PDB Chemical Component ODN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ODN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C14	C13	1.529	1.520
C13	C12	1.513	1.547
C13	C17	1.509	1.524
O2	C11	1.430	1.431
C12	C11	1.509	1.563
C12	C15	1.527	1.531
C11	C10	1.526	1.552
C15	C16	1.538	1.538
C17	O3	1.226	1.206
C17	C10	1.516	1.507
O4	C18	1.432	1.426
C10	C18	1.538	1.514
C10	C9	1.528	1.538
C16	C9	1.534	1.523
C18	O1	1.438	1.444
C18	C19	1.528	1.533
O1	C8	1.437	1.431
C9	C7	1.553	1.541
O5	C19	1.433	1.429
C8	C7	1.530	1.525
C19	C6	1.529	1.529
C7	C6	1.546	1.529
C7	C	1.533	1.521
C6	C3	1.551	1.512
O	C	1.433	1.433
C	C1	1.527	1.529
C3	C4	1.527	1.528
C3	C5	1.519	1.543
C3	C2	1.518	1.533
C1	C2	1.519	1.524
O4	H1	0.950	0.967
C8	H2	1.100	1.097
C8	H3	1.100	1.085
C19	H4	1.100	1.091
O5	H5	0.950	0.966
C6	H6	1.100	1.117
C5	H7	1.100	1.090
C5	H8	1.100	1.090
C5	H9	1.100	1.090
C4	H10	1.100	1.090
C4	H11	1.100	1.089
C4	H12	1.100	1.090
C2	H13	1.100	1.091
C2	H14	1.100	1.092
C1	H15	1.100	1.088
C1	H16	1.100	1.095
C13	H17	1.100	1.099
C14	H18	1.100	1.090
C14	H19	1.100	1.090
C14	H20	1.100	1.090
C12	H21	1.100	1.090
C11	H22	1.100	1.083
O2	H23	0.950	0.967
C15	H24	1.100	1.086
C15	H25	1.100	1.098
C16	H26	1.100	1.096
C16	H27	1.100	1.084
C9	H28	1.100	1.093
C	H29	1.100	1.091
O	H30	0.950	0.968

Bond Angles for ODN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C13	C12	110.9	113.0
C14	C13	H17	110.1	109.5
C13	C12	C11	102.2	99.5
C13	C12	C15	110.0	110.1
C12	C13	H17	110.3	109.2
C13	C12	H21	112.1	113.2
O2	C11	H22	111.8	110.7
C11	C12	C15	108.1	106.7
C11	C12	H21	112.1	112.6
C12	C11	H22	110.6	111.8
C12	C15	C16	113.7	110.2
C15	C12	H21	111.9	113.6
C12	C15	H24	108.4	112.8
C12	C15	H25	108.4	109.2
C11	C10	C9	110.6	106.1
C15	C16	C9	113.0	108.9
C16	C15	H24	108.4	108.2
C16	C15	H25	108.4	108.3
C15	C16	H26	108.6	108.2
C15	C16	H27	108.6	110.1
C17	C10	C18	118.6	114.9
C17	C10	C9	109.8	109.3
O4	C18	O1	110.2	110.0
O4	C18	C19	108.6	109.8
C18	C10	C9	107.9	110.1
C10	C18	O1	107.0	107.0
C10	C18	C19	113.7	112.9
C10	C9	C16	108.9	109.1
C10	C9	C7	109.9	106.9
C10	C9	H28	107.0	109.4
C16	C9	C7	116.9	112.6
C9	C16	H26	108.6	109.3
C9	C16	H27	108.6	111.5
C16	C9	H28	106.9	110.0
O1	C18	C19	106.4	106.6
C18	O1	C8	114.5	112.3
C18	C19	C6	109.6	109.6
C18	C19	H4	107.9	108.4
O1	C8	C7	109.5	111.0
O1	C8	H2	109.5	108.1
O1	C8	H3	109.5	110.2
C8	C7	C9	108.1	108.9
C9	C7	C	112.9	109.7
C7	C9	H28	106.7	108.8
O5	C19	C6	110.9	109.7
O5	C19	H4	109.0	108.0
C8	C7	C6	110.7	111.5
C8	C7	C	110.0	110.6
C7	C8	H2	109.5	108.9
C7	C8	H3	109.5	111.0
C19	C6	C3	112.4	113.1
C6	C19	H4	107.8	111.1
C19	C6	H6	105.9	105.9
C7	C6	H6	105.8	106.2
C7	C	H29	108.9	109.6
C6	C3	C4	114.6	113.2
C6	C3	C5	107.4	108.7
C6	C3	C2	109.0	110.3
C3	C6	H6	105.7	106.6
O	C	H29	110.3	109.0
C	C1	H15	109.2	109.9
C	C1	H16	109.2	108.8
C5	C3	C4	106.7	107.8
C4	C3	C2	111.0	109.4
C3	C4	H10	109.5	109.4
C3	C4	H11	109.5	109.5
C3	C4	H12	109.5	109.5
C5	C3	C2	107.9	107.2
C3	C5	H7	109.5	109.4
C3	C5	H8	109.5	109.5
C3	C5	H9	109.5	109.5
C3	C2	H13	109.2	109.3
C3	C2	H14	109.3	109.0
C1	C2	H13	109.2	109.8
C1	C2	H14	109.2	109.5
H2	C8	H3	109.4	107.5
H7	C5	H8	109.5	109.5
H7	C5	H9	109.4	109.5
H8	C5	H9	109.5	109.4
H10	C4	H11	109.5	109.4
H10	C4	H12	109.5	109.5
H11	C4	H12	109.5	109.6
H13	C2	H14	109.5	109.1
H15	C1	H16	109.4	108.4
H18	C14	H19	109.5	109.5
H18	C14	H20	109.4	109.5
H19	C14	H20	109.5	109.5
H24	C15	H25	109.5	108.1
H26	C16	H27	109.5	108.8

Torsion Angles for ODN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C14	C13	C12	C11	198.5	196.4
C14	C13	C12	C15	313.2	308.3
C12	C13	C14	H17	237.7	238.1
C14	C13	C12	H21	78.3	76.7
C14	C13	C12	H17	122.2	122.0
C11	C12	C13	C15	245.4	248.2
C11	C12	C13	H21	120.2	119.7
C13	C12	C11	H22	168.8	167.0
C13	C12	C15	C16	255.0	253.0
C15	C12	C13	H21	234.9	231.6
C13	C12	C15	H24	15.6	14.0
C13	C12	C15	H25	134.4	134.2
C13	C17	C10	C9	258.5	258.3
O2	C11	C12	C15	177.5	176.3
O2	C11	C12	H21	53.8	50.9
C12	C11	O2	H22	236.0	235.6
O2	C11	C10	C9	194.5	194.8
C13	C12	C11	C15	116.0	114.5
C11	C12	C13	H17	76.4	74.4
C13	C12	C11	H21	239.8	239.9
O2	C11	C12	H22	124.7	123.7
C11	C12	C15	C16	5.8	0.0
C15	C12	C11	H21	123.7	125.4
C11	C12	C15	H24	126.4	121.0
C11	C12	C15	H25	245.2	241.2
C12	C11	C10	C9	76.3	78.3
C13	C12	C15	C11	249.2	253.0
C15	C12	C13	H17	191.0	186.2
C13	C12	C15	H21	125.3	128.2
C11	C12	C15	H21	236.1	235.2
C15	C12	C11	H22	52.8	52.6
C12	C15	C16	C9	49.1	60.8
C16	C15	C12	H24	239.4	239.0
C16	C15	C12	H25	120.6	118.8
C12	C15	C16	H26	169.6	179.5
C12	C15	C16	H27	288.6	298.3
H24	C15	C12	H25	241.2	239.8
C17	C10	C11	C9	244.8	244.0
C18	C10	C11	C9	119.6	119.3
C11	C10	C9	C16	338.5	341.3
C11	C10	C9	C7	107.7	103.3
C11	C10	C9	H28	223.3	220.9
C16	C15	C12	H21	129.7	124.8
C12	C15	C16	H24	120.6	123.7
C12	C15	C16	H25	239.4	240.6
C10	C9	C16	C15	320.9	310.6
C15	C16	C9	C7	195.7	192.1
C9	C16	C15	H26	239.5	241.3
C9	C16	C15	H27	120.5	122.5
C15	C16	C9	H28	76.2	70.6
H24	C15	C16	H25	118.8	117.0
H26	C16	C15	H27	241.0	241.2
C11	C10	C17	C9	115.8	113.8
C18	C10	C17	C9	235.3	235.6
C17	C10	C18	O1	192.8	193.4
C17	C10	C18	C19	75.6	76.5
C17	C10	C9	C16	86.7	94.8
C17	C10	C9	C7	215.9	216.8
C17	C10	C9	H28	331.4	334.4
O4	C18	C10	C9	187.4	189.2
C10	C18	O4	O1	241.8	242.1
C10	C18	O4	C19	125.6	125.2
O1	C18	O4	C19	243.8	243.1
O4	C18	O1	C8	183.7	186.3
O4	C18	C19	C6	180.5	179.4
O4	C18	C19	H4	297.6	300.9
C11	C10	C18	C9	238.8	243.2
C17	C10	C18	C9	125.6	124.0
O4	C18	C10	O1	120.1	119.7
O4	C18	C10	C19	237.3	236.6
C18	C10	C9	C16	217.3	221.9
C18	C10	C9	C7	346.4	343.9
C18	C10	C9	H28	102.0	101.5
O1	C18	C10	C19	117.2	116.9
C10	C18	O1	C8	304.1	306.4
C10	C18	C19	C6	56.6	55.6
C10	C18	C19	H4	173.8	177.0
C15	C16	C9	C10	320.9	310.6
C17	C10	C9	C18	229.4	232.9
C9	C10	C18	O1	67.3	69.5
C9	C10	C18	C19	310.1	312.6
C16	C9	C10	C7	230.8	238.0
C10	C9	C16	H26	200.4	192.6
C10	C9	C16	H27	81.4	72.3
C16	C9	C10	H28	115.2	120.4
C8	C7	C9	C10	312.1	313.8
C10	C9	C7	C	190.2	192.7
C7	C9	C10	H28	244.4	242.4
C9	C16	C15	H24	288.5	297.1
C9	C16	C15	H25	169.7	180.1
C15	C16	C9	H26	120.5	118.0
C15	C16	C9	H27	239.5	238.3
C10	C9	C16	C7	125.2	118.5
C10	C9	C16	H28	244.7	240.0
C8	C7	C9	C16	76.8	73.6
C16	C9	C7	C	314.9	312.4
C7	C9	C16	H28	119.5	121.5
H26	C16	C9	H27	119.0	120.3
O4	C18	O1	C19	117.6	118.9
O1	C18	C10	C9	67.3	69.5
C10	C18	O1	C19	238.1	239.0
O1	C18	C19	C6	299.1	298.4
O1	C18	C19	H4	56.2	59.9
C18	O1	C8	C7	351.4	349.1
C18	O1	C8	H2	111.4	108.5
C18	O1	C8	H3	231.4	225.7
O4	C18	C19	O1	241.4	241.0
C19	C18	C10	C9	310.1	312.6
C10	C18	C19	O1	117.5	117.1
C19	C18	O1	C8	66.1	67.4
O5	C19	C18	C6	236.9	239.3
O5	C19	C18	H4	119.7	117.8
C18	C19	C6	C3	134.2	132.2
C6	C19	C18	H4	242.8	238.6
C18	C19	C6	H6	249.2	248.6
C8	O1	C18	C19	66.1	67.4
O1	C8	C7	C9	62.2	64.4
O1	C8	C7	C6	308.2	309.9
O1	C8	C7	C	185.9	185.0
C7	C8	O1	H2	240.0	240.6
C7	C8	O1	H3	120.0	123.3
H2	C8	O1	H3	240.0	242.7
C10	C9	C7	C16	235.3	240.2
C10	C9	C7	H28	115.7	118.1
C7	C9	C16	H26	75.2	74.1
C7	C9	C16	H27	316.2	313.8
C16	C9	C7	H28	240.4	237.8
C8	C7	C9	C6	242.0	240.8
C8	C7	C9	C	122.0	121.1
C9	C7	C8	H2	302.2	305.5
C9	C7	C8	H3	182.2	187.3
C9	C7	C6	H6	50.6	48.8
C9	C7	C	H29	313.7	314.0
C18	C19	O5	C6	122.4	120.6
C18	C19	O5	H4	241.0	241.9
O5	C19	C6	C3	257.7	253.0
C6	C19	O5	H4	118.6	121.2
O5	C19	C6	H6	12.7	9.5
C10	C9	C7	C8	312.1	313.8
C16	C9	C7	C8	76.8	73.6
O1	C8	C7	H2	120.0	118.9
O1	C8	C7	H3	240.0	237.1
C9	C7	C8	C	236.3	239.4
C8	C7	C9	H28	196.4	195.7
C8	C7	C6	H6	166.9	166.2
C8	C7	C	H29	192.8	193.9
H2	C8	C7	H3	120.0	118.2
C18	C19	C6	H4	117.2	119.8
O5	C19	C6	H4	240.7	240.7
C8	C7	C6	C19	53.2	52.5
C7	C6	C19	H6	113.6	113.9
C19	C6	C3	C4	308.1	306.4
C19	C6	C3	C5	66.5	66.2
C19	C6	C3	C2	183.1	183.5
C3	C6	C19	H6	245.0	243.6
C10	C9	C7	C6	70.1	73.0
C8	C7	C6	C9	116.2	117.4
C8	C7	C6	C	237.9	235.7
C6	C7	C8	H2	188.2	190.9
C6	C7	C8	H3	68.2	72.8
C7	C6	C19	H4	245.6	242.7
C19	C6	C7	H6	246.3	246.3
C3	C6	C7	H6	117.3	117.8
C8	C7	C	C9	239.1	239.9
C	C7	C9	H28	74.4	74.6
C8	C7	C	C6	122.6	124.8
C	C7	C8	H2	65.8	66.0
C	C7	C8	H3	305.9	307.9
C	C7	C6	H6	289.0	290.5
O	C	C7	H29	121.7	119.6
C7	C	C1	H15	180.3	297.5
C7	C	C1	H16	299.9	179.0
C8	C7	C6	C3	284.2	284.0
C3	C6	C19	H4	17.0	12.4
C19	C6	C3	H6	115.1	116.0
C7	C6	C3	H6	242.7	242.4
C5	C3	C6	C4	118.3	119.8
C4	C3	C6	C2	125.0	122.9
C6	C3	C4	H10	180.0	53.6
C6	C3	C4	H11	300.0	173.5
C6	C3	C4	H12	60.0	293.6
C5	C3	C6	C2	243.3	242.7
C6	C3	C5	H7	180.0	60.0
C6	C3	C5	H8	300.0	180.0
C6	C3	C5	H9	60.0	300.0
C6	C3	C2	H13	176.3	176.9
C6	C3	C2	H14	296.0	296.0
C7	C	O	H29	239.1	240.0
O	C	C1	H15	301.4	57.9
O	C	C1	H16	61.1	299.4
C8	C7	C	C1	72.7	73.0
C	C1	C2	H13	176.2	177.8
C	C1	C2	H14	56.5	58.0
H15	C1	C	H16	240.4	118.6
C6	C3	C4	C5	118.7	120.3
C6	C3	C4	C2	236.0	236.6
C4	C3	C6	H6	193.0	190.4
C5	C3	C4	C2	117.4	116.3
C4	C3	C5	H7	303.3	183.0
C4	C3	C5	H8	63.3	303.0
C4	C3	C5	H9	183.3	63.0
C4	C3	C2	H13	49.2	51.8
C4	C3	C2	H14	168.9	170.9
H10	C4	C3	H11	240.0	240.1
H10	C4	C3	H12	120.0	120.0
H11	C4	C3	H12	240.0	239.9
C6	C3	C5	C4	236.7	237.0
C6	C3	C5	C2	117.4	119.3
C5	C3	C6	H6	311.3	310.2
C4	C3	C5	C2	240.7	242.3
C5	C3	C4	H10	61.3	293.3
C5	C3	C4	H11	181.3	53.2
C5	C3	C4	H12	301.3	173.3
C5	C3	C2	H13	292.6	295.1
C5	C3	C2	H14	52.3	54.3
H7	C5	C3	H8	240.0	240.0
H7	C5	C3	H9	120.0	120.0
H8	C5	C3	H9	240.0	240.0
C6	C3	C2	C4	127.1	125.1
C6	C3	C2	C5	243.7	241.7
C2	C3	C6	H6	68.0	67.5
C5	C3	C2	C4	243.4	243.3
C2	C3	C4	H10	303.9	177.0
C2	C3	C4	H11	64.0	296.9
C2	C3	C4	H12	183.9	57.0
C2	C3	C5	H7	62.6	300.7
C2	C3	C5	H8	182.6	60.7
C2	C3	C5	H9	302.6	180.7
C1	C2	C3	H13	239.8	239.3
C1	C2	C3	H14	120.1	120.2
H13	C2	C3	H14	240.3	240.9
C3	C2	C1	H13	120.2	120.4
C3	C2	C1	H14	239.8	240.2
H13	C2	C1	H14	119.7	119.8
H1	O4	C18	O1	298.2	297.9
H1	O4	C18	C19	54.4	54.8
O1	C8	H2	C7	240.0	239.3
O1	C8	H2	H3	120.0	119.0
H2	C8	C7	C9	302.2	305.5
H2	C8	C7	C6	188.2	190.9
H2	C8	C7	C	65.8	66.0
C7	C8	H2	H3	240.0	239.7
O1	C8	H3	C7	120.0	123.4
O1	C8	H3	H2	240.0	242.4
H3	C8	C7	C9	182.2	187.3
H3	C8	C7	C6	68.2	72.8
H3	C8	C7	C	305.9	307.9
C7	C8	H3	H2	120.0	119.0
C18	C19	H4	C6	241.7	239.5
O5	C19	H4	C6	120.5	120.4
H4	C19	C6	C3	17.0	12.4
H4	C19	C6	H6	132.0	128.8
H5	O5	C19	C6	270.0	179.4
H5	O5	C19	H4	151.5	58.1
C19	C6	H6	C3	240.5	239.3
H6	C6	C19	H4	132.0	128.8
H6	C6	C3	C4	193.0	190.4
H6	C6	C3	C5	311.3	310.2
H6	C6	C3	C2	68.0	67.5
H7	C5	C3	C4	303.3	183.0
H7	C5	C3	C2	62.6	300.7
C3	C5	H7	H8	120.0	120.0
C3	C5	H7	H9	240.0	240.0
H8	C5	H7	H9	120.0	119.9
H8	C5	C3	C4	63.3	303.0
H8	C5	C3	C2	182.6	60.7
C3	C5	H8	H7	240.0	240.0
C3	C5	H8	H9	120.0	120.1
H7	C5	H8	H9	240.0	240.0
H9	C5	C3	C4	183.3	63.0
H9	C5	C3	C2	302.6	180.7
C3	C5	H9	H7	120.0	120.0
C3	C5	H9	H8	240.0	239.9
H7	C5	H9	H8	120.0	120.0
H10	C4	C3	C2	303.9	177.0
C3	C4	H10	H11	120.0	119.9
C3	C4	H10	H12	240.0	240.0
H11	C4	H10	H12	120.0	120.1
H11	C4	C3	C2	64.0	296.9
C3	C4	H11	H10	240.0	240.1
C3	C4	H11	H12	120.0	120.1
H10	C4	H11	H12	240.0	240.0
H12	C4	C3	C2	183.9	57.0
C3	C4	H12	H10	120.0	120.0
C3	C4	H12	H11	240.0	240.0
H10	C4	H12	H11	120.0	120.0
C3	C2	H13	H14	119.6	119.0
C1	C2	H13	H14	240.5	240.0
C3	C2	H14	H13	240.4	240.8
C1	C2	H14	H13	119.5	120.2
C	C1	H15	H16	119.4	241.2
H15	C1	C2	H13	56.0	299.3
H15	C1	C2	H14	296.3	179.6
C	C1	H16	H15	240.5	119.5
H16	C1	C2	H13	296.4	58.6
H16	C1	C2	H14	176.7	298.9
C14	C13	H17	C12	237.4	235.9
H17	C13	C12	C11	76.4	74.4
H17	C13	C12	C15	191.0	186.2
H17	C13	C12	H21	316.1	314.7
H18	C14	C13	C12	180.0	60.0
H18	C14	C13	H17	302.3	181.9
H19	C14	H18	H20	120.0	120.1
H19	C14	C13	C12	300.0	180.0
H19	C14	C13	H17	62.3	301.9
H18	C14	H19	H20	240.0	239.9
H20	C14	C13	C12	60.0	300.0
H20	C14	C13	H17	182.3	61.9
H18	C14	H20	H19	120.0	120.0
C13	C12	H21	C11	114.3	111.9
C13	C12	H21	C15	235.9	233.4
H21	C12	C13	H17	316.1	314.7
C11	C12	H21	C15	121.6	121.5
H21	C12	C11	H22	289.1	287.2
H21	C12	C15	C16	129.7	124.8
H21	C12	C15	H24	250.3	245.8
H21	C12	C15	H25	9.1	6.0
H22	C11	C12	C15	52.8	52.6
H22	C11	C12	H21	289.1	287.2
H22	C11	C10	C9	318.6	319.6
H23	O2	C11	H22	304.0	62.9
C12	C15	H24	C16	236.2	237.9
H24	C15	C12	H21	250.3	245.8
C12	C15	H24	H25	118.1	120.8
H24	C15	C16	C9	288.5	297.1
C16	C15	H24	H25	241.9	242.9
H24	C15	C16	H26	49.0	55.8
H24	C15	C16	H27	168.0	174.6
C12	C15	H25	C16	123.8	120.0
H25	C15	C12	H21	9.1	6.0
C12	C15	H25	H24	241.9	237.0
H25	C15	C16	C9	169.7	180.1
C16	C15	H25	H24	118.1	117.0
H25	C15	C16	H26	290.2	298.8
H25	C15	C16	H27	49.2	57.6
C15	C16	H26	C9	236.8	241.5
H26	C16	C15	H24	49.0	55.8
H26	C16	C15	H25	290.2	298.8
C15	C16	H26	H27	118.4	119.6
H26	C16	C9	C7	75.2	74.1
C9	C16	H26	H27	241.6	238.1
H26	C16	C9	H28	315.7	312.6
C15	C16	H27	C9	123.2	121.0
H27	C16	C15	H24	168.0	174.6
H27	C16	C15	H25	49.2	57.6
C15	C16	H27	H26	241.6	241.6
H27	C16	C9	C7	316.2	313.8
C9	C16	H27	H26	118.4	120.6
H27	C16	C9	H28	196.7	192.3
C10	C9	H28	C16	116.5	119.8
C10	C9	H28	C7	242.3	243.5
C16	C9	H28	C7	125.8	123.7
H28	C9	C16	H26	315.7	312.6
H28	C9	C16	H27	196.7	192.3
H28	C9	C7	C	74.4	74.6
H29	C	C1	H15	60.2	176.5
H29	C	C1	H16	179.8	58.0
H30	O	C	H29	300.9	300.0