |
120.1 |
| C4' |
C5' |
C6' |
120.3 |
120.1 |
| C4' |
C5' |
H5' |
120.7 |
119.9 |
| C4' |
C7' |
F1 |
110.2 |
109.5 |
| C4' |
C7' |
F2 |
109.3 |
109.5 |
| C4' |
C7' |
F3 |
109.8 |
109.5 |
| C6' |
C5' |
H5' |
119.0 |
120.0 |
| C5' |
C6' |
H6' |
119.8 |
119.9 |
| F1 |
C7' |
F2 |
108.7 |
109.5 |
| F1 |
C7' |
F3 |
109.4 |
109.5 |
| F2 |
C7' |
F3 |
109.3 |
109.4 |
| C5 |
N |
HN1 |
106.0 |
119.9 |
| N |
C5 |
C4 |
119.3 |
120.2 |
| N |
C5 |
C6 |
122.2 |
120.2 |
| C2 |
C1 |
C6 |
120.7 |
120.4 |
| C2 |
C1 |
H1 |
119.5 |
119.8 |
| C1 |
C2 |
C3 |
120.5 |
120.3 |
| C1 |
C2 |
H2 |
119.6 |
119.8 |
| C6 |
C1 |
H1 |
119.8 |
119.8 |
| C1 |
C6 |
C5 |
120.6 |
120.1 |
| C1 |
C6 |
H6 |
118.9 |
120.0 |
| C3 |
C2 |
H2 |
119.8 |
119.8 |
| C2 |
C3 |
C4 |
120.5 |
119.9 |
| C2 |
C3 |
H3 |
119.0 |
120.0 |
| C4 |
C3 |
H3 |
120.5 |
120.1 |
| C3 |
C4 |
C5 |
119.2 |
119.7 |
| C3 |
C4 |
C7 |
119.5 |
120.2 |
| C5 |
C4 |
C7 |
121.3 |
120.2 |
| C4 |
C5 |
C6 |
118.5 |
119.6 |
| C4 |
C7 |
O1 |
120.4 |
120.0 |
| C4 |
C7 |
O2 |
120.4 |
120.0 |
| C5 |
C6 |
H6 |
120.5 |
119.9 |
| O1 |
C7 |
O2 |
119.1 |
120.0 |
| C7 |
O1 |
HO1 |
120.5 |
120.0 |
Torsion Angles for OFL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6' |
C1' |
C2' |
H1' |
180.0 |
180.1 |
| C2' |
C1' |
C6' |
C5' |
359.9 |
360.0 |
| C2' |
C1' |
C6' |
H6' |
179.8 |
179.9 |
| C3' |
C2' |
C1' |
H2' |
179.9 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
0.2 |
0.2 |
| C1' |
C2' |
C3' |
N |
179.7 |
180.0 |
| C2' |
C1' |
C6' |
H1' |
180.0 |
179.9 |
| C6' |
C1' |
C2' |
C3' |
359.9 |
0.1 |
| C6' |
C1' |
C2' |
H2' |
179.9 |
180.0 |
| C4' |
C5' |
C6' |
C1' |
0.2 |
359.7 |
| C1' |
C6' |
C5' |
H5' |
180.2 |
180.0 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
180.1 |
| C2' |
C1' |
H1' |
C6' |
180.0 |
180.1 |
| H1' |
C1' |
C2' |
C3' |
179.9 |
180.0 |
| H1' |
C1' |
C2' |
H2' |
359.9 |
359.9 |
| H1' |
C1' |
C6' |
C5' |
179.9 |
180.0 |
| H1' |
C1' |
C6' |
H6' |
359.9 |
360.0 |
| C3' |
C2' |
C1' |
C6' |
359.9 |
0.1 |
| C3' |
C2' |
C1' |
H1' |
179.9 |
180.0 |
| C1' |
C2' |
C3' |
H2' |
180.1 |
179.9 |
| C4' |
C3' |
C2' |
N |
180.6 |
180.2 |
| C2' |
C3' |
C4' |
C5' |
359.9 |
359.5 |
| C2' |
C3' |
C4' |
C7' |
179.6 |
180.0 |
| C2' |
C3' |
N |
C5 |
49.9 |
352.7 |
| C2' |
C3' |
N |
HN1 |
284.7 |
172.7 |
| H2' |
C2' |
C1' |
C6' |
179.9 |
180.0 |
| H2' |
C2' |
C1' |
H1' |
359.9 |
359.9 |
| C1' |
C2' |
H2' |
C3' |
179.9 |
180.1 |
| H2' |
C2' |
C3' |
C4' |
180.2 |
180.3 |
| H2' |
C2' |
C3' |
N |
359.6 |
0.1 |
| C4' |
C3' |
C2' |
H2' |
180.2 |
180.3 |
| C2' |
C3' |
C4' |
N |
179.4 |
179.8 |
| C4' |
C3' |
N |
C5 |
229.3 |
172.5 |
| C4' |
C3' |
N |
HN1 |
104.1 |
352.5 |
| C5' |
C4' |
C3' |
C7' |
180.3 |
179.5 |
| C3' |
C4' |
C5' |
C6' |
359.9 |
0.5 |
| C3' |
C4' |
C5' |
H5' |
180.0 |
180.3 |
| C3' |
C4' |
C7' |
F1 |
198.3 |
179.5 |
| C3' |
C4' |
C7' |
F2 |
317.7 |
299.5 |
| C3' |
C4' |
C7' |
F3 |
77.7 |
59.5 |
| N |
C3' |
C2' |
H2' |
359.6 |
0.1 |
| C2' |
C3' |
N |
C4' |
180.6 |
180.2 |
| N |
C3' |
C4' |
C5' |
180.4 |
179.7 |
| N |
C3' |
C4' |
C7' |
0.2 |
0.2 |
| C5 |
N |
C3' |
HN1 |
125.2 |
180.0 |
| C3' |
N |
C5 |
C4 |
183.1 |
137.6 |
| C3' |
N |
C5 |
C6 |
3.0 |
318.2 |
| C1' |
C6' |
C5' |
C4' |
0.2 |
359.7 |
| C5' |
C4' |
C3' |
N |
180.4 |
179.7 |
| C3' |
C4' |
C5' |
C7' |
179.7 |
180.5 |
| C5' |
C4' |
C7' |
F1 |
18.0 |
360.0 |
| C5' |
C4' |
C7' |
F2 |
137.5 |
120.0 |
| C5' |
C4' |
C7' |
F3 |
257.4 |
240.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
180.2 |
| C4' |
C5' |
C6' |
H6' |
180.2 |
179.8 |
| C7' |
C4' |
C3' |
N |
0.2 |
0.2 |
| C3' |
C4' |
C7' |
C5' |
180.3 |
179.5 |
| C7' |
C4' |
C5' |
C6' |
180.2 |
180.0 |
| C7' |
C4' |
C5' |
H5' |
0.2 |
359.8 |
| F1 |
C7' |
C4' |
F2 |
240.6 |
240.0 |
| F1 |
C7' |
C4' |
F3 |
120.6 |
120.0 |
| F2 |
C7' |
C4' |
F3 |
240.0 |
240.0 |
| C5' |
C6' |
C1' |
H1' |
179.9 |
180.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
179.9 |
| C6' |
C5' |
C4' |
C7' |
180.2 |
180.0 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
179.8 |
| H5' |
C5' |
C4' |
C7' |
0.2 |
359.8 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
180.2 |
| H5' |
C5' |
C6' |
H6' |
0.2 |
0.0 |
| H6' |
C6' |
C1' |
H1' |
359.9 |
360.0 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
180.1 |
| H6' |
C6' |
C5' |
H5' |
0.2 |
0.0 |
| C4' |
C7' |
F1 |
F2 |
119.8 |
120.1 |
| C4' |
C7' |
F1 |
F3 |
239.1 |
240.0 |
| F2 |
C7' |
F1 |
F3 |
119.3 |
120.0 |
| C4' |
C7' |
F2 |
F1 |
239.6 |
240.0 |
| C4' |
C7' |
F2 |
F3 |
120.3 |
120.0 |
| F1 |
C7' |
F2 |
F3 |
240.6 |
240.0 |
| C4' |
C7' |
F3 |
F1 |
121.1 |
120.0 |
| C4' |
C7' |
F3 |
F2 |
240.0 |
240.0 |
| F1 |
C7' |
F3 |
F2 |
118.9 |
120.0 |
| C3' |
N |
C5 |
HN1 |
234.8 |
180.0 |
| C1 |
C6 |
C5 |
N |
180.1 |
180.0 |
| C3 |
C4 |
C5 |
N |
179.9 |
180.1 |
| N |
C5 |
C4 |
C7 |
359.8 |
0.3 |
| C4 |
C5 |
N |
C6 |
180.1 |
179.4 |
| N |
C5 |
C6 |
H6 |
0.1 |
359.7 |
| C3' |
N |
HN1 |
C5 |
137.4 |
180.0 |
| HN1 |
N |
C5 |
C4 |
308.4 |
317.6 |
| HN1 |
N |
C5 |
C6 |
128.3 |
138.2 |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
0.0 |
359.7 |
| C2 |
C1 |
C6 |
H6 |
180.1 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
0.0 |
| C1 |
C2 |
C3 |
H3 |
180.1 |
180.0 |
| N |
C5 |
C6 |
C1 |
180.1 |
180.0 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
359.9 |
0.0 |
| C6 |
C1 |
C2 |
H2 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.0 |
0.6 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.7 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.0 |
| H1 |
C1 |
C2 |
C3 |
179.9 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
359.9 |
0.0 |
| H1 |
C1 |
C6 |
C5 |
180.0 |
179.7 |
| H1 |
C1 |
C6 |
H6 |
0.1 |
360.0 |
| C3 |
C2 |
C1 |
C6 |
359.9 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
179.9 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
360.0 |
0.2 |
| C2 |
C3 |
C4 |
C7 |
180.1 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
179.9 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
359.9 |
0.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
0.1 |
359.9 |
| N |
C5 |
C4 |
C3 |
179.9 |
180.1 |
| C4 |
C3 |
C2 |
H2 |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
C7 |
179.9 |
180.3 |
| C3 |
C4 |
C5 |
C6 |
360.0 |
359.5 |
| C3 |
C4 |
C7 |
O1 |
359.9 |
353.9 |
| C3 |
C4 |
C7 |
O2 |
179.9 |
173.8 |
| H3 |
C3 |
C2 |
H2 |
0.1 |
359.9 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.1 |
| H3 |
C3 |
C4 |
C5 |
180.0 |
180.3 |
| H3 |
C3 |
C4 |
C7 |
0.1 |
0.1 |
| C4 |
C5 |
N |
HN1 |
308.4 |
317.6 |
| N |
C5 |
C4 |
C6 |
179.9 |
180.6 |
| C1 |
C6 |
C5 |
C4 |
0.0 |
0.6 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.3 |
| C3 |
C4 |
C5 |
C7 |
180.1 |
179.7 |
| C5 |
C4 |
C7 |
O1 |
180.0 |
173.6 |
| C5 |
C4 |
C7 |
O2 |
0.0 |
353.6 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.3 |
| C7 |
C4 |
C3 |
H3 |
0.1 |
0.1 |
| C3 |
C4 |
C7 |
C5 |
179.9 |
180.3 |
| C7 |
C4 |
C5 |
C6 |
179.9 |
179.7 |
| O1 |
C7 |
C4 |
O2 |
179.9 |
180.1 |
| C4 |
C7 |
O1 |
HO1 |
180.0 |
180.0 |
| C6 |
C5 |
N |
HN1 |
128.3 |
138.2 |
| N |
C5 |
C6 |
C4 |
180.1 |
179.4 |
| C5 |
C6 |
C1 |
H1 |
180.0 |
179.7 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
C7 |
179.9 |
179.7 |
| H6 |
C6 |
C1 |
H1 |
0.1 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| C4 |
C7 |
O1 |
O2 |
180.1 |
179.9 |
| C4 |
C7 |
O2 |
O1 |
179.9 |
180.1 |
| O2 |
C7 |
O1 |
HO1 |
359.9 |
0.1 |
| HO1 |
O1 |
C7 |
O2 |
359.9 |
0.1 |