PDB Chemical Component ODP

Ideal Model

Chemical Description

Name 4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDE PHOSPHATE
Formula C21 H29 N7 O18 P3
Formal charge 1
Molecular weight 760.412 g/mol
Component type RNA LINKING

Chemical features

Atom count 78
Chiral atom count 11
Chiral atoms C2B C3B C1B C4B PA PN C4D C1D C2D C3D C3N
Bond count 82
Aromatic bond count 10

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4-oxo-3H-pyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC(=O)[C@H]1C=[N+](C=CC1=O)[C@@H]2O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC(=O)[CH]1C=[N+](C=CC1=O)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)[N+]5=CC(C(=O)C=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
InChI descriptor InChI=1S/C21H28N7O18P3/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(45-47(34,35)36)14(31)11(44-21)5-42-49(39,40)46-48(37,38)41-4-10-13(30)15(32)20(43-10)27-2-1-9(29)8(3-27)18(23)33/h1-3,6-8,10-11,13-16,20-21,30-32H,4-5H2,(H7-,22,23,24,25,33,34,35,36,37,38,39,40)/p+1/t8-,10+,11+,13+,14+,15+,16+,20+,21+/m0/s1
InChIKey descriptor PIXSDSMVQQICPA-BYJCYCELSA-O

Status Information

Last modified 2011-06-04
Created 2002-05-17
Release status REL
Model PDB code 1LQT
Processing site RCSB